Are the paths to the scripts inside config.yaml meant to be added to $PATH?

[init-js]

I'm looking at the profile repositories for examples.

How does snakemake resolve the script paths: e.g. cluster: "grid-submit.py" (from {profiledir}/config.yaml)?

If I am to copy the profile directory in the same folder as a Snakefile, and use --profile {profiledir}, snakemake complains that grid-submit.py cannot be found. Are we expected to modify the config.yaml inside the profile to make script paths relative to the Snakefile?

Or is~/.config/snakemake treated specially?

[johanneskoester]

Usually, the profile should go to .config/snakemake/<profilename>. If you put it there, does it complain about not finding the script file?