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Galaxy wrappers for the MFAssignR functions #567

Merged
merged 39 commits into from
Aug 15, 2024
Merged

Galaxy wrappers for the MFAssignR functions #567

merged 39 commits into from
Aug 15, 2024

Commits on Aug 7, 2024

  1. initial commit of the noise estimation functions

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  2. wrapper for the MFAssignCHO function

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  3. wrapper for the mfassign function

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  4. help section adjusted

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  5. recalibration tools wrappers

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  6. macro updated

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  7. write.table with tab as separator

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  8. description updated

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  9. help section updated

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  10. label adjusted

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  11. macro updated

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  12. input moved from macro to recallist.xml

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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  13. series defined automatically

    @KristinaGomoryova
    KristinaGomoryova committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. by ${tool.name} on ${on_string} added

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  2. help text updated

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  3. inputs separated from macro

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  4. macro updated

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  5. by ${tool.name} on ${on_string} added

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  6. help done via help.xml

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  7. typo corrected

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  8. Merge branch 'master' into mfassignr_kmdnoise

    @hechth
    hechth committed Aug 8, 2024
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  9. edam topics moved back to individual xml

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  10. edam_data removed

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  11. fixed linting

    @hechth
    hechth committed Aug 8, 2024
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  12. replaced tool version with token

    @hechth
    hechth committed Aug 8, 2024
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  13. profile="23.0" added

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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  14. typo corrected

    @KristinaGomoryova
    KristinaGomoryova committed Aug 8, 2024
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Commits on Aug 9, 2024

  1. updated command section

    @hechth
    hechth committed Aug 9, 2024
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  2. fixed wrong script name

    @hechth
    hechth committed Aug 9, 2024
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Commits on Aug 13, 2024

  1. updated default

    @hechth
    hechth committed Aug 13, 2024
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Commits on Aug 15, 2024

  1. Added first section of tests

    @hechth
    hechth committed Aug 15, 2024
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  2. finalized tests

    @hechth
    hechth committed Aug 15, 2024
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  3. removed file and changed check to size

    @hechth
    hechth committed Aug 15, 2024
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  4. updated recal mzplot assertion

    @hechth
    hechth committed Aug 15, 2024
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  5. made testing for recallist less stringent

    @hechth
    hechth committed Aug 15, 2024
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  6. test updates for CI

    @hechth
    hechth committed Aug 15, 2024
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  7. updated test and data

    @hechth
    hechth committed Aug 15, 2024
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  8. updated recalibrants

    @hechth
    hechth committed Aug 15, 2024
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  9. Update tools/mfassignr/mfassignr_isofiltr.xml 

    Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
    @hechth @bgruening
    hechth and bgruening committed Aug 15, 2024
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