manifest.json

{
	"name": "freeqc-fw-hpc",
	"label": "freeqc-fw-hpc: Freesurfer quality and segmentation values",
	"description": "Calculates quality metrics and structural values using freesurfer output from fMRIPrep [CUBIC]",
	"version": "0.0.6_6.0.1",
  "custom": {
		"gear-builder": {
			"category": "analysis",
			"image": "pennbbl/freeqc-fw-hpc"
		},
    "flywheel": {"suite": "PennBBL"}
  },
	"author": "Ellyn Butler",
	"maintainer": "Ellyn Butler",
	"cite": "github.com/pennbbl/freeqc-fw-hpc",
	"license": "BSD-3-Clause",
	"source": "https://github.com/PennBBL/freeqc-fw-hpc",
	"inputs": {
		"api_key": {
			"base": "api-key"
		},
		"fmriprepdir": {
			"base": "file",
			"description": "FMRIprep output directory",
			"optional": false
		},
			"freesurfer_license": {
				"base": "file",
				"description": "FreeSurfer license file, provided during registration with FreeSurfer. This file will be copied to the $FSHOME directory and used during execution of the Gear.",
				"optional": false
			}
	},
	"config": {
		"save_partial_outputs": {
			"description": "Zip and save output directory contents on an algorithm failure. [default=false]",
			"type": "boolean",
			"default": false
		}
	}
}