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OpenSwath

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Hannes Roest edited this page Mar 7, 2022 · 28 revisions

This page is intended to document how OpenSwath works on a technical level

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OpenSwathWorkflow

Introduction

Workflow

  1. Chromatogram Extraction

    1. Mapping Transitions To SWATHs
    2. Preparing the Batches
    3. Perform Extraction
    4. Write Out Chromatogram

  2. Peak Group Identification

    1. Pick Peaks in Each Chromatogram
    2. Create Peak Groups

  3. Scoring

    1. Chromatographic Scoring
    2. Library Scores
    3. Single Spectrum Scores
    4. Sonar Scores
    5. Unique Ion Signature Scores
    6. Intensity Score
    7. Elution Model Score

Extras

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