From 0750d30df6eb4979f96320e4966f5bcf3a6d3f40 Mon Sep 17 00:00:00 2001
From: Harriet Dashnow <h.dashnow@gmail.com>
Date: Tue, 16 Oct 2018 15:24:34 +1100
Subject: [PATCH] update bpipe.config examples/template

---
 pipelines/config-examples/bpipe.config_broad    | 14 --------------
 pipelines/config-examples/bpipe.config_meerkat  |  9 ++++-----
 pipelines/config-examples/bpipe.config_template |  2 +-
 3 files changed, 5 insertions(+), 20 deletions(-)
 delete mode 100644 pipelines/config-examples/bpipe.config_broad

diff --git a/pipelines/config-examples/bpipe.config_broad b/pipelines/config-examples/bpipe.config_broad
deleted file mode 100644
index 3c7b25f..0000000
--- a/pipelines/config-examples/bpipe.config_broad
+++ /dev/null
@@ -1,14 +0,0 @@
-use="Java-1.8"
-
-commands {
-    bwamem {
-        memory="32g"
-        threads=8
-        walltime="168:00:00"
-    }
-
-
-    bedtools {
-        memory=8
-    }
-}
diff --git a/pipelines/config-examples/bpipe.config_meerkat b/pipelines/config-examples/bpipe.config_meerkat
index b298516..f20bbf6 100644
--- a/pipelines/config-examples/bpipe.config_meerkat
+++ b/pipelines/config-examples/bpipe.config_meerkat
@@ -1,15 +1,14 @@
+// Defaults
 walltime="04:00:00"
+memory="8g"
 modules="java"
 
 commands {
+
     bwamem {
         walltime="48:00:00"
         procs=8
-        memory=32
+        memory="32g"
     }
 
-
-    bedtools {
-        memory=8
-    }
 }
diff --git a/pipelines/config-examples/bpipe.config_template b/pipelines/config-examples/bpipe.config_template
index 60b9f4a..ea9e978 100644
--- a/pipelines/config-examples/bpipe.config_template
+++ b/pipelines/config-examples/bpipe.config_template
@@ -6,7 +6,7 @@ memory="8g"
 commands {
 
     mosdepth {
-        memory="4g"
+        memory="8g"
     }
 
     bwamem {