From 4f756994721657920f092067bed7f8c670a5a7ee Mon Sep 17 00:00:00 2001 From: luciannahss Date: Wed, 21 Aug 2024 11:25:57 -0300 Subject: [PATCH] Links and Background --- docs/source/AMBER/installation.rst | 2 +- docs/source/Background SIRAH.rst | 2 +- docs/source/GROMACS/installation-G.rst | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/docs/source/AMBER/installation.rst b/docs/source/AMBER/installation.rst index d531d46..23fb89f 100644 --- a/docs/source/AMBER/installation.rst +++ b/docs/source/AMBER/installation.rst @@ -44,7 +44,7 @@ _______________________________ Please report bugs, errors or enhancement requests through `Issue Tracker `_ or if you have a question about SIRAH open a `New Discussion `_. -Download `SIRAH for Amber `_ and uncompress it into your working directory. +Download `SIRAH for Amber `_ and uncompress it into your working directory. .. code-block:: bash diff --git a/docs/source/Background SIRAH.rst b/docs/source/Background SIRAH.rst index ec45eec..ed216fe 100644 --- a/docs/source/Background SIRAH.rst +++ b/docs/source/Background SIRAH.rst @@ -41,7 +41,7 @@ Explicit solvent **Figure 3.** SIRAH force field Solvent CG representation. -In tandem with the DNA model development, a CG aqueous solvent was created, featuring CG water (WatFour or WT4) and monovalent electrolytic ions (sodium, potassium, chloride) (**Figure 3**) (see [:ref:`6 `]). The WT4 model resembles a bulkier "water molecule". The monovalent ions are represented by single beads with a net charge of +/- 1e. Supra-CG solvent (WatElse or WLS) is also available (see [:ref:`7 `]) +In tandem with the DNA model development, a CG aqueous solvent was created, featuring CG water (WatFour or WT4) and monovalent electrolytic ions (sodium, potassium, chloride) (**Figure 3**) (see [:ref:`6 `]). The WT4 model resembles a bulkier "water molecule". The monovalent ions are represented by single beads with a net charge of +/- 1e. Supra-CG solvent (WatElse or WLS) is also available (see [:ref:`7 `]). Protein model diff --git a/docs/source/GROMACS/installation-G.rst b/docs/source/GROMACS/installation-G.rst index 5fe9c25..4856397 100644 --- a/docs/source/GROMACS/installation-G.rst +++ b/docs/source/GROMACS/installation-G.rst @@ -41,7 +41,7 @@ ___________________________ Please report bugs, errors or enhancement requests through `Issue Tracker `_ or if you have a question about SIRAH open a `New Discussion `_. -Download `SIRAH for GROMACS `_ and uncompress it into your working directory. +Download `SIRAH for GROMACS `_ and uncompress it into your working directory. .. code-block:: bash