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Neighbourhood_Mask_outline_measure_object_distribution_pipeline.cppipe
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Neighbourhood_Mask_outline_measure_object_distribution_pipeline.cppipe
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CellProfiler Pipeline: http://www.cellprofiler.org
Version:4
DateRevision:315
GitHash:
ModuleCount:15
HasImagePlaneDetails:False
Images:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'Choose the whole `tiffs` folder.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
:\xff\xfe
Filter images?:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00o\x00n\x00l\x00y\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00e\x00x\x00t\x00e\x00n\x00s\x00i\x00o\x00n\x00 \x00d\x00o\x00e\x00s\x00 \x00i\x00s\x00i\x00m\x00a\x00g\x00e\x00)\x00 \x00(\x00d\x00i\x00r\x00e\x00c\x00t\x00o\x00r\x00y\x00 \x00d\x00o\x00e\x00s\x00n\x00o\x00t\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00r\x00e\x00g\x00e\x00x\x00p\x00 \x00"\x00\x5B\x00\\\x00\\\x00\\\x00\\\x00/\x00\x5D\x00\\\x00\\\x00.\x00"\x00)\x00
Metadata:[module_num:2|svn_version:\'Unknown\'|variable_revision_number:5|show_window:False|notes:\x5B\'The Metadata module optionally allows you to extract information describing your images (i.e, metadata) which will be stored along with your measurements. This information can be contained in the file name and/or location, or in an external file.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Extract metadata?:\xff\xfeN\x00o\x00
Metadata data type:\xff\xfeT\x00e\x00x\x00t\x00
Metadata types:\xff\xfe{\x00}\x00
Extraction method count:\xff\xfe1\x00
Metadata extraction method:\xff\xfeE\x00x\x00t\x00r\x00a\x00c\x00t\x00 \x00f\x00r\x00o\x00m\x00 \x00f\x00i\x00l\x00e\x00/\x00f\x00o\x00l\x00d\x00e\x00r\x00 \x00n\x00a\x00m\x00e\x00s\x00
Metadata source:\xff\xfeF\x00i\x00l\x00e\x00 \x00n\x00a\x00m\x00e\x00
Regular expression to extract from file name:\xff\xfe^\x00(\x00?\x00P\x00<\x00a\x00c\x00n\x00a\x00m\x00e\x00>\x00.\x00*\x00)\x00_\x00s\x00(\x00?\x00P\x00<\x00s\x00l\x00i\x00d\x00e\x00i\x00d\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00+\x00)\x00_\x00p\x00(\x00?\x00P\x00<\x00p\x00a\x00n\x00o\x00i\x00d\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00+\x00)\x00_\x00r\x00(\x00?\x00P\x00<\x00r\x00o\x00i\x00i\x00d\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00+\x00)\x00_\x00a\x00(\x00?\x00P\x00<\x00a\x00c\x00i\x00d\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00+\x00)\x00_\x00a\x00c\x00_\x00.\x00*\x00
Regular expression to extract from folder name:\xff\xfe(\x00?\x00P\x00<\x00D\x00a\x00t\x00e\x00>\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x004\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00_\x00\x5B\x000\x00-\x009\x00\x5D\x00{\x002\x00}\x00)\x00$\x00
Extract metadata from:\xff\xfeA\x00l\x00l\x00 \x00i\x00m\x00a\x00g\x00e\x00s\x00
Select the filtering criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00 \x00"\x00"\x00)\x00
Metadata file location:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
Match file and image metadata:\xff\xfe\x5B\x00\x5D\x00
Use case insensitive matching?:\xff\xfeN\x00o\x00
Metadata file name:\xff\xfe
NamesAndTypes:[module_num:3|svn_version:\'Unknown\'|variable_revision_number:8|show_window:False|notes:\x5B\'The NamesAndTypes module allows you to assign a meaningful name to each image by which other modules will refer to it.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Assign a name to:\xff\xfeI\x00m\x00a\x00g\x00e\x00s\x00 \x00m\x00a\x00t\x00c\x00h\x00i\x00n\x00g\x00 \x00r\x00u\x00l\x00e\x00s\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Name to assign these images:\xff\xfeD\x00N\x00A\x00
Match metadata:\xff\xfe\x5B\x00{\x00u\x00\'\x00c\x00e\x00l\x00l\x00m\x00a\x00s\x00k\x00\'\x00\x3A\x00 \x00u\x00\'\x00a\x00c\x00i\x00d\x00\'\x00,\x00 \x00u\x00\'\x00c\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00\'\x00\x3A\x00 \x00u\x00\'\x00a\x00c\x00i\x00d\x00\'\x00}\x00\x5D\x00
Image set matching method:\xff\xfeO\x00r\x00d\x00e\x00r\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Assignments count:\xff\xfe2\x00
Single images count:\xff\xfe0\x00
Maximum intensity:\xff\xfe1\x00
Process as 3D?:\xff\xfeN\x00o\x00
Relative pixel spacing in X:\xff\xfe1\x00.\x000\x00
Relative pixel spacing in Y:\xff\xfe1\x00.\x000\x00
Relative pixel spacing in Z:\xff\xfe1\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00c\x00o\x00n\x00t\x00a\x00i\x00n\x00r\x00e\x00g\x00e\x00x\x00p\x00 \x00"\x00\x5B\x000\x00-\x009\x00\x5D\x00+\x00\\\x00\\\x00.\x00t\x00i\x00f\x00"\x00)\x00
Name to assign these images:\xff\xfec\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00
Name to assign these objects:\xff\xfeC\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00b\x00i\x00t\x00-\x00d\x00e\x00p\x00t\x00h\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Select the rule criteria:\xff\xfea\x00n\x00d\x00 \x00(\x00f\x00i\x00l\x00e\x00 \x00d\x00o\x00e\x00s\x00 \x00e\x00n\x00d\x00w\x00i\x00t\x00h\x00 \x00"\x00_\x00m\x00a\x00s\x00k\x00.\x00t\x00i\x00f\x00f\x00"\x00)\x00
Name to assign these images:\xff\xfec\x00e\x00l\x00l\x00m\x00a\x00s\x00k\x00
Name to assign these objects:\xff\xfec\x00e\x00l\x00l\x00
Select the image type:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00 \x00i\x00m\x00a\x00g\x00e\x00
Set intensity range from:\xff\xfeI\x00m\x00a\x00g\x00e\x00 \x00m\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Maximum intensity:\xff\xfe2\x005\x005\x00.\x000\x00
Groups:[module_num:4|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\'The Groups module optionally allows you to split your list of images into image subsets (groups) which will be processed independently of each other. Examples of groupings include screening batches, microtiter plates, time-lapse movies, etc.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Do you want to group your images?:\xff\xfeN\x00o\x00
grouping metadata count:\xff\xfe1\x00
Metadata category:\xff\xfeS\x00i\x00t\x00e\x00
ConvertImageToObjects:[module_num:5|svn_version:\'Unknown\'|variable_revision_number:1|show_window:False|notes:\x5B\'Somehow converting in NamesAndTypes does not work in 3.1.5.\', \'Thus I load the image here and then relabel.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfec\x00e\x00l\x00l\x00m\x00a\x00s\x00k\x00
Name the output object:\xff\xfec\x00e\x00l\x00l\x00
Convert to boolean image:\xff\xfeN\x00o\x00
Preserve original labels:\xff\xfeN\x00o\x00
Background label:\xff\xfe0\x00
Connectivity:\xff\xfe0\x00
Smooth Multichannel:[module_num:6|svn_version:\'Unknown\'|variable_revision_number:5|show_window:False|notes:\x5B\'Removes outlier pixels.\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfec\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00
Name the output image:\xff\xfec\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00
Select smoothing method:\xff\xfeR\x00e\x00m\x00o\x00v\x00e\x00 \x00s\x00i\x00n\x00g\x00l\x00e\x00 \x00h\x00o\x00t\x00 \x00p\x00i\x00x\x00e\x00l\x00s\x00
Calculate artifact diameter automatically?:\xff\xfeY\x00e\x00s\x00
Typical artifact diameter:\xff\xfe1\x006\x00.\x000\x00
Edge intensity difference:\xff\xfe0\x00.\x001\x00
Clip intensities to 0 and 1?:\xff\xfeY\x00e\x00s\x00
Neighborhood filter size:\xff\xfe3\x00
Hot pixel threshold:\xff\xfe5\x000\x00.\x000\x00
Scale hot pixel threshold to image scale?:\xff\xfeY\x00e\x00s\x00
MeasureObjectIntensity:[module_num:7|svn_version:\'Unknown\'|variable_revision_number:3|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Hidden:\xff\xfe1\x00
Select an image to measure:\xff\xfec\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00
Select objects to measure:\xff\xfec\x00e\x00l\x00l\x00
MeasureObjectIntensityDistribution:[module_num:8|svn_version:\'Unknown\'|variable_revision_number:5|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Hidden:\xff\xfe1\x00
Hidden:\xff\xfe1\x00
Hidden:\xff\xfe1\x00
Hidden:\xff\xfe0\x00
Calculate intensity Zernikes?:\xff\xfeM\x00a\x00g\x00n\x00i\x00t\x00u\x00d\x00e\x00s\x00 \x00a\x00n\x00d\x00 \x00p\x00h\x00a\x00s\x00e\x00
Maximum zernike moment:\xff\xfe1\x00
Select an image to measure:\xff\xfec\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00
Select objects to measure:\xff\xfec\x00e\x00l\x00l\x00
Object to use as center?:\xff\xfeT\x00h\x00e\x00s\x00e\x00 \x00o\x00b\x00j\x00e\x00c\x00t\x00s\x00
Select objects to use as centers:\xff\xfeN\x00o\x00n\x00e\x00
Scale the bins?:\xff\xfeY\x00e\x00s\x00
Number of bins:\xff\xfe4\x00
Maximum radius:\xff\xfe1\x000\x000\x00
ExportToSpreadsheet:[module_num:9|svn_version:\'Unknown\'|variable_revision_number:12|show_window:False|notes:\x5B\'Save the data to csv.\', "Note that the intensity values are all scaled by a scaling factor corresponding to the bit depth (can be found in the Image.csv \'Scale\' column.", \'For uint16 everything is divided by 2**16 = 65535\'\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the column delimiter:\xff\xfeC\x00o\x00m\x00m\x00a\x00 \x00(\x00"\x00,\x00"\x00)\x00
Add image metadata columns to your object data file?:\xff\xfeN\x00o\x00
Select the measurements to export:\xff\xfeY\x00e\x00s\x00
Calculate the per-image mean values for object measurements?:\xff\xfeY\x00e\x00s\x00
Calculate the per-image median values for object measurements?:\xff\xfeN\x00o\x00
Calculate the per-image standard deviation values for object measurements?:\xff\xfeN\x00o\x00
Output file location:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00 \x00O\x00u\x00t\x00p\x00u\x00t\x00 \x00F\x00o\x00l\x00d\x00e\x00r\x00\x7C\x00
Create a GenePattern GCT file?:\xff\xfeN\x00o\x00
Select source of sample row name:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Select the image to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
Select the metadata to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
Export all measurement types?:\xff\xfeY\x00e\x00s\x00
Press button to select measurements:\xff\xfec\x00e\x00l\x00l\x00\x7C\x00L\x00o\x00c\x00a\x00t\x00i\x00o\x00n\x00_\x00C\x00e\x00n\x00t\x00e\x00r\x00M\x00a\x00s\x00s\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00Y\x00_\x00c\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00L\x00o\x00c\x00a\x00t\x00i\x00o\x00n\x00_\x00C\x00e\x00n\x00t\x00e\x00r\x00M\x00a\x00s\x00s\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00_\x00X\x00_\x00c\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00L\x00o\x00c\x00a\x00t\x00i\x00o\x00n\x00_\x00C\x00e\x00n\x00t\x00e\x00r\x00_\x00Y\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00L\x00o\x00c\x00a\x00t\x00i\x00o\x00n\x00_\x00C\x00e\x00n\x00t\x00e\x00r\x00_\x00X\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00R\x00a\x00d\x00i\x00a\x00l\x00D\x00i\x00s\x00t\x00r\x00i\x00b\x00u\x00t\x00i\x00o\x00n\x00_\x00Z\x00e\x00r\x00n\x00i\x00k\x00e\x00P\x00h\x00a\x00s\x00e\x00_\x00c\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00_\x001\x00_\x001\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00R\x00a\x00d\x00i\x00a\x00l\x00D\x00i\x00s\x00t\x00r\x00i\x00b\x00u\x00t\x00i\x00o\x00n\x00_\x00Z\x00e\x00r\x00n\x00i\x00k\x00e\x00P\x00h\x00a\x00s\x00e\x00_\x00c\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00_\x000\x00_\x000\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00R\x00a\x00d\x00i\x00a\x00l\x00D\x00i\x00s\x00t\x00r\x00i\x00b\x00u\x00t\x00i\x00o\x00n\x00_\x00Z\x00e\x00r\x00n\x00i\x00k\x00e\x00M\x00a\x00g\x00n\x00i\x00t\x00u\x00d\x00e\x00_\x00c\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00_\x001\x00_\x001\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00R\x00a\x00d\x00i\x00a\x00l\x00D\x00i\x00s\x00t\x00r\x00i\x00b\x00u\x00t\x00i\x00o\x00n\x00_\x00Z\x00e\x00r\x00n\x00i\x00k\x00e\x00M\x00a\x00g\x00n\x00i\x00t\x00u\x00d\x00e\x00_\x00c\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00_\x000\x00_\x000\x00,\x00c\x00e\x00l\x00l\x00\x7C\x00N\x00u\x00m\x00b\x00e\x00r\x00_\x00O\x00b\x00j\x00e\x00c\x00t\x00_\x00N\x00u\x00m\x00b\x00e\x00r\x00
Representation of Nan/Inf:\xff\xfeN\x00a\x00N\x00
Add a prefix to file names?:\xff\xfeN\x00o\x00
Filename prefix:\xff\xfeM\x00y\x00E\x00x\x00p\x00t\x00_\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
Data to export:\xff\xfeD\x00o\x00 \x00n\x00o\x00t\x00 \x00u\x00s\x00e\x00
Combine these object measurements with those of the previous object?:\xff\xfeN\x00o\x00
File name:\xff\xfeD\x00A\x00T\x00A\x00.\x00c\x00s\x00v\x00
Use the object name for the file name?:\xff\xfeY\x00e\x00s\x00
OverlayOutlines:[module_num:10|svn_version:\'Unknown\'|variable_revision_number:4|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Display outlines on a blank image?:\xff\xfeY\x00e\x00s\x00
Select image on which to display outlines:\xff\xfeR\x00e\x00s\x00c\x00a\x00l\x00e\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00
Name the output image:\xff\xfeO\x00r\x00i\x00g\x00O\x00v\x00e\x00r\x00l\x00a\x00y\x00
Outline display mode:\xff\xfeG\x00r\x00a\x00y\x00s\x00c\x00a\x00l\x00e\x00
Select method to determine brightness of outlines:\xff\xfeM\x00a\x00x\x00 \x00o\x00f\x00 \x00i\x00m\x00a\x00g\x00e\x00
How to outline:\xff\xfeI\x00n\x00n\x00e\x00r\x00
Select outline color:\xff\xfeR\x00e\x00d\x00
Select objects to display:\xff\xfec\x00e\x00l\x00l\x00
RescaleIntensity:[module_num:11|svn_version:\'Unknown\'|variable_revision_number:3|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the input image:\xff\xfec\x00h\x00a\x00n\x00n\x00e\x00l\x00s\x00_\x00s\x00p\x00l\x00i\x00t\x00_\x00F\x00i\x00l\x00t\x00e\x00r\x00e\x00d\x00
Name the output image:\xff\xfeR\x00e\x00s\x00c\x00a\x00l\x00e\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00
Rescaling method:\xff\xfeC\x00h\x00o\x00o\x00s\x00e\x00 \x00s\x00p\x00e\x00c\x00i\x00f\x00i\x00c\x00 \x00v\x00a\x00l\x00u\x00e\x00s\x00 \x00t\x00o\x00 \x00b\x00e\x00 \x00r\x00e\x00s\x00e\x00t\x00 \x00t\x00o\x00 \x00t\x00h\x00e\x00 \x00f\x00u\x00l\x00l\x00 \x00i\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00 \x00r\x00a\x00n\x00g\x00e\x00
Method to calculate the minimum intensity:\xff\xfeC\x00u\x00s\x00t\x00o\x00m\x00
Method to calculate the maximum intensity:\xff\xfeC\x00u\x00s\x00t\x00o\x00m\x00
Lower intensity limit for the input image:\xff\xfe0\x00.\x000\x00
Upper intensity limit for the input image:\xff\xfe1\x00.\x000\x00
Intensity range for the input image:\xff\xfe0\x00.\x000\x00,\x000\x00.\x000\x000\x000\x001\x00
Intensity range for the output image:\xff\xfe0\x00.\x000\x00,\x001\x00.\x000\x00
Select image to match in maximum intensity:\xff\xfeN\x00o\x00n\x00e\x00
Divisor value:\xff\xfe1\x00.\x000\x00
Divisor measurement:\xff\xfeN\x00o\x00n\x00e\x00
GrayToColor:[module_num:12|svn_version:\'Unknown\'|variable_revision_number:3|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select a color scheme:\xff\xfeR\x00G\x00B\x00
Select the image to be colored red:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
Select the image to be colored green:\xff\xfeR\x00e\x00s\x00c\x00a\x00l\x00e\x00I\x00n\x00t\x00e\x00n\x00s\x00i\x00t\x00y\x00
Select the image to be colored blue:\xff\xfeO\x00r\x00i\x00g\x00O\x00v\x00e\x00r\x00l\x00a\x00y\x00
Name the output image:\xff\xfeC\x00o\x00l\x00o\x00r\x00I\x00m\x00a\x00g\x00e\x00
Relative weight for the red image:\xff\xfe1\x00.\x000\x00
Relative weight for the green image:\xff\xfe1\x00.\x000\x00
Relative weight for the blue image:\xff\xfe1\x00.\x000\x00
Select the image to be colored cyan:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
Select the image to be colored magenta:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
Select the image to be colored yellow:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
Select the image that determines brightness:\xff\xfeL\x00e\x00a\x00v\x00e\x00 \x00t\x00h\x00i\x00s\x00 \x00b\x00l\x00a\x00c\x00k\x00
Relative weight for the cyan image:\xff\xfe1\x00.\x000\x00
Relative weight for the magenta image:\xff\xfe1\x00.\x000\x00
Relative weight for the yellow image:\xff\xfe1\x00.\x000\x00
Relative weight for the brightness image:\xff\xfe1\x00.\x000\x00
Hidden:\xff\xfe1\x00
Image name:\xff\xfeN\x00o\x00n\x00e\x00
Color:\xff\xfe#\x00f\x00f\x000\x000\x000\x000\x00
Weight:\xff\xfe1\x00.\x000\x00
SaveImages:[module_num:13|svn_version:\'Unknown\'|variable_revision_number:13|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the type of image to save:\xff\xfeI\x00m\x00a\x00g\x00e\x00
Select the image to save:\xff\xfeC\x00o\x00l\x00o\x00r\x00I\x00m\x00a\x00g\x00e\x00
Select method for constructing file names:\xff\xfeS\x00i\x00n\x00g\x00l\x00e\x00 \x00n\x00a\x00m\x00e\x00
Select image name for file prefix:\xff\xfeN\x00o\x00n\x00e\x00
Enter single file name:\xff\xfeO\x00v\x00e\x00r\x00l\x00a\x00y\x00
Number of digits:\xff\xfe4\x00
Append a suffix to the image file name?:\xff\xfeN\x00o\x00
Text to append to the image name:\xff\xfe
Saved file format:\xff\xfet\x00i\x00f\x00f\x00
Output file location:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00 \x00O\x00u\x00t\x00p\x00u\x00t\x00 \x00F\x00o\x00l\x00d\x00e\x00r\x00\x7C\x00
Image bit depth:\xff\xfe8\x00-\x00b\x00i\x00t\x00 \x00i\x00n\x00t\x00e\x00g\x00e\x00r\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
When to save:\xff\xfeE\x00v\x00e\x00r\x00y\x00 \x00c\x00y\x00c\x00l\x00e\x00
Record the file and path information to the saved image?:\xff\xfeN\x00o\x00
Create subfolders in the output folder?:\xff\xfeN\x00o\x00
Base image folder:\xff\xfeE\x00l\x00s\x00e\x00w\x00h\x00e\x00r\x00e\x00.\x00.\x00.\x00\x7C\x00
MeasureObjectNeighbors:[module_num:14|svn_version:\'Unknown\'|variable_revision_number:2|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select objects to measure:\xff\xfec\x00e\x00l\x00l\x00
Select neighboring objects to measure:\xff\xfec\x00e\x00l\x00l\x00
Method to determine neighbors:\xff\xfeA\x00d\x00j\x00a\x00c\x00e\x00n\x00t\x00
Neighbor distance:\xff\xfe5\x00
Retain the image of objects colored by numbers of neighbors?:\xff\xfeN\x00o\x00
Name the output image:\xff\xfeO\x00b\x00j\x00e\x00c\x00t\x00N\x00e\x00i\x00g\x00h\x00b\x00o\x00r\x00C\x00o\x00u\x00n\x00t\x00
Select colormap:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00
Retain the image of objects colored by percent of touching pixels?:\xff\xfeN\x00o\x00
Name the output image:\xff\xfeP\x00e\x00r\x00c\x00e\x00n\x00t\x00T\x00o\x00u\x00c\x00h\x00i\x00n\x00g\x00
Select colormap:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00
ExportToSpreadsheet:[module_num:15|svn_version:\'Unknown\'|variable_revision_number:12|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)|enabled:True|wants_pause:False]
Select the column delimiter:\xff\xfeC\x00o\x00m\x00m\x00a\x00 \x00(\x00"\x00,\x00"\x00)\x00
Add image metadata columns to your object data file?:\xff\xfeN\x00o\x00
Select the measurements to export:\xff\xfeN\x00o\x00
Calculate the per-image mean values for object measurements?:\xff\xfeN\x00o\x00
Calculate the per-image median values for object measurements?:\xff\xfeN\x00o\x00
Calculate the per-image standard deviation values for object measurements?:\xff\xfeN\x00o\x00
Output file location:\xff\xfeD\x00e\x00f\x00a\x00u\x00l\x00t\x00 \x00O\x00u\x00t\x00p\x00u\x00t\x00 \x00F\x00o\x00l\x00d\x00e\x00r\x00\x7C\x00
Create a GenePattern GCT file?:\xff\xfeN\x00o\x00
Select source of sample row name:\xff\xfeM\x00e\x00t\x00a\x00d\x00a\x00t\x00a\x00
Select the image to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
Select the metadata to use as the identifier:\xff\xfeN\x00o\x00n\x00e\x00
Export all measurement types?:\xff\xfeN\x00o\x00
Press button to select measurements:\xff\xfe
Representation of Nan/Inf:\xff\xfeN\x00a\x00N\x00
Add a prefix to file names?:\xff\xfeN\x00o\x00
Filename prefix:\xff\xfeM\x00y\x00E\x00x\x00p\x00t\x00_\x00
Overwrite existing files without warning?:\xff\xfeY\x00e\x00s\x00
Data to export:\xff\xfeO\x00b\x00j\x00e\x00c\x00t\x00 \x00r\x00e\x00l\x00a\x00t\x00i\x00o\x00n\x00s\x00h\x00i\x00p\x00s\x00
Combine these object measurements with those of the previous object?:\xff\xfeN\x00o\x00
File name:\xff\xfeD\x00A\x00T\x00A\x00.\x00c\x00s\x00v\x00
Use the object name for the file name?:\xff\xfeY\x00e\x00s\x00