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Taxonomic tree #32
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Thank you! It's one of the planned features. I think @richardreeve has done the work on Phylo.jl to make it relatively easy to build, and that's definitely on my list. |
I have made a documentation page with an example - I think it's a good idea, but I would like to think a bit about the best way to express it. It can be something like RootedTree(t::Vector{NCBITaxon}) # Or other types from Phylo Or it can be a convert function. I'm unsure about the API. @richardreeve and @mkborregaard do you have preferences? This will be a post |
@diegozea here is the use-case with |
Thanks! That example is really useful :) One thing; do you know why the tips are not being shown? I believe it is a problem with the plot recipe, as |
There seems to be a bug in the plot recipe. It must be due to changes in Plots, as this did work earlier. Could you open a Phylo issue for it? |
Hi!
First, thank you very much for this package! It has been handy for me.
I think that it would be great to have an integration with Phylo.jl to easily get the common taxonomic tree for a set of taxa as in the NCBI site. That could be really useful for visualization and exploration.
Ideally, this can be a single function, similar to
lineage
and most probably depending on that, that also acceptsstop_at
, but that takes a list/set ofNCBITaxon
s. For example:Best regards,
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