diff --git a/docs/source/02_installation.md b/docs/source/02_installation.md index 712c7287..a600d472 100644 --- a/docs/source/02_installation.md +++ b/docs/source/02_installation.md @@ -112,12 +112,12 @@ export NEOFOX_REFERENCE_FOLDER=path/to/reference/folder ## Test installation The user can test if all the installations have been successful by testing NeoFox with some test data. The test data can be downloaded here: -:download:`test file with neoantigen candidates ` -:download:`test file with patient data ` +:download:`test_data.txt ` +:download:`test_patients.txt ` ````commandline neofox --model-file /path/to/test_data.txt --patient-data /path/to/test_patients.txt --output-folder /path/to/outputfolder --with-short-wide-table --with-tall-skinny-table --with-json --output-prefix test ```` The resulting output files can be compared to the following test output file: -:download:`annotated test file ` +:download:`test_neoantigen_candidates_annotated.tsv `