Camera ready code

.github/check_run_scripts.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+
+rm filechk_results.txt
+
+declare -a FilesArray=("requirements.txt" "run_experiment.sh")
+
+for val in ${FilesArray[@]}; 
+do
+    echo "Checking presence of $val"
+    if test -f "$val"; 
+    then
+        echo "$val exists" >> filechk_results.txt
+    else    
+        echo "$val does not exist" >> filechk_results.txt
+    fi
+done

.github/workflows/cloc.yml

@@ -0,0 +1,52 @@
+name: Count Lines of Code
+
+# Controls when the action will run. Triggers the workflow on push or pull request 
+# events but only for the main branch
+on: [pull_request]
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+
+  # This workflow contains a single job called "build"
+  cloc:
+
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - name: Checkout repo
+        uses: actions/checkout@v3
+
+      # Runs djdefi/cloc-action
+      - name: Install and run cloc
+        run: |
+          sudo apt-get install cloc
+          cloc src --csv --quiet --report-file=cloc_report.csv
+
+      - name: Read CSV
+        id: csv
+        uses: juliangruber/read-file-action@v1
+        with:
+          path: ./cloc_report.csv
+
+      - name: Create MD
+        uses: petems/csv-to-md-table-action@master
+        id: csv-table-output
+        with:
+          csvinput: ${{ steps.csv.outputs.content }}
+
+      - name: Write file
+        uses: "DamianReeves/write-file-action@master"
+        with:
+          path: ./cloc_report.md
+          write-mode: overwrite
+          contents: |
+            ${{steps.csv-table-output.outputs.markdown-table}}
+
+      - name: PR comment with file
+        uses: thollander/actions-comment-pull-request@v2
+        with:
+          filePath: ./cloc_report.md

.github/workflows/filechk.yml

@@ -0,0 +1,24 @@
+name: Checks if files are present
+
+on: [pull_request]
+
+jobs:
+
+  # This workflow contains a single job called "test"
+  check_files:
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v3
+
+      - name: Check files script
+        run: |
+          chmod +x ./.github/check_run_scripts.sh
+          ./.github/check_run_scripts.sh
+
+      - name: PR comment with file
+        uses: thollander/actions-comment-pull-request@v2
+        with:
+          filePath: ./filechk_results.txt

.github/workflows/pylinter.yml

@@ -0,0 +1,25 @@
+name: Checks python code for linting
+
+on: [pull_request]
+
+jobs:
+
+  # This workflow contains a single job called "test"
+  check_pylint:
+
+    runs-on: ubuntu-latest
+
+    steps:
+      # - name: Checkout repo
+      #   uses: actions/checkout@v3
+      - uses: actions/checkout@v4
+      - name: Python Linter
+        uses: sunnysid3up/python-linter@master
+        with:
+          source: "src"
+          mypy-options: "--ignore-missing-imports --show-error-codes"
+          #pylint-options: "--rcfile=setup.cfg"
+          isort-options: "-w 100"
+          django: true
+      #- name: GitHub Action for pylint
+      #  uses: marian-code/python-lint-annotate@v3

requirements.txt

@@ -7,4 +7,4 @@ scikit_learn==1.0.1
 scipy==1.12.0
 statsmodels==0.13.2
 torch==2.0.0
-tqdm==4.66.2
+tqdm==4.66.2

run_experiment.sh

@@ -0,0 +1 @@
+python -m experiments.particle_exp

setup.py

@@ -0,0 +1,6 @@
+from setuptools import find_packages, setup
+
+setup(
+    name='CopulaCPTS',
+    packages=find_packages(),
+)

covid_exp.py → src/experiments/covid_exp.py

@@ -4,7 +4,7 @@
 import torch
 from sklearn.preprocessing import StandardScaler
 import matplotlib.pyplot as plt
-from models import rnn, lstm, bjrnn, cfrnn, copulaCPTS, dplstm, vanila_copula
+from src.models import rnn, lstm, bjrnn, cfrnn, copulaCPTS, dplstm, vanila_copula
 
 class COVIDDataset(torch.utils.data.Dataset):
     def __init__(self, X, Y, sequence_lengths):

drone_exp.py → src/experiments/drone_exp.py

@@ -4,7 +4,7 @@
 import pandas as pd
 import torch
 import pickle
-from models import rnn, lstm, bjrnn, cfrnn, copulaCPTS, dplstm, vanila_copula
+from src.models import rnn, lstm, bjrnn, cfrnn, copulaCPTS, dplstm, vanila_copula
 
 
 datapath = '../../robotics_project/PythonRobotics/AerialNavigation/drone_3d_trajectory_following/data/dataset_smallnoise.npy'

particle_exp.py → src/experiments/particle_exp.py

@@ -8,7 +8,7 @@
 import os 
 
 
-from models import rnn, lstm, bjrnn, cfrnn, copulaCPTS, dplstm
+from src.models import rnn, lstm, bjrnn, cfrnn, copulaCPTS, dplstm
 
 def experiment(train, valid, test, name='exp'):
     rnn_model = rnn.rnn(embedding_size=24, input_size=2, output_size=2, horizon=24)