From 276ca6f595c4bed0a66e4d7f70e011f5fc3a3696 Mon Sep 17 00:00:00 2001 From: Juri Solodenko Date: Mon, 29 Nov 2021 18:23:09 +0100 Subject: [PATCH] Fixes #1983 Cat Integration. Integration tests failing (#1985) Co-authored-by: Yuri05 --- src/Db/Diff/PKSimDB_diff.txt | 41 ++--------------------------------- src/Db/Dump/PKSimDB_dump.txt | 4 ++-- src/Db/PKSimDB.sqlite | Bin 30658560 -> 30658560 bytes 3 files changed, 4 insertions(+), 41 deletions(-) diff --git a/src/Db/Diff/PKSimDB_diff.txt b/src/Db/Diff/PKSimDB_diff.txt index 2d1d426d6..5d576f9b5 100644 --- a/src/Db/Diff/PKSimDB_diff.txt +++ b/src/Db/Diff/PKSimDB_diff.txt @@ -1,39 +1,2 @@ -UPDATE tab_container_parameter_values SET default_value=0.014070596 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=147 AND container_type='ORGAN' AND container_name='ArterialBlood' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.430502115 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=148 AND container_type='ORGAN' AND container_name='Bone' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET value_origin=87 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=149 AND container_type='ORGAN' AND container_name='Brain' AND parameter_name='Specific blood flow rate'; -UPDATE tab_container_parameter_values SET default_value=0.025133766, value_origin=88 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=149 AND container_type='ORGAN' AND container_name='Brain' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.460798028 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=152 AND container_type='ORGAN' AND container_name='Fat' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.009435646 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=155 AND container_type='ORGAN' AND container_name='Gonads' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET value_origin=87 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=156 AND container_type='ORGAN' AND container_name='Heart' AND parameter_name='Specific blood flow rate'; -UPDATE tab_container_parameter_values SET default_value=0.014702634, value_origin=90 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=156 AND container_type='ORGAN' AND container_name='Heart' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET value_origin=87 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=157 AND container_type='ORGAN' AND container_name='Kidney' AND parameter_name='Specific blood flow rate'; -UPDATE tab_container_parameter_values SET default_value=0.034770107, value_origin=91 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=157 AND container_type='ORGAN' AND container_name='Kidney' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET value_origin=87 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=158 AND container_type='ORGAN' AND container_name='LargeIntestine' AND parameter_name='Specific blood flow rate'; -UPDATE tab_container_parameter_values SET default_value=0.016102505, value_origin=89 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=158 AND container_type='ORGAN' AND container_name='LargeIntestine' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET value_origin=87 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=159 AND container_type='ORGAN' AND container_name='Liver' AND parameter_name='Specific blood flow rate'; -UPDATE tab_container_parameter_values SET default_value=0.117226673 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=159 AND container_type='ORGAN' AND container_name='Liver' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.033479071 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=160 AND container_type='ORGAN' AND container_name='Lung' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=1.505466866 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=161 AND container_type='ORGAN' AND container_name='Muscle' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.007386763 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=162 AND container_type='ORGAN' AND container_name='Pancreas' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.033562944 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=165 AND container_type='ORGAN' AND container_name='PortalVein' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.463032629 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=167 AND container_type='ORGAN' AND container_name='Skin' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET value_origin=87 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=168 AND container_type='ORGAN' AND container_name='SmallIntestine' AND parameter_name='Specific blood flow rate'; -UPDATE tab_container_parameter_values SET default_value=0.071925586, value_origin=89 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=168 AND container_type='ORGAN' AND container_name='SmallIntestine' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.008393232 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=169 AND container_type='ORGAN' AND container_name='Spleen' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET value_origin=87 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=170 AND container_type='ORGAN' AND container_name='Stomach' AND parameter_name='Specific blood flow rate'; -UPDATE tab_container_parameter_values SET default_value=0.021648069 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=170 AND container_type='ORGAN' AND container_name='Stomach' AND parameter_name='Volume'; -UPDATE tab_container_parameter_values SET default_value=0.032362769 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=171 AND container_type='ORGAN' AND container_name='VenousBlood' AND parameter_name='Volume'; -INSERT INTO tab_references(reference) VALUES('Bronson RT. Brain weight-body weight scaling in breeds of dogs and cats. Brain Behav Evol. 1979;16(3):227-36. doi: 10.1159/000121839. PMID: 487065.'); -INSERT INTO tab_references(reference) VALUES('Chivers DJ, Hladik CM. Morphology of the gastrointestinal tract in primates: comparisons with other mammals in relation to diet. J Morphol. 1980 Dec;166(3):337-86. doi: 10.1002/jmor.1051660306. PMID: 7441763.'); -INSERT INTO tab_references(reference) VALUES('Johnston BM, Owen DA. Tissue blood flow and distribution of cardiac output in cats: changes caused by intravenous infusions of histamine and histamine receptor agonists. Br J Pharmacol. 1977 Jun;60(2):173-80. doi: 10.1111/j.1476-5381.1977.tb07738.x. PMID: 880428; PMCID: PMC1667415.'); -INSERT INTO tab_references(reference) VALUES('Joseph, DR. 1908. The ratio between the heart‐weight and body weight in various animals. Jour Exper Med.X:521–522.'); -INSERT INTO tab_references(reference) VALUES('Lee JC, Taylor FN, Downing SE. 1975. A comparison of ventricular weights and geometry in newborn, young, and adult mammals. J Appl Physiol 38(1):147–150.'); -INSERT INTO tab_references(reference) VALUES('Slatter, DH. 2003. Textbook of Small Animal Surgery, Volume 1. Philadelphia, PA: Saunders. p. 1562.'); -INSERT INTO tab_references(reference) VALUES('[Joseph, 1908], [Lee, 1975]'); -UPDATE tab_species SET display_name='Cat (IN DEVELOPMENT)' WHERE species='Cat'; -UPDATE tab_species SET display_name='Cattle (IV only) (IN DEVELOPMENT)' WHERE species='Cattle'; -INSERT INTO tab_value_origins(id,description,source,method) VALUES(87,'Johnston BM, Owen DA. Tissue blood flow and distribution of cardiac output in cats: changes caused by intravenous infusions of histamine and histamine receptor agonists. Br J Pharmacol. 1977 Jun;60(2):173-80. doi: 10.1111/j.1476-5381.1977.tb07738.x. PMID: 880428; PMCID: PMC1667415.','Publication','Undefined'); -INSERT INTO tab_value_origins(id,description,source,method) VALUES(88,'Bronson RT. Brain weight-body weight scaling in breeds of dogs and cats. Brain Behav Evol. 1979;16(3):227-36. doi: 10.1159/000121839. PMID: 487065.','Publication','Undefined'); -INSERT INTO tab_value_origins(id,description,source,method) VALUES(89,'Chivers DJ, Hladik CM. Morphology of the gastrointestinal tract in primates: comparisons with other mammals in relation to diet. J Morphol. 1980 Dec;166(3):337-86. doi: 10.1002/jmor.1051660306. PMID: 7441763.','Publication','Undefined'); -INSERT INTO tab_value_origins(id,description,source,method) VALUES(90,'[Joseph, 1908], [Lee, 1975]','Publication','Undefined'); -INSERT INTO tab_value_origins(id,description,source,method) VALUES(91,'Slatter, DH. 2003. Textbook of Small Animal Surgery, Volume 1. Philadelphia, PA: Saunders. p. 1562.','Publication','Undefined'); +UPDATE tab_container_parameter_values SET default_value=0.016102505 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=158 AND container_type='ORGAN' AND container_name='LargeIntestine' AND parameter_name='Volume (default)'; +UPDATE tab_container_parameter_values SET default_value=0.071925586 WHERE parameter_value_version='AnatomyPhysiology_PKSim' AND species='Cat' AND container_id=168 AND container_type='ORGAN' AND container_name='SmallIntestine' AND parameter_name='Volume (default)'; diff --git a/src/Db/Dump/PKSimDB_dump.txt b/src/Db/Dump/PKSimDB_dump.txt index e099cb8fb..5ce976493 100644 --- a/src/Db/Dump/PKSimDB_dump.txt +++ b/src/Db/Dump/PKSimDB_dump.txt @@ -65290,8 +65290,8 @@ INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat',169,'ORGAN','Spleen','Volume',0.00839323200000000047,0.0,1,NULL,1,NULL); INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat',170,'ORGAN','Stomach','Volume',0.021648068999999998951,0.0,1,NULL,1,NULL); INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat',171,'ORGAN','VenousBlood','Volume',0.032362768999999999564,0.0,1,NULL,1,NULL); -INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat',158,'ORGAN','LargeIntestine','Volume (default)',0.016126999999999998974,0.0,0,NULL,1,NULL); -INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat',168,'ORGAN','SmallIntestine','Volume (default)',0.072035000000000001807,0.0,0,NULL,1,NULL); +INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat',158,'ORGAN','LargeIntestine','Volume (default)',0.016102504999999999596,0.0,0,NULL,1,NULL); +INSERT INTO tab_container_parameter_values VALUES('AnatomyPhysiology_PKSim','Cat',168,'ORGAN','SmallIntestine','Volume (default)',0.071925585999999999686,0.0,0,NULL,1,NULL); INSERT INTO tab_container_parameter_values VALUES('Lumen_PKSim','Cattle',4488,'COMPARTMENT','Caecum','Distal radius',0.0,0.0,1,NULL,1,68); INSERT INTO tab_container_parameter_values VALUES('Lumen_PKSim','Cattle',4489,'COMPARTMENT','ColonAscendens','Distal radius',0.0,0.0,1,NULL,1,68); INSERT INTO tab_container_parameter_values VALUES('Lumen_PKSim','Cattle',4491,'COMPARTMENT','ColonDescendens','Distal radius',0.0,0.0,1,NULL,1,68); diff --git a/src/Db/PKSimDB.sqlite b/src/Db/PKSimDB.sqlite index e0aad756354902351df62e13b195c4b24d92115b..460651ff4580957fe97a78f90dfbbd6733d82520 100644 GIT binary patch delta 1690 zcmWmA_rDeb07mi8o6#ba#4VJDD9LOnMM*^|LL{9cL|iJPsBSo@v@~emB4jscNJ7I1 zDSPkiy|?H6;d}moQ#OBdwX&F8yD)P~oeqVWV~~PWknLo9*+F)cic(1`OBJaqJIT&c zO?Hu8WjCoVHDq_GDSJpQ*;DqC5~(e9WN+C=_LaI)Pxh1g(m)zYBiUaX%K>trG?Auq zkTjEnrMVm;hst4cxEvuzN(*Tzt)#UaC2gdw94+mny&NOQN(bpE$4MtSUOGz`=_)74 ziPBBF%SqBhddkUiiu96GaGEd57zATX2=XM&-KZD) zMg3?H4Wm))AC2RHI53(-(>N%a#lg`$4v9nKusA%9h$Ev#w2W5KI*y7q(Ke2bcF{hL ziDRQfbd2MoQyd?iqf2y+6XL|^7Tx2d=n*~RQ!58n?yFm=&{QPRxyY zQ6BSSLEIj9#KO2U?uxr(QQQ;v#(i;rJP;4YL$NrP#L`$6562_1JXXZYSQU@P>Ub>H z#N)9xo`@&osaO~53v1X==sT|RpcS>|&g#-@YyI-laT^Ma%lmCxR46HLKc+>YYQ@PT zn{FxX{PCoc@f!-s#$ui>=9yxiE#|pmHWl-HF)tMJVlkVGd8wE!#cVCCEgAoEVOz)l E0qqK&rvLx| delta 1690 zcmWmA_n#L60Eh9{7nMpOBi&_{l#mo6BrPhGTp`k9WUK5=si$$RtJGy)p+qDtBWdWY zBC+27Tiqb;m0Nvb!{qrm}}LlRc%mw2-}|rR**H z$iC7__LJ7KzqFCIa)2Bt2T40QSPqf)a;O|8hf4=JLORNk(n&f?7wIb9x=Rn~ zDaXjMa-8&%-g3P3krSj$`bs}JQBIPRrN5jar^*01O$JK-oGxd`nR1p4lC$L;Iakh; z^W_4$P%e_eGDL>T#d3*UDwoOSa)n$eSIO0Kja)0&$@OxB+$h6jxZEToWTYsgWVDQt zu~IJMWV}p}i84tlWU@?=sdBSSlj%|^GvpSzRc@2pO|exD(Xf3*gCd}ZKFYK7u&}Uv12rhouW~cL}@gRonx2SHFk^L zqe(Q4J)&9c8O@_b>=i9z@7O2yjaIQ=w2u9wO|*>z;=nj4+Qq?fNVJbbZst zF^-H*(K)(A*XR~U#nI6{dPL7SCXS8cqF3~eO&s8|TIOaY0-d7scQh5<}zSxFjx(%i{95BCd?9;_A32u8r&B z`nVx(jA1c6Zi*2xGK^6%I>yAkUgD%KR1Q(YKPUVG@qRW08vE!)tvYDjr?p+(ieO>+w+RUL=7E7Yx3 zF=ED?vMK*fDj8Q@NS-d{nPQ$T=DA{?FJ^5q>xy}ym=}v#U(8Fzyj;wN!ith{uM{?Q F`5!fWpRND^