Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add interface for Nifti-only datasets #4

Open
raamana opened this issue Oct 3, 2022 · 3 comments
Open

Add interface for Nifti-only datasets #4

raamana opened this issue Oct 3, 2022 · 3 comments

Comments

@raamana
Copy link
Contributor

raamana commented Oct 3, 2022

for non-DICOM datasets (such as those from LONI IDA, HCP etc), key properties of MR volumes present only in NIfTI headers but NOT in JSON sidecars e.g., number of volumes, voxel size, image dimensions, and image obliquity... Hence, this also should be a format we support by default

@sinhaharsh
Copy link
Collaborator

Unless the dataset provides hierarchical information ( e.g. dataset, modality, subject, session) it would be difficult to organize NIfTI-only datasets for protocol compliance. The hierarchical organization is straightforward in BIDS dataset, but it may not be the same for other datasets such as from LONI IDA. For example, ADNI provides an XML file to store hierarchical information.

@sinhaharsh
Copy link
Collaborator

In addition, we need to discuss which of these properties should we expect to be compliant across subjects.

@raamana
Copy link
Contributor Author

raamana commented Jan 31, 2023

they are all coming from similar projects, so there is definitely correspondence, its a matter of us writing the datasets parsers and populating methods :). let's discuss that.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants