ST Pipeline release

• Make the PIP installation more robust

ST Pipeline release

• Optimized the counting of UMIs by strand, start-pos and offset

ST Pipeline release

Fixed an important bug in one of the parameters
Spliced alignments now disabled by default

ST Pipeline release

• Optimized the mapping and annotation steps

ST Pipeline release

• Added more methods to cluster UMIs
• Optimized the UMI counting algorithm
• Optimized the memory use

ST Pipeline release

• Account for softclipped bases when computing start/end positions

ST Pipeline release

• Changed the limit range of some parameters
• Fixed a show stopping bug in 1.2.4

ST Pipeline release

• Bumped TaggD version
• Added more stats to the dataset output
• Added scripts to compute stats
• Added new option for TaggD

ST Pipeline release

• Fixed bugs in convertEnsemblToNames
• Added some parameteter for TaggD demultiplexing
• Bumped version of TaggD

ST Pipeline release

• Make sure to remove tmp files even if the execution fails