#!/usr/bin/env python # -*- coding: utf-8 -*- #=============================================================================== # Copyright (c) 2012 - 2014, GPy authors (see AUTHORS.txt). # Copyright (c) 2014, James Hensman, Max Zwiessele # Copyright (c) 2015, Max Zwiessele # # All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # # * Redistributions of source code must retain the above copyright notice, this # list of conditions and the following disclaimer. # # * Redistributions in binary form must reproduce the above copyright notice, # this list of conditions and the following disclaimer in the documentation # and/or other materials provided with the distribution. # # * Neither the name of GPy nor the names of its # contributors may be used to endorse or promote products derived from # this software without specific prior written permission. # # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE # DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE # FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL # DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR # SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER # CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, # OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE # OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. #=============================================================================== from __future__ import print_function import os import sys from setuptools import setup, Extension import codecs try: ModuleNotFoundError except NameError: ModuleNotFoundError = ImportError def read(fname): with codecs.open(fname, 'r', 'latin') as f: return f.read() def read_to_rst(fname): try: import pypandoc rstname = "{}.{}".format(os.path.splitext(fname)[0], 'rst') pypandoc.convert(read(fname), 'rst', format='md', outputfile=rstname) with open(rstname, 'r') as f: rststr = f.read() return rststr #return read(rstname) except ImportError: return read(fname) desc = """ Please refer to the github homepage for detailed instructions on installation and usage. """ version_dummy = {} exec(read('GPy/__version__.py'), version_dummy) __version__ = version_dummy['__version__'] del version_dummy #Mac OS X Clang doesn't support OpenMP at the current time. #This detects if we are building on a Mac def ismac(): return sys.platform[:6] == 'darwin' if ismac(): compile_flags = [ '-O3', ] link_args = [] else: compile_flags = [ '-fopenmp', '-O3'] link_args = ['-lgomp' ] try: # So that we don't need numpy installed to determine it's a dependency. import numpy as np ext_mods = [Extension(name='GPy.kern.src.stationary_cython', sources=['GPy/kern/src/stationary_cython.pyx', 'GPy/kern/src/stationary_utils.c'], include_dirs=[np.get_include(), '.'], extra_compile_args=compile_flags, extra_link_args=link_args), Extension(name='GPy.util.choleskies_cython', sources=['GPy/util/choleskies_cython.pyx'], include_dirs=[np.get_include(), '.'], extra_link_args=link_args, extra_compile_args=compile_flags), Extension(name='GPy.util.linalg_cython', sources=['GPy/util/linalg_cython.pyx'], include_dirs=[np.get_include(), '.'], extra_compile_args=compile_flags, extra_link_args=link_args), Extension(name='GPy.kern.src.coregionalize_cython', sources=['GPy/kern/src/coregionalize_cython.pyx'], include_dirs=[np.get_include(), '.'], extra_compile_args=compile_flags, extra_link_args=link_args), Extension(name='GPy.models.state_space_cython', sources=['GPy/models/state_space_cython.pyx'], include_dirs=[np.get_include(), '.'], extra_compile_args=compile_flags, extra_link_args=link_args)] except ModuleNotFoundError: ext_mods = [] install_requirements = ['numpy>=1.7', 'six', 'paramz>=0.9.0', 'cython>=0.29'] matplotlib_version = 'matplotlib==3.3.4' if sys.version_info < (3, 6): install_requirements += ['scipy>=1.3.0,<1.5.0'] matplotlib_version = 'matplotlib==3.0.0' else: install_requirements += ['scipy>=1.3.0'] setup(name = 'GPy', version = __version__, author = read_to_rst('AUTHORS.txt'), author_email = "gpy.authors@gmail.com", description = ("The Gaussian Process Toolbox"), long_description = desc, license = "BSD 3-clause", keywords = "machine-learning gaussian-processes kernels", url = "http://sheffieldml.github.com/GPy/", download_url='https://github.com/SheffieldML/GPy/', ext_modules = ext_mods, packages = ["GPy", "GPy.core", "GPy.core.parameterization", "GPy.kern", "GPy.kern.src", "GPy.kern.src.psi_comp", "GPy.models", "GPy.inference", "GPy.inference.optimization", "GPy.inference.mcmc", "GPy.inference.latent_function_inference", "GPy.likelihoods", "GPy.mappings", "GPy.examples", "GPy.testing", "GPy.util", "GPy.plotting", "GPy.plotting.gpy_plot", "GPy.plotting.matplot_dep", "GPy.plotting.matplot_dep.controllers", "GPy.plotting.plotly_dep", ], package_dir={'GPy': 'GPy'}, #package_data = {'GPy': ['defaults.cfg', 'installation.cfg', # 'util/data_resources.json', # 'util/football_teams.json', # 'testing/plotting_tests/baseline/*.png' # ]}, #data_files=[('GPy/testing/plotting_tests/baseline', 'testing/plotting_tests/baseline/*.png'), # ('GPy/testing/', 'GPy/testing/pickle_test.pickle'), # ], include_package_data = True, py_modules = ['GPy.__init__'], test_suite = 'GPy.testing', setup_requires = ['numpy>=1.7'], install_requires = install_requirements, extras_require = {'docs':['sphinx'], 'optional':['mpi4py', 'ipython>=4.0.0', ], #matplotlib Version see github issue #955 'plotting':[matplotlib_version, 'plotly >= 1.8.6'], 'notebook':['jupyter_client >= 4.0.6', 'ipywidgets >= 4.0.3', 'ipykernel >= 4.1.0', 'notebook >= 4.0.5', ], }, classifiers=['License :: OSI Approved :: BSD License', 'Natural Language :: English', 'Operating System :: MacOS :: MacOS X', 'Operating System :: Microsoft :: Windows', 'Operating System :: POSIX :: Linux', 'Programming Language :: Python :: 3.5', 'Programming Language :: Python :: 3.6', 'Programming Language :: Python :: 3.7', 'Programming Language :: Python :: 3.8', 'Programming Language :: Python :: 3.9', 'Framework :: IPython', 'Intended Audience :: Science/Research', 'Intended Audience :: Developers', 'Topic :: Software Development', 'Topic :: Software Development :: Libraries :: Python Modules', ] ) # Check config files and settings: local_file = os.path.abspath(os.path.join(os.path.dirname(__file__), 'GPy', 'installation.cfg')) home = os.getenv('HOME') or os.getenv('USERPROFILE') user_file = os.path.join(home,'.config', 'GPy', 'user.cfg') print("") try: if not os.path.exists(user_file): # Does an old config exist? old_user_file = os.path.join(home,'.gpy_user.cfg') if os.path.exists(old_user_file): # Move it to new location: print("GPy: Found old config file, moving to new location {}".format(user_file)) if not os.path.exists(os.path.dirname(user_file)): os.makedirs(os.path.dirname(user_file)) os.rename(old_user_file, user_file) else: # No config file exists, save informative stub to user config folder: print("GPy: Saving user configuration file to {}".format(user_file)) if not os.path.exists(os.path.dirname(user_file)): os.makedirs(os.path.dirname(user_file)) with open(user_file, 'w') as f: with open(local_file, 'r') as l: tmp = l.read() f.write(tmp) else: print("GPy: User configuration file at location {}".format(user_file)) except: print("GPy: Could not write user configuration file {}".format(user_file))