Release v0.4.0

Major changes

• Create documentation site
• Add help tab
• Spin off a new tab with variant calling metrics
• Add apply button to enable changing multiple parameters without reloading each time
• Remove RNA-seq samples
• Integrate the dN/dS plot over genes and domains
• Remove joint view of ENA + GISAID due to overlapping samples. Now either ENA or GISAID needs to be selected

Minor changes

• Add templates for bugs and feature requests
• Fix some labels and order some legends
• Amended issue with pagination over ENA API due to current limitation in the API
• Migrate CI environment to GitHub
• All tests now run on postgres, no more sqlite for testing
• Improve colors in plots
• Add some indices to the DB to improve performance
• Cache some calls to improve performance

Bugfixes

• Domain coordinates are corrected in the data and the visualizations
• Fix frequency in top recurrent variants table

Release v0.3.3

• Ensure that all external links open in a new tab

Release v0.3.2

• Bugfix release on the data precomputation

Release v0.3.0

Changes

• Added a new to explore intrahost variants
• Added a new tab to download the raw variant calls
• Fix performance issue (#1) in the samples tab by replacing a violin plot by a bar plot
• Add tron and intel message on footer

Release v0.2.1

First production release