DESCRIPTION

Package: catalogueR
Type: Package
Title: QTL data extraction and colocalization
Version: 1.0.1
Authors@R: 
    c(person(given = "Brian",
           family = "Schilder",
           role = c("cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
    person(given = "Jack",
           family = "Humphrey",
           role = c("aut"),
           email = "Jack.Humphrey@mssm.edu",
           comment = c(ORCID = "0000-0002-6274-6620")),
    person(given = "Towfique",
           family = "Raj",
           role = c("aut"),
           email = "towfique.raj@mssm.edu",
           comment = c(ORCID = "0000-0002-9355-5704"))
           ) 
Description: Rapid querying, colocalization, and plotting of summary stats from the [*eQTL Catalogue*](https://www.ebi.ac.uk/eqtl/). *eQTL Catalogue* currently contains >100 datasets from 20 different studies (including GTEx), across many tissues/cell types/conditions.  
Encoding: UTF-8
LazyData: true
License: GPL-3
URL: https://github.com/RajLabMSSM/catalogueR
BugReports: https://github.com/RajLabMSSM/catalogueR/issues
Depends: R (>= 3.6.0)
biocViews:
Imports: 
  echoconda,
  echodata,
  echotabix,
  dplyr,
  tidyr,
  utils,
  data.table,
  piggyback,
  parallel,
  ggplot2,
  ggrepel,
  patchwork,
  scales,
  stringr,
  rlang,
  jsonlite, 
  coloc, 
  AnnotationDbi,
  EnsDb.Hsapiens.v75
Suggests:
  echoLD,
  markdown,
  rmarkdown,
  magick,
  methods,
  devtools,
  badger, 
  BiocStyle,
  testthat (>= 3.0.0)
Remotes:
  github::RajLabMSSM/echoconda,
  github::RajLabMSSM/echotabix,
  github::RajLabMSSM/echodata,
  github::RajLabMSSM/echoLD
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Config/testthat/edition: 3