From 9521bec4f6cda76bc448ae7829686cbc92c9a73a Mon Sep 17 00:00:00 2001
From: William Rowell <wrowell@pacificbiosciences.com>
Date: Tue, 13 Feb 2024 18:47:39 -0800
Subject: [PATCH 1/3] feat(trgt): Updated to TRGT 0.8.0

---
 workflows/sample_analysis/sample_analysis.wdl | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/workflows/sample_analysis/sample_analysis.wdl b/workflows/sample_analysis/sample_analysis.wdl
index 09dceef6..4f62c82f 100644
--- a/workflows/sample_analysis/sample_analysis.wdl
+++ b/workflows/sample_analysis/sample_analysis.wdl
@@ -502,7 +502,7 @@ task trgt {
 	}
 
 	runtime {
-		docker: "~{runtime_attributes.container_registry}/trgt@sha256:07e9d2be1590fc1dd45e6e2a6b9f5869ee6d83f5a1ca47c8ea84e114b70573b6"
+		docker: "~{runtime_attributes.container_registry}/trgt@sha256:88eaa6b6c7d440a48d7f0036e46a2ce4b37cf5be8bd84921eaa69e3c11b98556"
 		cpu: threads
 		memory: "4 GB"
 		disk: disk_size + " GB"
@@ -545,7 +545,7 @@ task coverage_dropouts {
 	}
 
 	runtime {
-		docker: "~{runtime_attributes.container_registry}/trgt@sha256:07e9d2be1590fc1dd45e6e2a6b9f5869ee6d83f5a1ca47c8ea84e114b70573b6"
+		docker: "~{runtime_attributes.container_registry}/trgt@sha256:88eaa6b6c7d440a48d7f0036e46a2ce4b37cf5be8bd84921eaa69e3c11b98556"
 		cpu: threads
 		memory: "4 GB"
 		disk: disk_size + " GB"

From 78d735429e569a553cf8bfffe81cd85908aeaee7 Mon Sep 17 00:00:00 2001
From: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Date: Fri, 16 Feb 2024 21:22:07 +0000
Subject: [PATCH 2/3] update wdl-ci config file after successful tests

---
 wdl-ci.config.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/wdl-ci.config.json b/wdl-ci.config.json
index 07ac15d7..179ef52d 100644
--- a/wdl-ci.config.json
+++ b/wdl-ci.config.json
@@ -142,7 +142,7 @@
         },
         "trgt": {
           "key": "trgt",
-          "digest": "uaowbumdens55465girwarokc46hwgco",
+          "digest": "fyt3gqmt5tfykbls33kbr62nw3d4rvhj",
           "tests": [
             {
               "inputs": {
@@ -178,7 +178,7 @@
         },
         "coverage_dropouts": {
           "key": "coverage_dropouts",
-          "digest": "3wfgwjflppb5tifrwycmjzy727p7wzyi",
+          "digest": "iac5c3nzugilbarb4xsat37n2j5hjov4",
           "tests": [
             {
               "inputs": {

From 5a18241fb37fdc560d626a41678930c7ecc5844c Mon Sep 17 00:00:00 2001
From: William Rowell <wrowell@pacificbiosciences.com>
Date: Fri, 16 Feb 2024 13:31:42 -0800
Subject: [PATCH 3/3] docs(trgt): Update documentation with new trgt version.

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index a03c771c..b2d3e201 100644
--- a/README.md
+++ b/README.md
@@ -270,7 +270,7 @@ The Docker image used by a particular step of the workflow can be identified by
 | samtools | <ul><li>[samtools 1.14](https://github.com/samtools/samtools/releases/tag/1.14)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/samtools) |
 | slivar | <ul><li>[slivar 0.2.2](https://github.com/brentp/slivar/releases/tag/v0.2.2)</li><li>[bcftools 1.14](https://github.com/samtools/bcftools/releases/tag/1.14)</li><li>[vcfpy 0.13.3](https://github.com/bihealth/vcfpy/releases/tag/v0.13.3)</li><li>[pysam 0.19.1](https://github.com/pysam-developers/pysam/releases/tag/v0.19.1)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/slivar) |
 | svpack | <ul><li>[svpack 36180ae6](https://github.com/PacificBiosciences/svpack/tree/a82598ebc4013bf32e70295b83b380ada6302c4a)</li><li>[htslib 1.18](https://github.com/samtools/htslib/releases/tag/1.18)</li><li>[pysam 0.21.0](https://github.com/pysam-developers/pysam/releases/tag/v0.21.0)</li> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/8edbc516abc0ff43ac279b48018003923721b054/docker/svpack) |
-| trgt | <ul><li>[trgt 0.7.0](https://github.com/PacificBiosciences/trgt/releases/tag/v0.7.0)</li><li>[samtools 1.18](https://github.com/samtools/samtools/releases/tag/1.18)</li><li>[bcftools 1.18](https://github.com/samtools/bcftools/releases/tag/1.18)</li><li>[pysam 0.21.0](https://github.com/pysam-developers/pysam/releases/tag/v0.21.0)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/9aae7d50a4beb08a1869dd3ce1a0567ee4e5cbc2/docker/trgt) |
+| trgt | <ul><li>[trgt 0.8.0](https://github.com/PacificBiosciences/trgt/releases/tag/v0.7.0)</li><li>[samtools 1.18](https://github.com/samtools/samtools/releases/tag/1.18)</li><li>[bcftools 1.18](https://github.com/samtools/bcftools/releases/tag/1.18)</li><li>[pysam 0.21.0](https://github.com/pysam-developers/pysam/releases/tag/v0.21.0)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3bbc033f8f942b10a304b4fa907957a789c73ef7/docker/trgt) |
 
 ---