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Multi-segment CDS entries not handled by Insert module #27

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kbseah opened this issue Aug 24, 2021 · 1 comment
Closed
3 of 6 tasks

Multi-segment CDS entries not handled by Insert module #27

kbseah opened this issue Aug 24, 2021 · 1 comment
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@kbseah
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kbseah commented Aug 24, 2021

Describe the bug
Insert module does not handle multi-line GFF3 entries, e.g. a CDS that is split across several lines (separated by introns), but where each line shares the same ID attribute. The Gff class in SharedFunctions has to be updated to handle multi-line Gff entries. This was not considered initially because IES entries are always single-line.

Please attach/copy the following:

NA

  • The command that resulted in the error
  • The log file from the BleTIES run (default name: bleties.log)
  • Any error messages that appeared on the console

Version info (please complete the following information):

  • OS: Linux
  • BleTIES version 0.1.10-alpha
  • How you installed BleTIES: Conda
@kbseah kbseah self-assigned this Aug 24, 2021
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kbseah commented Aug 26, 2021

Fixed in commit b13cc09, version v0.1.11

@kbseah kbseah closed this as completed Aug 26, 2021
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