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Add tstep and etemp parameters to the QCxMS tool #586

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This PR introduces the advanced parameters tstep and etemp to the QCxMS neutral run. It also removes the sentence about CID, which is not implemented in this version, from the tmax parameter's help description.

closes #585

@wverastegui wverastegui changed the title Wverastegui/issue585 Add tstep and etemp parameters to the QCxMS tool Sep 26, 2024
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Add extra advanced qcxms parameters
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