-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathindex.html
347 lines (335 loc) · 19.8 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
<!DOCTYPE HTML>
<!--
Landed by HTML5 UP
html5up.net | @ajlkn
Free for personal and commercial use under the CCA 3.0 license (html5up.net/license)
-->
<html>
<head>
<title>Open Neuroimaging Laboratory</title>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<!--[if lte IE 8]><script src="assets/js/ie/html5shiv.js"></script><![endif]-->
<link rel="stylesheet" href="assets/css/main.css" />
<!--[if lte IE 9]><link rel="stylesheet" href="assets/css/ie9.css" /><![endif]-->
<!--[if lte IE 8]><link rel="stylesheet" href="assets/css/ie8.css" /><![endif]-->
</head>
<body class="landing">
<div id="page-wrapper">
<!-- Header -->
<header id="header" style="background: #272833; position: fixed">
<h1 id="logo"><a href="index.html"> Open Neuroimaging Laboratory</a></h1>
<nav id="nav">
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="start/index.html" class="button special">Start</a></li>
<li>
<a href="#">About</a>
<ul>
<li><a href="#one">What it is</a></li>
<li><a href="#two">Purpose and need</a></li>
<li><a href="#three">What we built</a></li>
<li><a href="#four">Who we are</a></li>
<li><a href="#five">Join us</a></li>
</ul>
</li>
<!--
<li>
<a href="#">Related Projects</a>
<ul>
<li><a href="left-sidebar.html">BrainBox</a></li>
<li><a href="right-sidebar.html">MetaSearch</a></li>
</ul>
</li>
-->
<li><a href="https://github.com/openNeuroLab" class="icon alt fa-github"><span class="label">GitHub</span></a></li>
<!--
<li><a href="http://event.capconcorp.com/wp/osp/" class="button special">Vote</a></li>
-->
<!--<li><a href="elements.html">Elements</a></li>
-->
</ul>
</nav>
</header>
<!-- Banner -->
<section id="banner">
<div class="content">
<header>
<h2>Open Neuroimaging Laboratory</h2>
<h7>Find. Access. Improve. Reuse.</h7>
<p>Lowering barriers to data and tools for<br />
open collaborative science of the brain.</p>
<br />
<ul class="actions">
<!--<li><a href="http://brainbox.pasteur.fr" class="button">BrainBox</a></li>-->
<!--<li><a href="http://brainbox.pasteur.fr/mri?url=http://braincatalogue.org/data/Night_monkey/MRI.nii.gz&view=cor&slice=70" class="button">BrainBox</a></li>-->
<li><a href="http://brainbox.pasteur.fr/mri?url=http://braincatalogue.org/data/Night_monkey/MRI.nii.gz" class="button">BrainBox</a></li>
<li><a href="http://openneu.ro/metasearch" class="button">MetaSearch</a></li>
<li><a href="start/index.html" class="button special">Start</a></li>
</ul>
<p>For an overview, use the arrows.</p>
<a href="#one" class="goto-next scrolly">Next</a>
</header>
<span class="image"><img src="images/RD.svg" alt="" /></span>
</div>
</section>
<!-- One -->
<section id="one" class="spotlight style1 bottom">
<span class="image fit main"><img src="images/brains.jpg" alt="" /></span>
<div class="content">
<div class="container">
<div class="row">
<div class="4u 12u$(medium)">
<header>
<h2>What is the Open Neuroimaging Laboratory</h2>
<p>A Web platform for collaborating on open brain imaging data</p>
</header>
<ul class="actions">
<li><a href="https://doi.org/10.3897/rio.2.e9113" target="_blank" class="button">Read Phase I Proposal</a></li>
</ul>
</div>
<div class="4u 12u$(medium)">
<p>The Open Neuroimaging Laboratory is a collaborative platform
that facilitates finding, improving, and reusing the massive
amount of neuroimaging data available on the Web. This data
represents an enormous funding effort and the time and goodwill
of thousands of participants: researchers, clinicians, patients,
and their families. We want to maximize its use in brain research,
medicine, education, and to advance open science.</p>
</div>
<div class="4u$ 12u$(medium)">
<p>Our prototype applications transform these static data into
"living" matter for collaborative curation and analysis
using only a Web browser. No data are downloaded, no software
installed. Users can find data, collaborate online, and incrementally
improve each other's work. This increases scientific
efficiency, improves public data quality, and reduces
redundant effort. Our platform lowers the barriers for
researchers, students, and citizen scientists to fuel scientific
discovery.</p>
</div>
</div>
</div>
</div>
<a href="#two" class="goto-next scrolly">Next</a>
</section>
<!-- Two -->
<section id="two" class="spotlight style2 bottom">
<span class="image fit main"><img src="images/eigen_brain.jpg" alt="" /></span>
<div class="content">
<div class="container">
<div class="row">
<div class="4u 12u$(medium)">
<header>
<h2>Purpose and need</h2>
<!--
<p>Nunc commodo accumsan eget id nisi eu col volutpat magna</p>
-->
</header>
</div>
<div class="4u 12u$(medium)">
<p>Significant investment has been made in collecting and sharing
brain imaging data for thousands of individuals. One key
challenge, however, limits the usability of this data: In order
to work with it, researchers need to download the data locally;
and <b>curation, editing and analysis are then done redundantly by
each research group</b>. This process is painstaking and a
large proportion of the shared data is never analysed, wasting
time and funding.
</p>
</div>
<div class="4u 12u$(medium)">
<p>Our virtual neuroimaging laboratory enables using and improving
open resources through social collaboration. The laboratory also
provides users to find and access public data and metadata, and
add to the growing database of accessible data.
By lowering the requirements for working on shared data to just
a Web browser, it allows not only researchers, but also citizen
scientists to contribute to scientific discovery.
</p>
</div>
</div>
</div>
<!--
<ul class="actions">
<li><a href="#" class="button">Learn More</a></li>
</ul>
-->
</div>
<a href="#three" class="goto-next scrolly">Next</a>
</section>
<!-- Three -->
<section id="three" class="spotlight style3 bottom">
<span class="image fit main bottom"><img src="images/PLI_image.jpg" alt="" /></span>
<div class="content">
<div class="container">
<div class="row">
<div class="4u 12u$(medium)">
<header>
<h2>What we built</h2>
<p>Prototype applications to find, access, and improve open data.</p>
<ul class="actions">
<li><a href="http://brainbox.pasteur.fr" class="button special fit">BrainBox</a></li>
<li><a href="http://openneu.ro/metasearch" class="button special fit">MetaSearch</a></li>
</ul>
</header>
</div>
<div class="4u 12u$(medium)">
<p>BrainBox – a Web app to work with shared brain imaging data
directly online. Progress becomes incremental: each researcher's
work improves that of the whole community. The community can then
tackle projects that would be impossible for individual research
groups. BrainBox enables a growing catalogue of all MRI data
available online, currently indexing more than 6000 links.
</p>
</div>
<div class="4u 12u$(medium)">
<p>MetaSearch, another Web app, complements BrainBox by providing
access to additional metadata about participants (e.g., age, sex,
IQ), but also other imaging information (e.g., functional MRI,
diffusion fMRI). It harmonizes the disparate sources of information
and aggregates these metadata in one place, provides an interactive
interface to the user to filter this rich repository of public data,
and find data of relevance.
<!--
By only considering data that are
publicly and openly available at a URL, MetaSearch also provides
immediate access to the data for applications such as BrainBox.
Our tool MetaSearch provides an interface for
filtering metadata associated with these brain images and
finding relevant data across all different projects.
-->
</p>
</div>
</div>
</div>
</div>
<a href="#four" class="goto-next scrolly">Next</a>
</section>
<!-- Four -->
<section id="four" class="wrapper style1 special fade-up">
<div class="container">
<header class="major">
<h2>Our Team</h2>
<!--<p>Iaculis ac volutpat vis non enim gravida nisi faucibus posuere arcu consequat</p>
-->
</header>
<div class="box alt">
<div class="row uniform">
<section class="3u 5u(medium) 10u$(xsmall)">
<!--<span class="image fit"><img src="https://avatars3.githubusercontent.com/u/2310732?v=3&s=400" style="border-radius: 100%; display: block" alt="" /></span>-->
<span class="image fit"><img src="images/roberto.jpg" style="border-radius: 100%; display: block" alt="" /></span>
<h3>Roberto Toro</h3>
<p>Department of Neuroscience of the Institut Pasteur in Paris.
Interested in the development and evolution of the
brain. Uses mathematical modelling, MRI and genetics.
Studies how genetic and environmental factors
determine neuroanatomical diversity. Leads development of
Web tools for online
collaboration in neuroscience: <a href="http://brainspell.org/" target="_blank">BrainSpell</a>,
<a href="http://braincatalogue.org/" target="_blank">Brain Catalogue</a>, and
<a href="http://microdraw.pasteur.fr/" target="_blank">MicroDraw</a>
</p>
</section>
<section class="3u 5u$(medium) 10u$(xsmall)">
<span class="image fit"><img src="https://avatars3.githubusercontent.com/u/6297454?v=3&s=400" style="border-radius: 100%; display: block" alt="" /></span>
<h3>Katja Heuer</h3>
<p>Max Planck Institute for Human Cognitive and Brain Sciences.
A philologist, neuroscientist and an artist. Studies the
development of the human brain. Works
on projects at the interface between art and neuroscience:
<a href="https://youtu.be/LtsBZlw5nQI" target="_blank">The Art of MR. Staging the Connectome</a>,
<a href="https://www.youtube.com/watch?v=jtwKYvI8tVQ" target="_blank">Fire & Wire</a>, and
<a href="http://openscience.cbs.mpg.de/brainnetworks/" target="_blank">Surf the connectome. 3D functional and structural brain networks in the cloud</a>
</p>
</section>
<section class="3u 5u(medium) 10u$(xsmall)">
<span class="image fit"><img src="https://avatars2.githubusercontent.com/u/1858187?v=3&s=400" style="border-radius: 100%; display: block" alt="" /></span>
<h3>Amy Lee Sterling</h3>
<p>Executive Director of <a href="http://eyewire.org/" target="_blank">EyeWire</a>,
a game to map the brain. She has advised The White House OSTP
and the US Senate on crowdsourcing and open innovation.
She also helped create the world’s
first neuroscience virtual reality experience, and curates
the NIH 3D Print Exchange Neuroscience. A long time TEDster
and founder of the <a href="http://t.signauxcinq.com/link?url=http%3A%2F%2Fsoundcloud.com%2Ftedxglobalmusicproject&ukey=agxzfnNpZ25hbHNjcnhyGAsSC1VzZXJQcm9maWxlGICAgKzq9rwIDA&k=12aa3814-4d41-4c38-f67c-7933570b6348" target="_blank">TEDx Music Project</a>.
</p>
</section>
<section class="3u$ 5u$(medium) 10u$(xsmall)">
<!--<span class="image fit"><img src="https://avatars2.githubusercontent.com/u/184063?v=3&s=400" style="border-radius: 100%; display: block" alt="" /></span>-->
<span class="image fit"><img src="images/satra.png" style="border-radius: 100%; display: block" alt="" /></span>
<h3>Satrajit Ghosh</h3>
<p>McGovern Institute for Brain Research at MIT. Works on
biomarker development, mobile health platforms, neuroinformatics, and speech
communication. A lead architect of the <a href="http://nipy.org/nipype" target="_blank">Nipype</a>
project, a member of <a href="http://repronim.org" target="_blank">ReproNim</a>,
an ardent proponent of distributed Web solutions for data
sharing, querying, and computing, and a strong believer in solving
problems together. </p>
</section>
</div>
</div>
<br/>
<a href="#five" class="goto-next scrolly">Next</a>
</div>
</section>
<!-- Five -->
<section id="five" class="wrapper style2 special fade">
<div class="container">
<header>
<h2>Come join us!</h2>
<p>Help add data, improve data, or develop code</p>
</header>
<div class="row">
<div class="3u 6u(medium) 12u(small)">
<ul class="actions">
<li><a href="http://brainbox.pasteur.fr" class="button special">Contribute to BrainBox</a></li>
</ul>
</div>
<div class="3u 6u$(medium) 12u$(small)">
<ul class="actions">
<li><a href="http://brainbox.pasteur.fr/project/braincatalogue/" class="button special">Fix some brains</a></li>
</ul>
</div>
<div class="3u 6u(medium) 12u(small)">
<ul class="actions">
<li><a href="https://openneu.ro/metasearch" class="button special">+ Data to MetaSearch</a></li>
</ul>
</div>
<div class="3u 6u$(medium) 12u$(small)">
<ul class="actions">
<li><a href="https://github.com/OpenNeuroLab/" target="_blank" class="button special">Improve the code</a></li>
</ul>
</div>
</div>
</div>
</section>
<!-- Footer -->
<footer id="footer">
<ul class="icons">
<li><a href="https://github.com/openNeuroLab" class="icon alt fa-github"><span class="label">GitHub</span></a></li>
</ul>
<ul class="copyright">
<li>© 2016. Open Neuroimaging Laboratory. All rights reserved.</li><li>Design: <a href="http://html5up.net">HTML5 UP</a></li>
</ul>
</footer>
</div>
<!-- Scripts -->
<script src="assets/js/jquery.min.js"></script>
<script src="assets/js/jquery.scrolly.min.js"></script>
<script src="assets/js/jquery.dropotron.min.js"></script>
<script src="assets/js/jquery.scrollex.min.js"></script>
<script src="assets/js/skel.min.js"></script>
<script src="assets/js/util.js"></script>
<!--[if lte IE 8]><script src="assets/js/ie/respond.min.js"></script><![endif]-->
<script src="assets/js/main.js"></script>
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-50078058-2', 'auto');
ga('send', 'pageview');
</script>
</body>
</html>