From 7d8d3ddd4f6092a2d6e4381d0da6cce8e172fabb Mon Sep 17 00:00:00 2001 From: Brandon Walker Date: Wed, 30 Oct 2024 11:27:50 -0400 Subject: [PATCH] openfold temp patch --- {cwl_adapters => non_ci/cwl}/openfold.cwl | 4 ++-- {examples/openfold => non_ci/workflows}/Dockerfile | 0 {examples/openfold => non_ci/workflows}/openfold.wic | 0 3 files changed, 2 insertions(+), 2 deletions(-) rename {cwl_adapters => non_ci/cwl}/openfold.cwl (99%) rename {examples/openfold => non_ci/workflows}/Dockerfile (100%) rename {examples/openfold => non_ci/workflows}/openfold.wic (100%) diff --git a/cwl_adapters/openfold.cwl b/non_ci/cwl/openfold.cwl similarity index 99% rename from cwl_adapters/openfold.cwl rename to non_ci/cwl/openfold.cwl index 4c01fe1..186001d 100644 --- a/cwl_adapters/openfold.cwl +++ b/non_ci/cwl/openfold.cwl @@ -19,11 +19,11 @@ hints: DockerRequirement: dockerPull: polusai/openfold-tool@sha256:84e1bb34f9d7ccfbd670e76d3f602334960f65ac091f96e9956ceeef985a9ffe dockerOutputDirectory: /app - + requirements: EnvVarRequirement: envDef: - CONDA_PREFIX: /opt/conda/ + CONDA_PREFIX: /opt/conda/ # needed because https://github.com/aqlaboratory/openfold/blob/6f63267114435f94ac0604b6d89e82ef45d94484/scripts/utils.py#L9 InlineJavascriptRequirement: {} InitialWorkDirRequirement: diff --git a/examples/openfold/Dockerfile b/non_ci/workflows/Dockerfile similarity index 100% rename from examples/openfold/Dockerfile rename to non_ci/workflows/Dockerfile diff --git a/examples/openfold/openfold.wic b/non_ci/workflows/openfold.wic similarity index 100% rename from examples/openfold/openfold.wic rename to non_ci/workflows/openfold.wic