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MAC_INSTRUCTIONS.md

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How to get started with eeg-notebooks:

  • Run the following commands in the Terminal:
cd ~
source ~/.bash_profile
conda create -n nbmac python=3
conda activate nbmac
conda install python=3.6
conda install git
git clone https://www.github.com/neurotechX/eeg-notebooks
cd ~/eeg-notebooks
pip install -r requirements_mac.txt
  • fix pygatt code by replacing with patched version with bug commented out on lines 168-170:
cp ~/eeg-notebooks/bgapi.py ~/miniconda3/envs/nbmac/lib/python3.6/site-packages/pygatt/backends/bgapi/
  • For the “conda create” command, you will be asked to type “y” to confirm that yes, you wish to install the required packages
  • The above packages may take ~5-10 minutes to install
  • Ignore the warning that muselsl is not compatible with pygatt version 3.2.0
  • Run the following commands in the Terminal:
mkdir ~/.jupyter/
jupyter notebook password
  • You will then be asked to enter a password. Leave it blank. After pressing , you will be asked to confirm your blank password
  • Run the following commands in the Terminal:
python
import matplotlib
exit()
echo "backend: TkAgg" > ~/.matplotlib/matplotlibrc

Working with eeg-notebooks

  • Turn on your MUSE device
  • Connect the Bluetooth dongle to the USB port of your Mac
  • Run the following commands in the Terminal:
conda activate nbmac
cd ~/eeg-notebooks/notebooks
jupyter notebook
  • Open mac_notebook.ipynb or cueing.ipynb in the browser
  • The rest of the instructions for running experiments and analyzing data are in the mac_notebook.ipynb or cueing.ipynb notebook