diff --git a/paper/paper.Rmd b/paper/paper.Rmd index f90d2fd..966c5e6 100644 --- a/paper/paper.Rmd +++ b/paper/paper.Rmd @@ -670,27 +670,26 @@ different modalities such as genome-wide epigenetic data. Computational details {#computational-details .unnumbered .unnumbered} =============================================================================== +Complete examples of code needed to produce the figures in this paper are +available in the Rmarkdown version in the package GitHub repository + (\url{https://github.com/TomKellyGenetics/graphsim}). + Further details are available in the vignettes as well. + The results in this paper were obtained using R 4.0.2 with the \texttt{igraph} 1.2.5 \texttt{Matrix} 1.2-17, \texttt{matrixcalc} 1.0-3, and \texttt{mvtnorm} 1.1-1 packages. R itself and all dependent packages used are available from the Comprehensive Archive Network (CRAN) at \url{https://CRAN.R-project.org}. The \texttt{graphsim} 1.0.0 package -presented can be installed from CRAN and the issues can be reported to -the development version on GitHub (\url{https://github.com/TomKellyGenetics/graphsim}). +can be installed from CRAN and the issues can be reported to +the development version on GitHub. This package is included in the \texttt{igraph.extensions} library on GitHub (\url{https://github.com/TomKellyGenetics/igraph.extensions}) which installs various tools for \texttt{igraph} analysis. This software is cross-platform and compatible with installations on Windows, Mac, and Linux operating -systems. The package GitHub repository also contains vignettes with more -information and examples on running functions released in the package. +systems. Updates to the package (\texttt{graphsim} 1.0.0) will be released on CRAN. -Complete examples of code needed to produce the figures in this paper are -available in the Rmarkdown version in the package GitHub repository - (\url{https://github.com/TomKellyGenetics/graphsim/paper}). - Further details are available in the vignettes as well. - Acknowledgements {#acknowledgements .unnumbered .unnumbered} =============================================================================== diff --git a/paper/paper.md b/paper/paper.md index 5a5d0ab..6288ff1 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -488,26 +488,25 @@ different modalities such as genome-wide epigenetic data. Computational details {#computational-details .unnumbered .unnumbered} =============================================================================== +Complete examples of code needed to produce the figures in this paper are +available in the Rmarkdown version in the package GitHub repository + (\url{https://github.com/TomKellyGenetics/graphsim}). + Further details are available in the vignettes as well. + The results in this paper were obtained using R 4.0.2 with the \texttt{igraph} 1.2.5 \texttt{Matrix} 1.2-17, \texttt{matrixcalc} 1.0-3, and \texttt{mvtnorm} 1.1-1 packages. R itself and all dependent packages used are available from the Comprehensive Archive Network (CRAN) at \url{https://CRAN.R-project.org}. The \texttt{graphsim} 1.0.0 package -presented can be installed from CRAN and the issues can be reported to -the development version on GitHub (\url{https://github.com/TomKellyGenetics/graphsim}). +can be installed from CRAN and the issues can be reported to +the development version on GitHub. This package is included in the \texttt{igraph.extensions} library on GitHub (\url{https://github.com/TomKellyGenetics/igraph.extensions}) which installs various tools for \texttt{igraph} analysis. This software is cross-platform and compatible with installations on Windows, Mac, and Linux operating -systems. The package GitHub repository also contains vignettes with more -information and examples on running functions released in the package. +systems. Updates to the package (\texttt{graphsim} 1.0.0) will be released on CRAN. - -Complete examples of code needed to produce the figures in this paper are -available in the Rmarkdown version in the package GitHub repository - (\url{https://github.com/TomKellyGenetics/graphsim/paper}). - Further details are available in the vignettes as well. Acknowledgements {#acknowledgements .unnumbered .unnumbered} =============================================================================== diff --git a/paper/paper.pdf b/paper/paper.pdf index 0f81df3..e5820ae 100644 Binary files a/paper/paper.pdf and b/paper/paper.pdf differ