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Galaxy wrappers for the MFAssignR functions #567

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merged 39 commits into from
Aug 15, 2024

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KristinaGomoryova
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This PR includes galaxy wrappers for all the MFAssignR functions except for the IsoFiltR function, which was solved in PR #565.

Closes #473
Closes #472
Closes #470
Closes #469

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@bgruening
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Very cool @KristinaGomoryova!

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help= "Input data frame - output from MFAssign or MFAssignCHO. Recommended are 'Unambiguous' assignments."/>
</inputs>
<outputs>
<data name="recal_series" format="tabular" label="Recalibration series by ${tool.name} on ${on_string}"/>
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think about adding column names to your tabular files - will improve UX

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The tools are quite specific and most inputs are outputs from other tools, so I don't expect people to come with their own files. Or do you mean something else than adding the colnames to the help text?

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This creates some very tight coupling between the package and the Galaxy tools :/

hechth and others added 2 commits August 15, 2024 13:26
Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
@hechth hechth merged commit 87bb82e into RECETOX:master Aug 15, 2024
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