pytest.yml

name: pytest

on:
  push:
    branches:
      - main
      - hotfixes
      - develop 
  pull_request:
    branches:
      - main
      - hotfixes
      - develop 

jobs:
  build:

    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        include:
          - name: "Debian 11"
            python-version: "3.9"
            postgres-version: 13
            postgis-version: 3.2

    name: ${{ matrix.name }}

    services:
      postgres:
        image: postgis/postgis:${{ matrix.postgres-version }}-${{ matrix.postgis-version }}
        env:
          POSTGRES_DB: geonature2db
          POSTGRES_PASSWORD: geonatpasswd
          POSTGRES_USER: geonatadmin
        ports:
          - 5432:5432
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5
      redis:
        image: redis
        ports:
          - 6379:6379
        options: >-
          --health-cmd "redis-cli ping"
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    steps:
    - name: Add postgis_raster database extension
      if: ${{ matrix.postgis-version >= 3 }}
      run: |
        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "postgis_raster";'
      env:
        PGPASSWORD: geonatpasswd
    - name: Add database extensions
      run: |
        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "hstore";'
        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "uuid-ossp";'
        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "pg_trgm";'
        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "unaccent";'
        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "ltree";'
      env:
        PGPASSWORD: geonatpasswd
    - uses: actions/checkout@v2
      with:
        submodules: recursive
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install GDAL
      run: |
        sudo apt update
        sudo apt install -y libgdal-dev
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install \
          -e ..[tests] \
          -r requirements-dev.txt
      working-directory: ./dependencies/GeoNature/backend
    - name: Install monitoring module
      run: |
        python -m pip install -e .
      working-directory: .
    - name: Install database
      run: |
        dependencies/GeoNature/install/03b_populate_db.sh
      env:
        GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml
        srid_local: 2154
        install_bdc_statuts: false
        taxref_region: fr
        add_sample_data: true
        install_sig_layers: true
        install_grid_layer_5: false
        install_grid_layer_10: false
        install_ref_sensitivity: false
    - name: Install monitoring module database
      run: |
        geonature upgrade-modules-db MONITORINGS
      env:
        GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml
    - name: Test with pytest
      run: |
        pytest -v --cov --cov-report xml
      env:
        GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml
    - name: Upload coverage to Codecov
      if: ${{ matrix.name == 'Debian 11' }}
      uses: codecov/codecov-action@v2
      with:
        flags: pytest