diff --git a/docs/changelog.md b/docs/changelog.md index 2d3db06..25514dd 100644 --- a/docs/changelog.md +++ b/docs/changelog.md @@ -6,6 +6,12 @@ nav_order: 99 # Version changelog +**0.1.0** + * Update to CLI + * Add skera `split` / `undo` tools + * Introduce SEGMENT read type + * Bug fixes + **0.0.102** * Improve runtime diff --git a/docs/index.md b/docs/index.md index 46c083d..226641c 100644 --- a/docs/index.md +++ b/docs/index.md @@ -22,8 +22,7 @@ _Skera_ splits arrayed PacBio reads at adapter positions generating ([read-segments](/read-segments)). For each input/parent read (e.g. HiFi) _skera_ will create multiple bam records, one for each fragment. A parent read can contain many fragments. _Skera_ has two major functions, split and undo. -_Skera_ undo reconstitutes the original parent read from input fragments; -_Skera_ undo is not yet implemented. +_Skera_ undo reconstitutes the original parent read from input fragments. ## Availability The latest `skera` can be installed via the bioconda. @@ -33,7 +32,7 @@ page](https://github.com/PacificBiosciences/pbbioconda) for information on Installation, Support, License, Copyright, and Disclaimer. ## Versions -Version **0.0.102**: [Full changelog here](/changelog) +Version **0.1.0**: [Full changelog here](/changelog) ## Input ### Reads @@ -43,6 +42,10 @@ HiFi reads in PacBio BAM format. [Adapters](/adapters) in FASTA format. ## Execution -Skera run on HiFi reads in PacBio BAM format: +Skera split run on HiFi reads in PacBio BAM format: - skera .hifi_reads.bam adapters.fasta .skera.bam + skera split .hifi_reads.bam adapters.fasta .skera.bam + +Skera undo: + + skera undo .skera.bam .undo.bam \ No newline at end of file