Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

data_add_label_confidence_col_to_labelsTSV_template #96

Closed
meghanaturner opened this issue Dec 12, 2023 · 1 comment · Fixed by #103
Closed

data_add_label_confidence_col_to_labelsTSV_template #96

meghanaturner opened this issue Dec 12, 2023 · 1 comment · Fixed by #103
Assignees

Comments

@meghanaturner
Copy link
Contributor

Related to issue #86 domain_specific_metric_calculations

One application of domain-specific metric calculations is to only compare metrics for those domains for which we are confident that the anatomical/manual labels and transcriptomic signatures align. To do that, we need to specify the confidence of each cell's label and it's suitability for use in domain-specific metrics.

We need to add an optional, numerical column, label_confidence, to labels.tsv. For now, it should only be used as a boolean, 0 for "too low confidence, don't use this label for metrics" and 1 for "high enough confidence to use this label for metrics". In the future, if we want to expand to numeric rankings between 0 and 1, we will need to define explicit criteria for each numeric ranking.

TODO:
Add the optional numeric label_confidence column to labels.tsv templates/documentation.

@meghanaturner
Copy link
Contributor Author

this column will be boolean instead of numerical

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant