diff --git a/_sources/intro.md b/_sources/intro.md index f8cdc73..1283e39 100644 --- a/_sources/intro.md +++ b/_sources/intro.md @@ -1,11 +1,8 @@ -# Welcome to your Jupyter Book +# Welcome to the BioHackathon 2023 - Metabolite subsetting Jupyter Book -This is a small sample book to give you a feel for how book content is -structured. -It shows off a few of the major file types, as well as some sample content. -It does not go in-depth into any particular topic - check out [the Jupyter Book documentation](https://jupyterbook.org) for more information. +This is a book devoted to showcase how to subset metabolite information from biomedical RDF resources - check out [DBCLS BioHackathon 2023](https://2023.biohackathon.org/) for more information. -Check out the content pages bundled with this sample book to see more. +Check out the content pages bundled with this book to see more. ```{tableofcontents} ``` diff --git a/_sources/licenses.md b/_sources/licenses.md new file mode 100644 index 0000000..4f943ff --- /dev/null +++ b/_sources/licenses.md @@ -0,0 +1,5 @@ +# Licenses +Project **Scripts** under this folder and recursive subfolders are licensed under the terms of the [MIT License](LICENSE). + + +Project **Data** under this folder and recursive subfolders are licensed under the terms of the [CC BY License](https://creativecommons.org/licenses/by/4.0/). diff --git a/genindex.html b/genindex.html index 88849c2..40be14e 100644 --- a/genindex.html +++ b/genindex.html @@ -149,12 +149,13 @@ diff --git a/intro.html b/intro.html index d7a03cb..9d1ccb1 100644 --- a/intro.html +++ b/intro.html @@ -9,7 +9,7 @@ - Welcome to your Jupyter Book — BioHackathon 2023 metabolite subsetting book + Welcome to the BioHackathon 2023 - Metabolite subsetting Jupyter Book — BioHackathon 2023 metabolite subsetting book @@ -151,12 +151,13 @@ @@ -338,7 +339,7 @@
-

Welcome to your Jupyter Book

+

Welcome to the BioHackathon 2023 - Metabolite subsetting Jupyter Book

@@ -352,16 +353,14 @@

Welcome to your Jupyter Book

-
-

Welcome to your Jupyter Book#

-

This is a small sample book to give you a feel for how book content is -structured. -It shows off a few of the major file types, as well as some sample content. -It does not go in-depth into any particular topic - check out the Jupyter Book documentation for more information.

-

Check out the content pages bundled with this sample book to see more.

+
+

Welcome to the BioHackathon 2023 - Metabolite subsetting Jupyter Book#

+

This is a book devoted to showcase how to subset metabolite information from biomedical RDF resources - check out DBCLS BioHackathon 2023 for more information.

+

Check out the content pages bundled with this book to see more.

diff --git a/licenses.html b/licenses.html new file mode 100644 index 0000000..08ad0a6 --- /dev/null +++ b/licenses.html @@ -0,0 +1,460 @@ + + + + + + + + + + + + Licenses — BioHackathon 2023 metabolite subsetting book + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+
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+ +
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+
+ + + +
+

Licenses

+ +
+
+ +
+
+
+ + + + +
+ +
+

Licenses#

+

Project Scripts under this folder and recursive subfolders are licensed under the terms of the MIT License.

+

Project Data under this folder and recursive subfolders are licensed under the terms of the CC BY License.

+
+ + + + +
+ + + + + + +
+ + + + +
+
+ +
+ +
+ +

+By The BioHackathon Community +

+ +
+ +
+ +

+ + © Copyright 2022. +
+ +

+ +
+ +
+ +
+ +
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+ +
+
+ + +
+
+
+ + + + + +
+
+ + \ No newline at end of file diff --git a/markdown-notebooks.html b/markdown-notebooks.html index 3c903ed..68c34ef 100644 --- a/markdown-notebooks.html +++ b/markdown-notebooks.html @@ -150,12 +150,13 @@
diff --git a/markdown.html b/markdown.html index 5aa3e28..9effa56 100644 --- a/markdown.html +++ b/markdown.html @@ -150,12 +150,13 @@
diff --git a/metabolite_subsetting.html b/metabolite_subsetting.html index 9cb3a9d..3194129 100644 --- a/metabolite_subsetting.html +++ b/metabolite_subsetting.html @@ -64,7 +64,8 @@ - + + @@ -151,12 +152,13 @@
@@ -438,12 +440,12 @@

Retrieving drug candidates based on activity metabolite similarity (UniProt, 
Requirement already satisfied: SPARQLWrapper in /home/nur/anaconda3/lib/python3.10/site-packages (2.0.0)
 Requirement already satisfied: rdflib>=6.1.1 in /home/nur/anaconda3/lib/python3.10/site-packages (from SPARQLWrapper) (6.3.2)
-Requirement already satisfied: pyparsing<4,>=2.1.0 in /home/nur/anaconda3/lib/python3.10/site-packages (from rdflib>=6.1.1->SPARQLWrapper) (3.0.9)
 Requirement already satisfied: isodate<0.7.0,>=0.6.0 in /home/nur/anaconda3/lib/python3.10/site-packages (from rdflib>=6.1.1->SPARQLWrapper) (0.6.1)
+Requirement already satisfied: pyparsing<4,>=2.1.0 in /home/nur/anaconda3/lib/python3.10/site-packages (from rdflib>=6.1.1->SPARQLWrapper) (3.0.9)
 Requirement already satisfied: six in /home/nur/anaconda3/lib/python3.10/site-packages (from isodate<0.7.0,>=0.6.0->rdflib>=6.1.1->SPARQLWrapper) (1.16.0)
-
/tmp/ipykernel_100073/2559832190.py:8: FutureWarning: Passing a negative integer is deprecated in version 1.0 and will not be supported in future version. Instead, use None to not limit the column width.
+
/tmp/ipykernel_202021/2559832190.py:8: FutureWarning: Passing a negative integer is deprecated in version 1.0 and will not be supported in future version. Instead, use None to not limit the column width.
   pd.set_option('display.max_colwidth', -1)
 

 

@@ -1035,8 +1037,17 @@ 
Other databases
       

         
previous

-        
Welcome to your Jupyter Book

+        
Welcome to the BioHackathon 2023 - Metabolite subsetting Jupyter Book

+      

+    
+    
+      

+        
next

+        
Licenses

       

+
diff --git a/metabolite_subsetting_old.html b/metabolite_subsetting_old.html index 25c8977..d939d79 100644 --- a/metabolite_subsetting_old.html +++ b/metabolite_subsetting_old.html @@ -150,12 +150,13 @@
diff --git a/mychapter.html b/mychapter.html index 91706fd..0a99076 100644 --- a/mychapter.html +++ b/mychapter.html @@ -150,12 +150,13 @@ diff --git a/notebooks.html b/notebooks.html index 129b1df..a5eae30 100644 --- a/notebooks.html +++ b/notebooks.html @@ -150,12 +150,13 @@ @@ -392,7 +393,7 @@

Code blocks and image outputs -
<contextlib.ExitStack at 0x7f11904e32b0>
+
<contextlib.ExitStack at 0x7fa04c9f32b0>
diff --git a/notebooks_original.html b/notebooks_original.html index 2c90d35..6e6fef5 100644 --- a/notebooks_original.html +++ b/notebooks_original.html @@ -152,12 +152,13 @@
@@ -408,7 +409,7 @@

Code blocks and outputs
-
<contextlib.ExitStack at 0x7fb8afccc130>
+
<contextlib.ExitStack at 0x7f507171f1c0>
diff --git a/objects.inv b/objects.inv index a5c4d6f..5a6317a 100644 Binary files a/objects.inv and b/objects.inv differ diff --git a/search.html b/search.html index 996a6e1..c8ec418 100644 --- a/search.html +++ b/search.html @@ -151,12 +151,13 @@
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