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Flujo de Trabajo Simple

Simon Goring, Socorro Dominguez Vidaña

2022-11-09

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-V geometry:vmargin=1in -V geometry:hmargin=1in

Introducción

El objetivo de este documento es mostrar como usar el nuevo paquete de R para la base de datos Neotoma, neotoma2.

El librería neotoma2 está disponible en GitHub y actualmente la documentación sólo está en inglés. Para instalar en R, se debe utilizar el paquete devtools de la siguiente forma:

devtools::install_github('NeotomaDB/neotoma2')
library(neotoma2)

En este tutorial, el usuario aprenderá a:

Buscar sitios a partir de nombres o parámetros geográficos
Filtrar resultados utilizando parametros temporales o espaciales
Obtener información de muestras para los grupos de datos seleccionados.
Desarrollar análisis que incluyan datos climatológicos de la libreria rasters.

Acceder y manipular información en `neotoma2`

En este libro de trabajo utilizaremos diferentes librerias incluyendo leaflet, sf y otras. Para cargar las librerías utilizaremos el paquete pacman, que nos permite instalar automáticamente cualquier librería que no exista en nuestro sistema.

options(warn = -1)
pacman::p_load(neotoma2, dplyr, ggplot2, sf, geojsonsf, leaflet, raster, DT)

Hay que recalcar que R es sensible al orden en que se cargan las librerías. Es por esto que utilizaremos la notación neotoma2:: para comunicarle a R explícitamente que queremos usar la función del paquete neotoma2. Esto es importante porque hay funciones como filter() (filtrar) que existen en otros paquetes también como en el paquete dplyr. Si obtienes un error que se vea así:

Error in UseMethod("filter") : 
  no applicable method for 'filter' applied to an object of class "sites"

Esto quiere decir que estamos tratando de ejecutar la función filter() con el paquete incorrecto.Por eso, agregar dplyr:: o neotoma2:: antes de la función (por ejemplo, neotoma2::filter()) es una buena práctica.

Acceder a la ayuda en Neotoma

Si estás planeando trabajar con Neotoma, únete a nuestro grupo en Slack donde tenemos un canal específicamente para preguntas del paquete de R. También puedes unirte a nuestra lista de correos en nuestro Grupo de Google. Contáctanos en: para ser agregado.

Búsqueda por Sitios

`get_sites()`

Hay diferentes maneras de encontrar sitios en neotoma2. Debémos pensar en los sitios como objetos espaciales. Tienen nombre, ubicación y pueden ser encontrados bajo en contexto de unidades geopolíticas. Sin embargo, bajo el contexto de la API y del paquete de R, los sitios en sí mismos no contienen datos sobre la taxonomía, el grupo de datos o las edades. Simplemente es un contenedor al que le podemos agregar más información. Es así que cuando buscamos por sitio, lo hacemos usando los siguientes atributos (en inglés):

siteid - identificador del sitio
sitename - nombre del sitio
location - ubicación
altitude - altitud (máxima y mínima)
gpid - unidad geopolítica

Nombre del sitio: `sitename="%Lait%"` {.tabset}

Hay ocasiones en las que sabremos exactamente el nombre del sitio que estamos buscando ("Lac Mouton"), y habrà ocasiones en las que tendremos una idea aproximada sobre el nombre (por ejemplo, sabemos que el nombre es parecido a "Lait Lake", o "Lac du Lait", pero no estamos seguros de como fue ingresado a la base de datos).

De forma general, utilizamos el formato: get_sites(sitename="XXXXX") para buscar un sitio por nombre.

PostgreSQL (y la API) utilizan el signo de porcentaje como comodín. De esta forma, "%Lait%" seleccionará "Lac du Lait" y en caso de existir, también seleccionaría "Lake Lait" y "El Viejo Pantano Lait". La búsqueda tampoco distingue entre mayúsculas y minúsculas, por lo que simplemente podría escribir "%lait%".

Código

spo_sites <- neotoma2::get_sites(sitename = "%Lait%")
plotLeaflet(spo_sites)

Resultados

<div id="htmlwidget-bf073f90aa93ffe6be25" style="width:672px;height:480px;" class="leaflet html-widget"></div>
<script type="application/json" data-for="htmlwidget-bf073f90aa93ffe6be25">{"x":{"options":{"crs":{"crsClass":"L.CRS.EPSG3857","code":null,"proj4def":null,"projectedBounds":null,"options":{}}},"calls":[{"method":"addProviderTiles","args":["Stamen.TerrainBackground",null,null,{"errorTileUrl":"","noWrap":false,"detectRetina":false}]},{"method":"addTiles","args":["https://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png",null,null,{"minZoom":0,"maxZoom":18,"tileSize":256,"subdomains":"abc","errorTileUrl":"","tms":false,"noWrap":false,"zoomOffset":0,"zoomReverse":false,"opacity":1,"zIndex":1,"detectRetina":false,"attribution":"&copy; <a href=\"https://openstreetmap.org\">OpenStreetMap<\/a> contributors, <a href=\"https://creativecommons.org/licenses/by-sa/2.0/\">CC-BY-SA<\/a>"}]},{"method":"addCircleMarkers","args":[45.31417,6.81528,10,null,null,{"interactive":true,"draggable":false,"keyboard":true,"title":"","alt":"","zIndexOffset":0,"opacity":1,"riseOnHover":true,"riseOffset":250,"stroke":true,"color":"#03F","weight":5,"opacity.1":0.5,"fill":true,"fillColor":"#03F","fillOpacity":0.2},{"showCoverageOnHover":true,"zoomToBoundsOnClick":true,"spiderfyOnMaxZoom":true,"removeOutsideVisibleBounds":true,"spiderLegPolylineOptions":{"weight":1.5,"color":"#222","opacity":0.5},"freezeAtZoom":false},null,"<b>Lac du Lait<\/b><br><b>Description:<\/b> Lake almost filled. Physiography: depression in mountain. Surrouding vegetation: pasture with rare uncinata.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3220>Explorer Link<\/a>",null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]}],"limits":{"lat":[45.31417,45.31417],"lng":[6.81528,6.81528]}},"evals":[],"jsHooks":[]}</script>

Ubicación: `loc=c()` {.tabset}

El paquete neotoma utilizaba un cuadro delimitador para buscar por ubicación. El cuadro estaba estructurado como un vector con valores de latitud y longitud: c(xmin, ymin, xmax, ymax). En neotoma2 se puede utilizar esta misma caja delimitadora o podemos definir objetos espaciales más complejos con el paquete sf. El paquete sf nos permite trabajar con datos ráster y polígonos en R, para seleccionar sitios existentes en objetos espaciales más complejos. El parametro loc trabaja con vectores simples, objetos WKT, objetos geoJSON y objectos sf en R. Notar que el paquete neotoma2 es un función contenedora API que utiliza un URL (api.neotomadb.org). Los URL están limitados a tener 1028 caracteres por lo que el API no acepta llamadas demasiado largas.

Buscar sitios utilizando una ubicación. En el siguiente código hay tres representaciones de la República Checa: geoJSON, WKT y con un cuadro delimitador. También hemos transformado el elemento cz$geoJSON a un objeto del paquete sf. Podemos utilizar cualquiera de estas cuatro representaciones para trabajar con el paquete neotoma2.

cz <- list(geoJSON = '{"type": "Polygon",
        "coordinates": [[
            [12.40, 50.14],
            [14.10, 48.64],
            [16.95, 48.66],
            [18.91, 49.61],
            [15.24, 50.99],
            [12.40, 50.14]]]}',
        WKT = 'POLYGON ((12.4 50.14, 
                         14.1 48.64, 
                         16.95 48.66, 
                         18.91 49.61,
                         15.24 50.99,
                         12.4 50.14))',
        bbox = c(12.4, 48.64, 18.91, 50.99))

cz$sf <- geojsonsf::geojson_sf(cz$geoJSON)[[1]]

cz_sites <- neotoma2::get_sites(loc = cz$geoJSON, all_data = TRUE)

Puedes siempre hacer un gráfico de los sites obtenidos con plot(), pero los datos perderan el contexto geográfico. La función plotLeaflet() regresa un mapa de la librería leaflet() y permite mayor personalización o agregar datos espaciales adicionales (como nuestro cuadro delimitador, cz$sf, que funciona directamente con el paquete leaflet):

Código

neotoma2::plotLeaflet(cz_sites) %>% 
  leaflet::addPolygons(map = ., 
                       data = cz$sf, 
                       color = "green")

Resultados

<div id="htmlwidget-2cb664e44aec1ebb4bc1" style="width:672px;height:480px;" class="leaflet html-widget"></div>
<script type="application/json" data-for="htmlwidget-2cb664e44aec1ebb4bc1">{"x":{"options":{"crs":{"crsClass":"L.CRS.EPSG3857","code":null,"proj4def":null,"projectedBounds":null,"options":{}}},"calls":[{"method":"addProviderTiles","args":["Stamen.TerrainBackground",null,null,{"errorTileUrl":"","noWrap":false,"detectRetina":false}]},{"method":"addTiles","args":["https://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png",null,null,{"minZoom":0,"maxZoom":18,"tileSize":256,"subdomains":"abc","errorTileUrl":"","tms":false,"noWrap":false,"zoomOffset":0,"zoomReverse":false,"opacity":1,"zIndex":1,"detectRetina":false,"attribution":"&copy; <a href=\"https://openstreetmap.org\">OpenStreetMap<\/a> contributors, <a href=\"https://creativecommons.org/licenses/by-sa/2.0/\">CC-BY-SA<\/a>"}]},{"method":"addCircleMarkers","args":[[49.726332,49.04174,49.76853,48.776394,49.75811,48.985354,48.77444,48.86363,49.232262,48.955424,48.942402,49.143988,50.601566,49.324306,49.69159,49.001672,49.02481,48.988224,49.68134,49.22716,49.250916,48.943358,50.604486,48.981118,48.977644,49.65,49.073406,50.38667,50.37944,50.23694,50.12944,50.58861,50.585,48.912768,48.86687,48.902724,48.922278,50.660758,48.936984,49.4925,50.04739,50.078526,49.52056,50.084794,50.198894,50.25,50.604006,50.59666,50.58407,50.5942,50.61135,50.58548,50.602896,50.5544,50.53615,50.52961,50.5651,50.660422,50.74655,50.736004,50.762596,50.76618,50.21592,50.29944,50.259284,50.198036,50.131382,50.143812,50.06635,50.1125,49.38333,50.09072,49.37639,48.728684,49.06961,48.85583,49.382508,49.233718,49.21306,49.131188,49.027572,49.22278,49.19194,49.14056,49.13722,49.70826,48.84118,48.86351,48.85754,49.639158,49.56648,49.5862,49.61474,49.62626,49.68509,49.65886,49.68227,49.76057,49.75349,49.76956,49.77894,49.80366,49.56648,49.5862,49.61474,49.62626,49.68509,49.65886,49.68227,49.76057,49.75349,49.76956,49.77894,49.80366,49.74904,49.73117,49.65377,49.73012,49.74724,49.71121,49.67219,49.66028,49.62796],[15.970602,15.19097,15.372874,16.4207,15.35538,14.708586,14.927156,14.79583,14.621568,14.804076,14.807094,14.703396,14.609992,15.532934,15.45905,14.777506,14.76891,16.392582,15.47796,15.372418,14.087762,17.068908,16.213004,16.663514,17.199456,15.41667,14.346472,14.13056,14.11556,14.53278,13.92972,16.1175,16.13167,13.813122,13.876662,13.837848,13.821796,15.752374,16.972656,18.55083,17.22029,13.213992,18.63083,17.217524,15.96132,16.45,16.12701,16.10404,16.1524,16.11156,16.20246,16.18415,16.242544,16.30578,16.34791,16.31002,16.27412,15.852968,15.6871,15.70752,15.551962,15.541672,14.831158,14.57833,14.573476,14.66948,13.723426,13.82766,14.23871,14.39167,17.95,14.40639,14.02583,16.90096,17.45758,14.91667,15.412416,15.42525,15.31472,15.241478,15.295758,13.79528,13.80139,13.79028,13.83,18.21357,17.3153,17.32711,17.28043,15.87283,15.97328,15.9429,15.87842,15.83664,15.89515,15.97139,15.98694,16.0602,15.99222,15.934,15.79089,15.81989,15.97328,15.9429,15.87842,15.83664,15.89515,15.97139,15.98694,16.0602,15.99222,15.934,15.79089,15.81989,16.11238,16.13217,16.06899,15.85758,16.03064,16.0744,15.95803,16.0139,16.01675],10,null,null,{"interactive":true,"draggable":false,"keyboard":true,"title":"","alt":"","zIndexOffset":0,"opacity":1,"riseOnHover":true,"riseOffset":250,"stroke":true,"color":"#03F","weight":5,"opacity.1":0.5,"fill":true,"fillColor":"#03F","fillOpacity":0.2},{"showCoverageOnHover":true,"zoomToBoundsOnClick":true,"spiderfyOnMaxZoom":true,"removeOutsideVisibleBounds":true,"spiderLegPolylineOptions":{"weight":1.5,"color":"#222","opacity":0.5},"freezeAtZoom":false},null,["<b>Kameničky<\/b><br><b>Description:<\/b> Drained sloping spring mire. Physiography: Kameničská kotlina Basin at its N margin. Surrounding vegetation: Alder carr.<br><a href=http://apps.neotomadb.org/explorer/?siteids=1399>Explorer Link<\/a>","<b>Bláto<\/b><br><b>Description:<\/b> After deep drainage quite mineral peat. Physiography: broad flat closure of a brook valley. Surrounding vegetation: present: secondary spruce plantations.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3021>Explorer Link<\/a>","<b>Chraňbož<\/b><br><b>Description:<\/b> Small mire. Surrounding vegetation: fagion, Luzulo-Fagion.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3052>Explorer Link<\/a>","<b>Dvůr Anšov<\/b><br><b>Description:<\/b> Fen. Physiography: dyje river alluvium. Surrounding vegetation: carpinion.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3090>Explorer Link<\/a>","<b>Hroznotín<\/b><br><b>Description:<\/b> Small mire. Surrounding vegetation: fagion, Luzulo-Fagion.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3152>Explorer Link<\/a>","<b>Spolí<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=3168>Explorer Link<\/a>","<b>Velanská cesta<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=3169>Explorer Link<\/a>","<b>Červené blato<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=3170>Explorer Link<\/a>","<b>Borkovická blata<\/b><br><b>Description:<\/b> Peat sediment complex undergoing peat excavation.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3171>Explorer Link<\/a>","<b>Branná<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=3172>Explorer Link<\/a>","<b>Barbora<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=3173>Explorer Link<\/a>","<b>Švarcenberk<\/b><br><b>Description:<\/b> Lakes area. Physiography: Basin in plain. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3174>Explorer Link<\/a>","<b>Jestřebské blato<\/b><br><b>Description:<\/b> Vast swamps. Surrounding vegetation: pino-Quercetum.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3175>Explorer Link<\/a>","<b>Loučky<\/b><br><b>Description:<\/b> Sloping spring fen. Physiography: a closure of broad flat brook valley. Surrounding vegetation: pine and spruce plantations.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3254>Explorer Link<\/a>","<b>Malčín<\/b><br><b>Description:<\/b> Broad alluvium of a stream. Surrounding vegetation: quercion robori-petraeae.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3269>Explorer Link<\/a>","<b>Mokré louky (South)<\/b><br><b>Description:<\/b> Cultural meadow. Surrounding vegetation: quercion robori-petraeae.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3289>Explorer Link<\/a>","<b>Mokré louky (North)<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=3290>Explorer Link<\/a>","<b>Olbramovice<\/b><br><b>Description:<\/b> Spring peat bog. Surrounding vegetation: alnenion glutinoso-incanae.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3327>Explorer Link<\/a>","<b>Palašiny<\/b><br><b>Description:<\/b> Broad alluvium of a stream. Surrounding vegetation: quercion robori-petraeae.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3341>Explorer Link<\/a>","<b>Řásná<\/b><br><b>Description:<\/b> Artificial lake with neighbouring fen. Physiography: valley mire. Surrounding vegetation: spruce plantation.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3371>Explorer Link<\/a>","<b>Řežabinec<\/b><br><b>Description:<\/b> Artificial fish pond with marginal fen. Physiography: slightly undulated landscape. Surrounding vegetation: meadows, fields, alder carr.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3377>Explorer Link<\/a>","<b>Svatobořice-Mistřín<\/b><br><b>Description:<\/b> Peat bog. Surrounding vegetation: quercetea robori-petraeae.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3452>Explorer Link<\/a>","<b>Vernéřovice<\/b><br><b>Description:<\/b> Flat valley. Physiography: valley fen, slightly sloping. Surrounding vegetation: cultivated fields, meadow, spruce.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3492>Explorer Link<\/a>","<b>Velké Němčice<\/b><br><b>Description:<\/b> Svratka river bank. Surrounding vegetation: carpinion.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3497>Explorer Link<\/a>","<b>Vracov<\/b><br><b>Description:<\/b> Artificial lake after peat exploitation. Physiography: flat valley. Surrounding vegetation: pine plantations and fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3502>Explorer Link<\/a>","<b>Závidkovice<\/b><br><b>Description:<\/b> Organic sediment in narrow alluvium. Surrounding vegetation: quercion robori-petraeae.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3518>Explorer Link<\/a>","<b>Zbudovská blata<\/b><br><b>Description:<\/b> Burried peat. Physiography: broad floodplain. Surrounding vegetation: meadows, fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=3519>Explorer Link<\/a>","<b>Vrbka<\/b><br><b>Description:<\/b> Peat in edge of Ohre valley. The local egetation of a once-active fen is today heavily tansformed by peat extraction. Physiography: Filled depression of artesian area. Surrounding vegetation: Agricultural area.<br><a href=http://apps.neotomadb.org/explorer/?siteids=13450>Explorer Link<\/a>","<b>Zahájí<\/b><br><b>Description:<\/b> Medium-size spring mire. Physiography: Brook valley. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=13451>Explorer Link<\/a>","<b>Tišice<\/b><br><b>Description:<\/b> Filled-in oxbow lake in the river. Physiography: Floodplain, terrace gravel. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=13452>Explorer Link<\/a>","<b>Rynholec<\/b><br><b>Description:<\/b> Palustrine. Physiography: Plain. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=13468>Explorer Link<\/a>","<b>Anenské údolí<\/b><br><b>Description:<\/b> Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14264>Explorer Link<\/a>","<b>Teplické údolí<\/b><br><b>Description:<\/b> Peat bog. Physiography: Sand stone valley. Surrounding vegetation: Spruce forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14266>Explorer Link<\/a>","<b>Malá niva<\/b><br><b>Description:<\/b> Large ombrotrophic mire. Physiography: Valley of Teplá Vltava River. Surrounding vegetation: Beech forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14272>Explorer Link<\/a>","<b>Mrtvý luh<\/b><br><b>Description:<\/b> Raised bog. Physiography: Glacial mountain lake, Sumava mountains. Surrounding vegetation: Forests and fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14275>Explorer Link<\/a>","<b>Soumarské rašeliniště<\/b><br><b>Description:<\/b> Large ombrotrophic mire. Physiography: Open valley in Sumava Mountains.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14277>Explorer Link<\/a>","<b>Velká niva<\/b><br><b>Description:<\/b> Large ombrotrophic mire. Physiography: Open valley in Sumava Mountains.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14278>Explorer Link<\/a>","<b>Černohorské rašeliniště<\/b><br><b>Description:<\/b> Bog. Physiography: Mountain ombrotrophic peat bog. Surrounding vegetation: Picea forest with Sorbus a.& Vaccinum m.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14282>Explorer Link<\/a>","<b>Čejčské jezero<\/b><br><b>Description:<\/b> Drained lake. Physiography: Valley in southern Moravian basin. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14470>Explorer Link<\/a>","<b>Jančík<\/b><br><b>Description:<\/b> Smal slope-spring mire. Physiography: Beskydy mountain. Surrounding vegetation: Moist spruce forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14476>Explorer Link<\/a>","<b>Velký Máj<\/b><br><b>Description:<\/b> Ombrotrophic bog. Physiography: Saddle in summit ridge of Jeseniky mountains. Surrounding vegetation: Subalpine grasslands.<br><a href=http://apps.neotomadb.org/explorer/?siteids=14503>Explorer Link<\/a>","<b>Vladař<\/b><br><b>Description:<\/b> Reservoir. Physiography: Plateau in valley slightly hilly. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15692>Explorer Link<\/a>","<b>Horní Lomná<\/b><br><b>Description:<\/b> Small spring fen. Physiography: Valley. Surrounding vegetation: Forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15706>Explorer Link<\/a>","<b>Velký Děd<\/b><br><b>Description:<\/b> Ombrotrophic bog. Physiography: Flat plateau of the mountain ridge. Surrounding vegetation: Calamagrosti villosae Piceetum.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15710>Explorer Link<\/a>","<b>Na bahně<\/b><br><b>Description:<\/b> Floodplain mire. Physiography: Terrace. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15712>Explorer Link<\/a>","<b>Kunštátská kaple<\/b><br><b>Description:<\/b> Humus podsols with small peat bogs. Physiography: SW edge ofBohemian Ridge in Orlické hory. Surrounding vegetation: Spruce forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15713>Explorer Link<\/a>","<b>Vlčí rokle<\/b><br><b>Description:<\/b> Peat bog. Physiography: Gorge in a sandstone valley. Surrounding vegetation: Forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15714>Explorer Link<\/a>","<b>Kancelářský příkop<\/b><br><b>Description:<\/b> Small peat bog. Physiography: Rocky depression (Broumovsko). Surrounding vegetation: Forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15717>Explorer Link<\/a>","<b>Kraví hora<\/b><br><b>Description:<\/b> Small peat bog. Physiography: Rocky depression. Surrounding vegetation: Forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15718>Explorer Link<\/a>","<b>Rokliny<\/b><br><b>Description:<\/b> Little bog. Physiography: Little mountain. Surrounding vegetation: Forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15719>Explorer Link<\/a>","<b>Vernéřovice 2<\/b><br><b>Description:<\/b> Flat valley. Physiography: Valley fen, slightly sloping. Surrounding vegetation: Cultivated fields, meadow, spruce.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15720>Explorer Link<\/a>","<b>Teplice nad Metují<\/b><br><b>Description:<\/b> Bottom of former fish pond. Physiography: Valley. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15721>Explorer Link<\/a>","<b>Březová<\/b><br><b>Description:<\/b> Physiography: Valley. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15722>Explorer Link<\/a>","<b>Křinice<\/b><br><b>Description:<\/b> Bog. Physiography: Valley in Broumovsko. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15725>Explorer Link<\/a>","<b>Martínkovice<\/b><br><b>Description:<\/b> Bog. Physiography: Valley. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15726>Explorer Link<\/a>","<b>Broumovské stěny<\/b><br><b>Description:<\/b> Alluvial fen at old oxbow lake. Physiography: Flat alluvium.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15727>Explorer Link<\/a>","<b>Broumovské stěny 2<\/b><br><b>Description:<\/b> Alluvial fen at old oxbow lake. Physiography: Flat alluvium.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15728>Explorer Link<\/a>","<b>Rýchory<\/b><br><b>Description:<\/b> Bog. Surrounding vegetation: Fagus,Sorbus,Acer,Betula. Vegetation formation: Under the forest limit.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15730>Explorer Link<\/a>","<b>Stříbrná bystřina<\/b><br><b>Description:<\/b> Peat bog. Physiography: Palsa-bog. Surrounding vegetation: Meadow. Vegetation formation: Arctic alpine tundra.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15731>Explorer Link<\/a>","<b>Úpské rašeliniště<\/b><br><b>Description:<\/b> Raised bog. Physiography: Plateau of mountain.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15732>Explorer Link<\/a>","<b>Labský důl<\/b><br><b>Description:<\/b> Infilled cirque lake, peat bog. Physiography: Cirque basin. Surrounding vegetation: Open forest. Vegetation formation: Below the alpine timberline.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15745>Explorer Link<\/a>","<b>Pančavská louka<\/b><br><b>Description:<\/b> Mountain raised bog.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15763>Explorer Link<\/a>","<b>Hrabanovská černava<\/b><br><b>Description:<\/b> Mire. Physiography: Plateau. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15764>Explorer Link<\/a>","<b>Mělnický úval - Přívory<\/b><br><b>Description:<\/b> Lacustrine. Physiography: Plateau. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15765>Explorer Link<\/a>","<b>Chrást<\/b><br><b>Description:<\/b> Filled-in oxbow lake. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15770>Explorer Link<\/a>","<b>Stará Boleslav<\/b><br><b>Description:<\/b> Filled-in oxbow lake. Physiography: Flat plain. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15771>Explorer Link<\/a>","<b>Červená louka<\/b><br><b>Description:<\/b> Excavated mire. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15772>Explorer Link<\/a>","<b>Klíčava<\/b><br><b>Description:<\/b> Surrounding vegetation: Forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15773>Explorer Link<\/a>","<b>Břve<\/b><br><b>Description:<\/b> Small spring mire. Physiography: Lowland. Surrounding vegetation: Fields and settlements.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15774>Explorer Link<\/a>","<b>Praha-Podbaba<\/b><br><b>Description:<\/b> Full glacial peat. Physiography: Deeply-cut valley of Vltava river. Surrounding vegetation: Forest, cultivated field & dweling place.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15775>Explorer Link<\/a>","<b>Jablůnka<\/b><br><b>Description:<\/b> Riverine. Physiography: Valley of the Vsetínská Becva river. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15776>Explorer Link<\/a>","<b>Praha-Valdštejnská<\/b><br><b>Description:<\/b> Infilled old river channel. Physiography: Palaeochannel. Surrounding vegetation: Urban.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15777>Explorer Link<\/a>","<b>Kožlí<\/b><br><b>Description:<\/b> Small topogenous spring mire. Surrounding vegetation: Cultural landscape, meadows, fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15778>Explorer Link<\/a>","<b>Pohansko<\/b><br><b>Description:<\/b> Oxbow lakes near old Slvavonic settlement. Physiography: Flat flood plain. Surrounding vegetation: Meadows and floodplain forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15779>Explorer Link<\/a>","<b>Uherské Hradiště<\/b><br><b>Description:<\/b> Archaeological locality. Physiography: River in flat valley. Surrounding vegetation: Urban and cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15781>Explorer Link<\/a>","<b>Halámky<\/b><br><b>Description:<\/b> Swamp. Physiography: Lužnice river, valley. Surrounding vegetation: Forest and cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15782>Explorer Link<\/a>","<b>Hojkov<\/b><br><b>Description:<\/b> Bog. Physiography: Highlands. Surrounding vegetation: Cultivated fields and forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15784>Explorer Link<\/a>","<b>Doupě<\/b><br><b>Description:<\/b> Bog. Physiography: Plain. Surrounding vegetation: Cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15786>Explorer Link<\/a>","<b>Horní Pole<\/b><br><b>Description:<\/b> Bog. Physiography: Open valley in hilly area. Surrounding vegetation: Cultivated fields and forest.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15787>Explorer Link<\/a>","<b>Suchdol<\/b><br><b>Description:<\/b> Bog. Physiography: Plain in Bohemian-Moravian Highlands. Surrounding vegetation: Cultivated fields and forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15788>Explorer Link<\/a>","<b>Stálkov<\/b><br><b>Description:<\/b> Bog. Physiography: Hilly area, Bohemaian-Moravian Highland. Surrounding vegetation: Forests and cultivated fields.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15789>Explorer Link<\/a>","<b>Mladotice<\/b><br><b>Description:<\/b> Bog. Physiography: Plateau/valley. Surrounding vegetation: Cultivated fields and forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15790>Explorer Link<\/a>","<b>Němčice<\/b><br><b>Description:<\/b> Bog. Physiography: Hilly area (Sumava foothills). Surrounding vegetation: Cultivated fields and littles forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15791>Explorer Link<\/a>","<b>Vacovice<\/b><br><b>Description:<\/b> Peat. Physiography: Hilly area (Sumava hoothils). Surrounding vegetation: Cultivated fields and forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15792>Explorer Link<\/a>","<b>Nahořany<\/b><br><b>Description:<\/b> Bog. Physiography: Hilly area (Sumava foothills). Surrounding vegetation: Cultivated fields and forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15793>Explorer Link<\/a>","<b>Brušperk<\/b><br><b>Description:<\/b> Road section through a terrain. Burried peat on glacial river terraces. Physiography: Valley in the Ostrava basin. Surrounding vegetation: Cultivated fields and little forests.<br><a href=http://apps.neotomadb.org/explorer/?siteids=15795>Explorer Link<\/a>","<b>Bílé Karpaty 34<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=25991>Explorer Link<\/a>","<b>Bílé Karpaty 35<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=25992>Explorer Link<\/a>","<b>Bílé Karpaty 36<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=25993>Explorer Link<\/a>","<b>Dářko<\/b><br><b>Description:<\/b> Part of a larger wetland complex. The part investigated is called Padrtiny. The peat is up to 8.6 m deep.<br><a href=http://apps.neotomadb.org/explorer/?siteids=27171>Explorer Link<\/a>","<b>Plíčky<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29125>Explorer Link<\/a>","<b>Louky u Černého lesa<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29126>Explorer Link<\/a>","<b>Račín<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29127>Explorer Link<\/a>","<b>Vepřová-Žlábek<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29128>Explorer Link<\/a>","<b>Suché Kopce<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29129>Explorer Link<\/a>","<b>Pihoviny<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29130>Explorer Link<\/a>","<b>Kocanda<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29131>Explorer Link<\/a>","<b>Porostliny<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29132>Explorer Link<\/a>","<b>Bahna<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29133>Explorer Link<\/a>","<b>Ratajské rybníky<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29134>Explorer Link<\/a>","<b>Zubří<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29135>Explorer Link<\/a>","<b>Nový Rybník<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29136>Explorer Link<\/a>","<b>Plíčky<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29137>Explorer Link<\/a>","<b>Louky u Černého lesa<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29138>Explorer Link<\/a>","<b>Račín<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29139>Explorer Link<\/a>","<b>Vepřová-Žlábek<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29140>Explorer Link<\/a>","<b>Suché Kopce<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29141>Explorer Link<\/a>","<b>Pihoviny<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29142>Explorer Link<\/a>","<b>Kocanda<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29143>Explorer Link<\/a>","<b>Porostliny<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29144>Explorer Link<\/a>","<b>Bahna<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29145>Explorer Link<\/a>","<b>Ratajské rybníky<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29146>Explorer Link<\/a>","<b>Zubří<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29147>Explorer Link<\/a>","<b>Nový Rybník<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29148>Explorer Link<\/a>","<b>Stropnická cesta<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29149>Explorer Link<\/a>","<b>Žižkov<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29150>Explorer Link<\/a>","<b>Samotín<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29151>Explorer Link<\/a>","<b>Chlum<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29152>Explorer Link<\/a>","<b>Míšek<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29153>Explorer Link<\/a>","<b>Knížecí studánka<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29154>Explorer Link<\/a>","<b>Pod Šindelným vrchem<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29155>Explorer Link<\/a>","<b>Rampoltův mlýn<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29156>Explorer Link<\/a>","<b>Brožova skála<\/b><br><b>Description:<\/b> NA<br><a href=http://apps.neotomadb.org/explorer/?siteids=29157>Explorer Link<\/a>"],null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]},{"method":"addPolygons","args":[[[[{"lng":[12.4,14.1,16.95,18.91,15.24,12.4],"lat":[50.14,48.64,48.66,49.61,50.99,50.14]}]]],null,null,{"interactive":true,"className":"","stroke":true,"color":"green","weight":5,"opacity":0.5,"fill":true,"fillColor":"green","fillOpacity":0.2,"smoothFactor":1,"noClip":false},null,null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]}],"limits":{"lat":[48.64,50.99],"lng":[12.4,18.91]}},"evals":[],"jsHooks":[]}</script>

Auxiliares para objetos de tipo Sitios {.tabset}

Si observamos al diagrama UML para los objetos de neotoma2 podemos ver que hay un conjunto de funciones qeu operan a nivel de sites (sitios). Conforme vamos agregando información a los objetos sites mediante las funciones get_datasets() o get_downloads(), podemos utilizar un mayor número de funciones auxiliares. Podemos así, tomar ventaja de funciones como summary() para tener un mejor entendimiento de los diferentes tipos de datos que tenemos en este conjunto de sitios. El código a continuación regresa la tabla de resumen. Hacemos después un poco de magia con R para cambiar el formato en que los datos están siendo representados (convirtiéndolo a un objeto datatable()), pero la pieza principal es la llamada a la función summary().

Código

neotoma2::summary(cz_sites)

Resultados

<div id="htmlwidget-e13974eb3ef8496e0ca8" style="width:100%;height:auto;" class="datatables html-widget"></div>
<script type="application/json" 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<th>datasets<\/th>\n      <th>types<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"scrollX":"100%","dom":"t","columnDefs":[{"className":"dt-right","targets":[0,3,4]}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>

Podemos ver que no hay cronologías asociadas con el objeto sites. Esto es porque, por el moemnto, no hemos extraído la información necesaria de los dataset. Todo lo que sabemos, tras la llamada get_sites() son los tipos de conjuntos de datos con los que contamos.

Búsqueda de conjuntos de datos (dataset): {.tabset}

Sabemos que las unidades de colecta y los conjuntos de datos están contenidos en los sitios. Similarmente, un objeto de tipo sites contienen collectionunits que contienen datasets. En la tabla anterior podemos ver que algunos de los sitios contienen registros de polen. Dicho esto, solo tenemos la información de sites, pero por conveniencia, la API devuelve información adicional sobre los conjuntos de datos lo que nos permite navegar de manera más fácil los registros.

Con un objeto sites podemos llamar directamente a la función get_datasets(), que nos permitirá extraer metadatos sobre los conjuntos de datos. Podemos utilizar la función datasets() en cualqueir momento para obtener más información de los conjuntos de datos que un objeto sites pueda contener. Comparemos la información impresa datasets(cz_sites) contra una llamada similar utilizando el siguiente código.

Código

cz_datasets <- neotoma2::get_datasets(cz_sites, all_data = TRUE)

datasets(cz_datasets)

Resultados

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After vacuum filtration, element content was measured by AAS spectrometer: Ca (emission), Mg (absorption).","Data contributed by PALYCZ via Kunes Petr.",null,"Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by Rybnícková Eliska.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by Rybnícková Eliska.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by Publication.","Data contributed by Publication.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by Pokorn∞, P.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Vegetation relevés are stored in the Czech National Phytosociological Database (https://www.sci.muni.cz/botany/vegsci/dbase.php?lang=en)","The same samples as for datasets 44899-44937, but here with higher pollen sum.","Vegetation relevés are stored in the Czech National Phytosociological Database (https://www.sci.muni.cz/botany/vegsci/dbase.php?lang=en)","The same samples as for datasets 44899-44937, but here with higher pollen sum.","Vegetation relevés are stored in the Czech National Phytosociological Database (https://www.sci.muni.cz/botany/vegsci/dbase.php?lang=en)","The same samples as for datasets 44899-44937, but here with higher pollen sum.",null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,"Data contributed by Rybníčková Eliška.","Data contributed by Rybnícková Eliska.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by Jankovská Vlasta.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by Svobodová Helena.","Data contributed by Jankovská Vlasta.","Data contributed by Svobodová Helena.",null,"Data contributed by Rybnícková Eliska.","Data contributed by Rybníčková Eliška.","Data contributed by Rybníčková Eliška.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.",null,"Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr."]],"container":"<table class=\"display\">\n  <thead>\n    <tr>\n      <th> <\/th>\n      <th>datasetid<\/th>\n      <th>database<\/th>\n      <th>datasettype<\/th>\n      <th>age_range_old<\/th>\n      <th>age_range_young<\/th>\n      <th>notes<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"scrollX":"100%","dom":"t","columnDefs":[{"className":"dt-right","targets":[1,4,5]},{"orderable":false,"targets":0}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>

Filtrar Registros {.tabset}

Si decidimos únicamente obtener registros de un sólo tipo de datos, o si requerimos de mayor filtración, debemos considerar filtrar antes de descargar todos los datos y muestras. Para ello, utilizaremos la función filter(). Por ejemplo, si requerimos únicamente los registros de polen con sus cronologías conocidas, podemos filtrar de la siguiente forma:

Código

cz_pollen <- cz_datasets %>% 
  neotoma2::filter(datasettype == "pollen" & !is.na(age_range_young))

neotoma2::summary(cz_pollen)

Resultados

<div id="htmlwidget-df98be504474f3ff739e" style="width:100%;height:auto;" class="datatables html-widget"></div>
<script type="application/json" data-for="htmlwidget-df98be504474f3ff739e">{"x":{"filter":"none","vertical":false,"data":[["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","32","33","34","35","36","37","38","39","40","41","42","43","44","45","46","47","48","49","50","51","52","53","54","55"],[1399,3090,3172,3173,3254,3289,3327,3371,3377,3452,3492,13450,13451,13452,13468,14264,14266,14272,14275,14277,14470,14503,15692,15706,15710,15712,15714,15745,15763,15764,15765,15770,15774,15778,27171,3021,3170,3171,3171,3174,3174,3341,3502,3502,3519,3519,14282,14282,15732,15732,15732,15732,15732,15732,15771],["Kameničky","Dvůr Anšov","Branná","Barbora","Loučky","Mokré louky (South)","Olbramovice","Řásná","Řežabinec","Svatobořice-Mistřín","Vernéřovice","Vrbka","Zahájí","Tišice","Rynholec","Anenské údolí","Teplické údolí","Malá niva","Mrtvý luh","Soumarské rašeliniště","Čejčské jezero","Velký Máj","Vladař","Horní Lomná","Velký Děd","Na bahně","Vlčí rokle","Labský důl","Pančavská louka","Hrabanovská černava","Mělnický úval - Přívory","Chrást","Břve","Kožlí","Dářko","Bláto","Červené blato","Borkovická blata","Borkovická blata","Švarcenberk","Švarcenberk","Palašiny","Vracov","Vracov","Zbudovská blata","Zbudovská blata","Černohorské rašeliniště","Černohorské rašeliniště","Úpské rašeliniště","Úpské rašeliniště","Úpské rašeliniště","Úpské rašeliniště","Úpské rašeliniště","Úpské rašeliniště","Stará Boleslav"],["KAMEN","DVURANSO","JC-6-A","JC-6-B","LOUCKY","MLOUKY","OLBRAM","RASNA","REZABIN","SVATOBOR","VERNER","VRBKA","ZAHAJI","TISICE","RYNHOLEC","UDOLI","TEPLUDOL","SA21A","SA16C","SA8A","CEJCKE27","MAJ","VLADAR","MB5A","DED","NABAHNE","VLCIROKL","LABSKYDU","PANCALOU","HRABANOS","MELNICKY","CHRAST","BRVE","KOZLI","DARKO","BLATO1","JC-3-A","JC-5-D","JC-5-A","SVARCENB","SVARCEN3","PALASINY","VRACOV","VRACOV1","ZBUDOV1","ZBUDOV2","KR1A","CRH","KR2A","KR2B","KR2C","KR5A","UPSKELBU","KR5C","STARABCI"],[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1],["pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen"]],"container":"<table class=\"display\">\n  <thead>\n    <tr>\n      <th> <\/th>\n      <th>siteid<\/th>\n      <th>sitename<\/th>\n      <th>collectionunit<\/th>\n      <th>chronolgies<\/th>\n      <th>datasets<\/th>\n      <th>types<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"scrollX":"100%","dom":"t","columnDefs":[{"className":"dt-right","targets":[1,4,5]},{"orderable":false,"targets":0}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>

Podemos ver qeu la tabla de datos se ve diferente y que hay un número menor de sitios.

Obteniendo las muestras con `sample()`.

Debido a que los datos de las muestras agregan mucha sobrecarga (para la República Checa, los datos de polen, el objeto que incluye toda la información de muestras es 20 veces mayor que el dataset), por eso llamamos la función get_downloads() después de haber hecho un filtrado preliminar. Después de get_datasets(), tenemos información sufciente para filtar basados en ubicación, límites de tiempo y tipo conjunto de datos. Cuando ejecutamosget_downloads() podemos hacer un filtrado más fino a nivel de unidad de análisis o nivel de taxón.

El siguiente comando puede tomar algo de tiepo. Por eso, hemos guardado el resultado en un archivo RDS. Puedes intentar correr este comando por tu cuenta o puedes cargar el archivo RDS.

## This line is commented out because we've already run it for you.
## cz_dl <- cz_pollen %>% get_downloads(all_data = TRUE)
cz_dl <- readRDS('data/czDownload.RDS')

Una vez que hemos hecho la descarga, ahora tenemos información de cada sitio asociado a las unidades de colecta, los tipos de conjunto de datos, y a todas las muestras asociadas a estos conjuntos. Para extraer toda las muestras, utilizamos la función samples:

allSamp <- samples(cz_dl)

Una vez hecho esto, obtenemos un data.frame esto es una tabla con 130889 renglones y 37 columnas. La razón de que esta tabla sea muy larga es porque estamos obteniendo los datos en un formato largo. Cada rengón contiene toda la información que se necesita para interpretarse correctamente:

##  [1] "age"             "agetype"         "ageolder"        "ageyounger"     
##  [5] "chronologyid"    "chronologyname"  "units"           "value"          
##  [9] "context"         "element"         "taxonid"         "symmetry"       
## [13] "taxongroup"      "elementtype"     "variablename"    "ecologicalgroup"
## [17] "analysisunitid"  "sampleanalyst"   "sampleid"        "depth"          
## [21] "thickness"       "samplename"      "datasetid"       "siteid"         
## [25] "sitename"        "lat"             "long"            "area"           
## [29] "sitenotes"       "description"     "elev"            "collunitid"     
## [33] "database"        "datasettype"     "age_range_old"   "age_range_young"
## [37] "datasetnotes"

Para algunos tipos de conjunto de datos o análisis específicos, algunas columnas podrán no ser necesarias. Sin embargo, para otros conjuntos de datos pueden ser críticamente importantes. Para permitir que el paquete neotoma2 sea lo más útil posible para todos los usuarios, hemos incluido todas las columnas posibles.

Extracción de taxones {.tabset}

Si quieres saber que taxones existen en los registros, puedes utilizar la función taxa() en el objeto sites. La función taxa() regresa los taxones únicos junto con dos columnas adicionales sites y samples que indican en cuantos sitios y en cuantas muestras el taxón aparece, esto nos ayuda a comprender mejor que tan común es cada taxón individual.

Código

neotomatx <- neotoma2::taxa(cz_dl)

Resultados

<div id="htmlwidget-7cb63f04812bcee93ed7" style="width:100%;height:auto;" class="datatables html-widget"></div>
<script type="application/json" data-for="htmlwidget-7cb63f04812bcee93ed7">{"x":{"filter":"none","vertical":false,"data":[["grains/tablet","grains/tablet","ml","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP","NISP"],[null,null,null,"anachronic","anachronic","anachronic",null,null,null,null,null,null,null,null,null,null,null,null,null,null],["concentration","concentration","volume","pollen/spore","spore","spore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore"],[930,932,276,2644,544,2644,1489,2193,3698,5128,5129,5407,5413,5414,5415,5584,9988,10006,27614,29431],[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],["Laboratory analyses","Laboratory analyses","Laboratory analyses","Unidentified palynomorphs","Unidentified palynomorphs","Unidentified palynomorphs","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi","Fungi"],["concentration","concentration","volume","pollen/spore","spore","spore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore","ascospore"],["Lycopodium tablets","Lycopodium spike","Sample quantity","Unknown (Tertiary)","Unknown (Cretaceous)","Unknown (Tertiary)","Sporormiella","Gelasinospora","Microthyrium","Gelasinospora undiff.","Gelasinospora reticulispora","Helicoma","Anthostomella fuegiana","Gaeumannomyces cf. G. caricis","Diporotheca","Helicoön pluriseptatum","Gaeumannomyces","Ascomycota","Ustulina deusta","Geoglossum sphagnophilum"],["LABO","LABO","LABO","ANAC","ANAC","ANAC","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG","FUNG"],[3,1,6,4,1,2,1,6,30,1,1,3,1,6,6,5,4,4,4,1],[130,80,368,137,6,16,27,19,223,1,5,17,1,131,50,155,55,53,83,1]],"container":"<table class=\"c(&quot;grains/tablet&quot;, &quot;grains/tablet&quot;, &quot;ml&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &#10;&quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &#10;&quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, &quot;NISP&quot;, 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NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, 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3815, 3832, 3833, 3837, 3846, 3849, 3852, 3853, 3855, 3857, 3881, 3897, 3901, 3917, 3923, 3926, 3950, 3952, 3967, 3969, 3970, 3974, 3982, 3988, 3996, 4001, 4003, 4005, 4034, 4047, 4053, 4054, 4059, 4071, 4076, 4079, 4085, 4092, 4093, 4094, 4098, 4102, 4117, 4122, 4123, 4125, 4130, 4133, 4136, 4153, 4157, 4162, 4172, 4175, 4178, 4200, 4221, 4222, &#10;4223, 4226, 4238, 4260, 4266, 4270, 4273, 4274, 4279, 4282, 4286, 4287, 4316, 4330, 4336, 4341, 4358, 4359, 4361, 4366, 4367, 4373, 4374, 4377, 4378, 4389, 4392, 4395, 4409, 4410, 4411, 4412, 4414, 4416, 4421, 4422, 4430, 4431, 4448, 4449, 4451, 4455, 4457, 4459, 4462, 4464, 4469, 4474, 4477, 4488, 4489, 4490, 4492, 4494, 4497, 4502, 4505, 4506, 4520, 4521, 4530, 4536, 4546, 4548, 4550, 4553, 4554, 4570, 4573, 4578, 4580, 4585, 4588, 4591, 4599, 4600, 4602, 4608, 4611, 4615, 4620, 4626, 4633, 4635, &#10;4639, 4642, 4647, 4663, 4664, 4666, 4704, 4708, 4712, 4716, 4729, 4736, 4747, 4748, 4758, 4759, 4770, 4782, 4783, 4784, 4786, 4789, 4790, 4796, 4803, 4805, 4809, 4814, 4818, 4827, 4836, 4845, 4853, 4854, 4856, 4860, 4862, 4863, 4865, 4870, 4877, 4884, 4891, 4906, 4907, 4922, 4923, 4925, 4933, 4955, 4956, 4959, 4961, 4964, 4968, 4973, 4975, 4976, 5066, 5073, 5090, 5092, 5094, 5146, 5150, 5151, 5152, 5191, 5192, 5223, 5224, 5225, 5232, 5233, 5234, 5257, 5299, 5300, 5310, 5315, 5316, 5342, 5353, 5357, &#10;5360, 5375, 5410, 5465, 5496, 5614, 5621, 5633, 5639, 5642, 5674, 5750, 5804, 5812, 5823, 9125, 9505, 9515, 9517, 9530, 9690, 9722, 9773, 9774, 14859, 14919, 15536, 21606, 21608, 22545, 23835, 24669, 25843, 25878, 25879, 27457, 27573, 27585, 27587, 27588, 27589, 27595, 27596, 27605, 27606, 27625, 27639, 27650, 27661, 27662, 27718, 27719, 27948, 27949, 27951, 27966, 29439, 29810, 30385, 30933, 30937, 30938, 30939, 30941, 30978, 31001, 31031, 31050, 31234, 31235, 31264, 31266, 31300, 31405, 31465, &#10;31468, 31492, 31494, 31500, 31509, 31515, 31534, 31622, 31744, 31875, 31999, 32003, 32275, 32277, 32447, 32529, 32543, 32591, 32595, 32600, 32610, 32687, 32738, 32772, 32834, 32850, 32872, 32917, 32924, 32965, 33022, 33042, 33057, 33069, 33079, 33098, 33166, 33237, 33239, 33295, 33318, 33320, 33322, 33346, 33362, 33479, 33481, 33541, 33545, 33583, 33633, 33641, 33679, 33799, 33823, 33824, 33850, 33859, 33877, 33892, 33934, 33948, 33957, 33958, 33959, 33960, 33961, 33980, 34005, 34035, 34036, 34037, &#10;34042, 34073, 34082, 34103, 34162, 34163, 34171, 34185, 34220, 34247, 34674, 38081, 39196, 41052, 41697, 41698, 41699, 41700, 41790, 312, 313, 905, 3713, 38571, 2186, 5133, 26, 33, 83, 91, 115, 139, 166, 167, 168, 170, 172, 175, 184, 234, 286, 294, 305, 313, 339, 348, 508, 535, 573, 604, 613, 648, 649, 650, 677, 720, 750, 807, 834, 835, 1109, 1125, 1164, 1167, 1168, 1180, 1331, 1343, 1344, 1345, 1348, 1370, 1489, 1490, 1615, 1801, 1807, 1890, 2194, 2223, 2301, 2343, 2613, 2621, 2675, 3429, 3698, &#10;5004, 5011, 5013, 5021, 5030, 5035, 5173, 5174, 5393, 5415, 5470, 5546, 5547, 5559, 5584, 5778, 9571, 9775, 15671, 23125, 25917, 25930, 27614, 29001, 29431, 30734, 30735, 30936, 31093, 31373, 31714, 32560, 32597, 32745, 32932, 33986, 34305, 34311, 34317, 34318, 34319, 34320, 34321, 34322, 34323, 34324, 34385, 34413, 34567, 34623, 34627, 34628, 34631, 34634, 34771, 34842, 34868, 34871, 34881, 34917, 37337, 37341, 37343, 37357, 37359, 37394, 37551, 38263, 38524, 38542, 38559, 38563, 38575, 38580, 38584, &#10;38620, 38621, 38626, 41780, 41792, 41793, 9995, 210, 385, 559, 561, 570, 571, 572, 608, 619, 626, 1189, 1191, 1194, 1195, 1223, 2187, 2190, 5389, 5405, 5567, 28043, 30985, 31199, 31200, 31208, 32184, 33663, 673, 18282, 5397, 27180, 1488, 1704, 30518, 41702, 1062, 1062, 1062, 1062, 930, 932, 1062, 930, 932, 1062) c(NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, &#10;NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) c(&quot;Laboratory analyses&quot;, &quot;Laboratory analyses&quot;, &quot;Laboratory analyses&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Algae&quot;, &#10;&quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Arthropods undiff.&quot;, &quot;Flatworms&quot;, &quot;Flatworms&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Dinoflagellates&quot;, &quot;Dinoflagellates&quot;, &quot;Animals undiff.&quot;, &#10;&quot;Animals undiff.&quot;, &quot;Arthropods undiff.&quot;, &quot;Algae&quot;, &quot;Charcoal&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Insects&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Animals undiff.&quot;, &quot;Arthropods undiff.&quot;, &quot;Insects&quot;, &quot;Vascular plants&quot;, &quot;Rotifers&quot;, &quot;Rotifers&quot;, &quot;Rotifers&quot;, &quot;Rotifers&quot;, &quot;Rotifers&quot;, &quot;Crustaceans undiff.&quot;, &quot;Testate amoebae&quot;, &quot;Flatworms&quot;, &quot;Flatworms&quot;, &quot;Animals undiff.&quot;, &quot;Animals undiff.&quot;, &quot;Rotifers&quot;, &quot;Bryophytes&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &#10;&quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Flatworms&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Nematodes&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Nematodes&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Algae&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Algae&quot;, &quot;Animals undiff.&quot;, &quot;Nematodes&quot;, &quot;Animals undiff.&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Fungi&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Flatworms&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &#10;&quot;Algae&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Flatworms&quot;, &quot;Dinoflagellates&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &#10;&quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &#10;&quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &#10;&quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &#10;&quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular 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palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Crustaceans undiff.&quot;, &quot;Crustaceans undiff.&quot;, &quot;Sponges&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Bryophytes&quot;, &quot;Unidentified palynomorphs&quot;, &#10;&quot;Unidentified palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Bryophytes&quot;, &quot;Bryophytes&quot;, &quot;Bryophytes&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Bryophytes&quot;, &quot;Bryophytes&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &#10;&quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Bryophytes&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Bryophytes&quot;, &quot;Bryophytes&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &#10;&quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Bryophytes&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Fungi&quot;, &quot;Bryophytes&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Bryophytes&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &#10;&quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Algae&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Unidentified palynomorphs&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Fungi&quot;, &quot;Vascular plants&quot;, &quot;Vascular plants&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &#10;&quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Testate amoebae&quot;, &quot;Vascular plants&quot;, &quot;Insects&quot;, &quot;Diatoms&quot;, &quot;Diatoms&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Algae&quot;, &quot;Charcoal&quot;, &quot;Charcoal&quot;, &quot;Charcoal&quot;, &quot;Charcoal&quot;, &quot;Laboratory analyses&quot;, &quot;Laboratory analyses&quot;, &quot;Charcoal&quot;, &quot;Laboratory analyses&quot;, &quot;Laboratory analyses&quot;, &quot;Charcoal&quot;) c(&quot;concentration&quot;, &quot;concentration&quot;, &quot;volume&quot;, &quot;pollen/spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &#10;&quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;ascospore&quot;, &quot;cell&quot;, &quot;cell&quot;, &quot;cell&quot;, &quot;cell&quot;, &quot;cell&quot;, &quot;cell&quot;, &quot;cell cluster&quot;, &quot;cell cluster&quot;, &quot;cell cluster&quot;, &quot;chlamydospore&quot;, &quot;claw&quot;, &quot;coccon&quot;, &quot;coccon&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &quot;colony&quot;, &#10;&quot;colony&quot;, &quot;conidiophore&quot;, &quot;conidium&quot;, &quot;conidium&quot;, &quot;conidium&quot;, &quot;cyst&quot;, &quot;cyst&quot;, &quot;egg&quot;, &quot;egg&quot;, &quot;egg&quot;, &quot;filament/cell&quot;, &quot;fragment&quot;, &quot;fruit body&quot;, &quot;fruit body&quot;, &quot;fruit body/ascospore&quot;, &quot;fruit body/ascospore&quot;, &quot;fruit body/ascospore&quot;, &quot;head capsule&quot;, &quot;hyphae&quot;, &quot;hyphae&quot;, &quot;invertebrate undiff.&quot;, &quot;invertebrate undiff.&quot;, &quot;labium&quot;, &quot;leaf spine&quot;, &quot;lorica&quot;, &quot;lorica&quot;, &quot;lorica&quot;, &quot;lorica&quot;, &quot;lorica&quot;, &quot;mandible/claw&quot;, &quot;non-pollen palynomorph&quot;, &quot;oocyte&quot;, &quot;oocyte&quot;, &quot;ovum&quot;, &quot;ovum&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &#10;&quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &#10;&quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;palynomorph&quot;, &quot;peridinoid cyst&quot;, &quot;pollen&quot;, &quot;pollen&quot;, 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&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, 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&#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &#10;&quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen&quot;, &quot;pollen/spore&quot;, &quot;pollen/spore&quot;, &quot;pollen/spore&quot;, &quot;pollen/spore&quot;, &quot;postabdomen, male&quot;, &quot;spermatophore&quot;, &quot;spicule&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &#10;&quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &#10;&quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &#10;&quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;spore&quot;, &quot;sporocarp&quot;, &quot;stomate&quot;, &quot;stomate&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;test&quot;, &quot;trichoblast&quot;, &quot;unspecified&quot;, &quot;valve&quot;, &quot;valve&quot;, &quot;zygospore&quot;, &quot;zygospore&quot;, &quot;zygospore&quot;, &quot;zygospore/aplanospore&quot;, &quot;&lt;20 µm&quot;, &quot;&gt;100 µm&quot;, &quot;&gt;50 µm&quot;, &quot;20-50 µm&quot;, &quot;batch number&quot;, &quot;counted&quot;, &quot;fragment&quot;, &quot;quantity added&quot;, &quot;quantity added&quot;, &#10;&quot;fragment&quot;) c(&quot;Lycopodium tablets&quot;, &quot;Lycopodium spike&quot;, &quot;Sample quantity&quot;, &quot;Unknown (Tertiary)&quot;, &quot;Unknown (Cretaceous)&quot;, &quot;Unknown (Tertiary)&quot;, &quot;Sporormiella&quot;, &quot;Gelasinospora&quot;, &quot;Microthyrium&quot;, &quot;Gelasinospora undiff.&quot;, &quot;Gelasinospora reticulispora&quot;, &quot;Helicoma&quot;, &quot;Anthostomella fuegiana&quot;, &quot;Gaeumannomyces cf. G. caricis&quot;, &quot;Diporotheca&quot;, &quot;Helicoön pluriseptatum&quot;, &quot;Gaeumannomyces&quot;, &quot;Ascomycota&quot;, &quot;Ustulina deusta&quot;, &quot;Geoglossum sphagnophilum&quot;, &quot;Ascospora&quot;, &quot;Lasiosphaeria-type&quot;, &quot;Coniochaeta xylariispora&quot;, &quot;Gelasinospora (type 1, HdV)&quot;, &#10;&quot;Actinopeltis undiff.&quot;, &quot;Geoglossum sphagnophilum/Trichoglossum hirsutum (type 77A/77B, HdV)&quot;, &quot;Chaetomium undiff.&quot;, &quot;Coniochaeta cf. C. ligniaria&quot;, &quot;Gaeumannomyces undiff.&quot;, &quot;Lasiosphaeria cf. L. caudata&quot;, &quot;Lasiosphaeria sp.&quot;, &quot;Microthyrium microscopicum&quot;, &quot;Microthyrium undiff.&quot;, &quot;Pleospora undiff.&quot;, &quot;Fungi (type 19, HdV)&quot;, &quot;Fungi (type 47, HdV)&quot;, &quot;cf. Trichoglossum hirsutum (type 77B, HdV)&quot;, &quot;Cercophora sp. (type 112, HdV)&quot;, &quot;Podospora-type (type 368, HdV)&quot;, &quot;Chaetomium sp. (type 7A, HdV)&quot;, &quot;Tetraploa scheueri&quot;, &#10;&quot;Caryospora sp. (type 1001, HdV)&quot;, &quot;Gelasinospora (type 1A, HdV)&quot;, &quot;Gelasinospora (type 1B, HdV)&quot;, &quot;Staurastrum&quot;, &quot;Arthrodesmus&quot;, &quot;Penium&quot;, &quot;Closterium&quot;, &quot;Closterium undiff.&quot;, &quot;Desmidiales&quot;, &quot;Fungi (type 200, HdV)&quot;, &quot;Fungi (type 24, HdV)&quot;, &quot;Asterosporium&quot;, &quot;Fungi (type 11, HdV)&quot;, &quot;Araneae&quot;, &quot;Platyhelminthes (type 353B, HdV)&quot;, &quot;Platyhelminthes (type 353A, HdV)&quot;, &quot;Pediastrum&quot;, &quot;Botryococcus&quot;, &quot;Pediastrum angulosum&quot;, &quot;Pediastrum braunii&quot;, &quot;Pediastrum duplex&quot;, &quot;Pediastrum undiff.&quot;, &quot;Botryococcus braunii&quot;, &#10;&quot;Botryococcus pila&quot;, &quot;Pediastrum duplex var. rugulosum&quot;, &quot;Pediastrum angulosum var. asperum&quot;, &quot;Pediastrum muticum var. scutum&quot;, &quot;Pediastrum angulosum var. angulosum&quot;, &quot;Pediastrum duplex var. duplex&quot;, &quot;Coelastrum reticulatum&quot;, &quot;Hydrodictyon&quot;, &quot;Botryococcus sp.&quot;, &quot;Botryococcus neglectus&quot;, &quot;Pediastrum orientale&quot;, &quot;Pseudopediastrum boryanum&quot;, &quot;Pseudopediastrum kawraiskyi&quot;, &quot;Parapediastrum biradiatum&quot;, &quot;Pseudopediastrum boryanum var. longicorne&quot;, &quot;Pseudopediastrum boryanum var. boryanum&quot;, &quot;Pseudopediastrum boryanum var. boryanum sensu lato&quot;, &#10;&quot;Pseudopediastrum brevicorne&quot;, &quot;Pseudopediastrum integrum&quot;, &quot;Pseudopediastrum boryanum var. cornutum&quot;, &quot;Monactinus simplex&quot;, &quot;Stauridium tetras&quot;, &quot;Monactinus simplex var. echinulatum&quot;, &quot;Monactinus simplex var. simplex&quot;, &quot;Fungi (type 96B, HdV)&quot;, &quot;Trichocladium opacum (type 10, HdV)&quot;, &quot;Xylomyces chlamydosporis/X. aquaticus (type 201, HdV)&quot;, &quot;cf. Trichocladium opacum (type 10, HdV)&quot;, &quot;Dinoflagellata undiff.&quot;, &quot;Dinoflagellata&quot;, &quot;Macrobiotus&quot;, &quot;Macrobiotus cf. M. echinogenitus&quot;, &quot;Acrotritia ardua (type 106, HdV)&quot;, &#10;&quot;Mougeotia cf. M. gracillima (type 61, HdV)&quot;, &quot;Charcoal&quot;, &quot;Fungi (type 8A, HdV)&quot;, &quot;?Microthyrium (type 8, HdV)&quot;, &quot;Fungi (type 8E, HdV)&quot;, &quot;Fungi (type 8A, HdV)&quot;, &quot;Fungi (type 8D, HdV)&quot;, &quot;Glyptotendipes pallens group (type 509, HdV)&quot;, &quot;Fungi (type 408, HdV)&quot;, &quot;Fungi (type 54B, HdV)&quot;, &quot;Tardigrada (type 902, HdV)&quot;, &quot;Oribatida (type 396, HdV)&quot;, &quot;Chironomidae&quot;, &quot;Ceratophyllum&quot;, &quot;Habrotrocha angusticollis&quot;, &quot;Habrotrocha&quot;, &quot;Habrotrocha angusticollis (type 37, HdV)&quot;, &quot;Filinia longiseta&quot;, &quot;Rotifera undiff.&quot;, &#10;&quot;Cladocera&quot;, &quot;Archerella flavum (type 31A, HdV)&quot;, &quot;Gyratrix hermaphroditus&quot;, &quot;Microdalyellia armigera&quot;, &quot;Tardigrada&quot;, &quot;Rotifera/Tardigrada&quot;, &quot;Habrotrocha angusticollis&quot;, &quot;Bryophyta (type 354, HdV)&quot;, &quot;Spirogyra&quot;, &quot;Zygnemataceae&quot;, &quot;Zygnemataceae undiff.&quot;, &quot;Algae&quot;, &quot;Zygnema&quot;, &quot;Mougeotia&quot;, &quot;Mougeotia undiff.&quot;, &quot;Coelastrum reticulatum&quot;, &quot;Scenedesmus&quot;, &quot;Scenedesmus undiff.&quot;, &quot;Tetraëdron minimum&quot;, &quot;Tetraëdron&quot;, &quot;Trochiscia undiff.&quot;, &quot;Desmidiaceae&quot;, &quot;Spirogyra-type&quot;, &quot;Zygnema-type&quot;, &quot;cf. Penium&quot;, &quot;Rhabdocoela&quot;, &#10;&quot;Staurastrum undiff.&quot;, &quot;Mougeotia-type&quot;, &quot;Rivularia&quot;, &quot;Ascaris&quot;, &quot;Transeauina&quot;, &quot;Transeauina undiff.&quot;, &quot;Algae? (type 225, HdV)&quot;, &quot;Ascaris lumbricoides&quot;, &quot;Unknown (type 41, HdV)&quot;, &quot;Chlamydomonadaceae&quot;, &quot;Fungi-type&quot;, &quot;Chrysophyceae&quot;, &quot;Tardigrada undiff.&quot;, &quot;Trichuris trichiura&quot;, &quot;Vermes&quot;, &quot;Unknown (type 224, HdV)&quot;, &quot;Unknown (type 366, HdV)&quot;, &quot;Unknown (type 33, HdV)&quot;, &quot;Fungi (type 73, HdV)&quot;, &quot;Unknown (type 91, HdV)&quot;, &quot;Platyhelminthes (type 353B, HdV)&quot;, &quot;Unknown (type 38, HdV)&quot;, &quot;Anthostomella cf. A. fuegiana (type 4, HdV)&quot;, &#10;&quot;cf. Persiciospora (type 124, HdV)&quot;, &quot;Fungi (type 64, HdV)&quot;, &quot;Unknown (type 74, HdV)&quot;, &quot;Unknown (type 86, HdV)&quot;, &quot;Sigmopollis&quot;, &quot;Unknown (type 160, HdV)&quot;, &quot;Rhabdocoela (type 353, HdV)&quot;, &quot;Dinoflagellata&quot;, &quot;Abies&quot;, &quot;Aesculus&quot;, &quot;Allium&quot;, &quot;Alnus viridis-type&quot;, &quot;Alnus undiff.&quot;, &quot;Ambrosia-type&quot;, &quot;Armeria&quot;, &quot;Artemisia&quot;, &quot;Betula&quot;, &quot;Bidens-type&quot;, &quot;Boraginaceae&quot;, &quot;Callitriche&quot;, &quot;Caltha&quot;, &quot;Carya&quot;, &quot;Caryophyllaceae&quot;, &quot;Castanea&quot;, &quot;Corylus&quot;, &quot;Crataegus-type&quot;, &quot;Brassicaceae undiff.&quot;, &quot;Cupressaceae&quot;, &quot;Cuscuta&quot;, &#10;&quot;Cyperaceae&quot;, &quot;Drosera&quot;, &quot;Dryas-type&quot;, &quot;Empetrum&quot;, &quot;Epilobium&quot;, &quot;Ericaceae&quot;, &quot;Euonymus&quot;, &quot;Euphorbia&quot;, &quot;Fagopyrum&quot;, &quot;Fagus&quot;, &quot;Galium&quot;, &quot;Gentianaceae&quot;, &quot;Geranium&quot;, &quot;Geum-type&quot;, &quot;Hippuris vulgaris&quot;, &quot;Hypericum&quot;, &quot;Ilex&quot;, &quot;Impatiens&quot;, &quot;Larix&quot;, &quot;Rhododendron subsect. Ledum&quot;, &quot;Fabaceae undiff.&quot;, &quot;Lemnoideae&quot;, &quot;Cichorioideae&quot;, &quot;Liquidambar&quot;, &quot;Lonicera&quot;, &quot;Lycopus-type&quot;, &quot;Malvaceae&quot;, &quot;Menyanthes trifoliata&quot;, &quot;Myriophyllum&quot;, &quot;Nuphar&quot;, &quot;Nymphaea&quot;, &quot;Nyssa&quot;, &quot;Parnassia&quot;, &quot;Picea&quot;, &quot;Pinus subg. Pinus&quot;, &quot;Plantago major&quot;, &#10;&quot;Plantago lanceolata&quot;, &quot;Plantago media&quot;, &quot;Platanus&quot;, &quot;Polygonaceae undiff.&quot;, &quot;Persicaria amphibia&quot;, &quot;Polygonum aviculare-type&quot;, &quot;Potentilla-type&quot;, &quot;Primulaceae&quot;, &quot;Prunus-type&quot;, &quot;Quercus&quot;, &quot;Ranunculaceae undiff.&quot;, &quot;Rhamnaceae&quot;, &quot;Rhododendron&quot;, &quot;Ribes&quot;, &quot;Rubus&quot;, &quot;Rumex&quot;, &quot;Sagittaria&quot;, &quot;Salix&quot;, &quot;Sambucus&quot;, &quot;Saxifragaceae&quot;, &quot;Scheuchzeria palustris&quot;, &quot;Scrophulariaceae&quot;, &quot;Sedum&quot;, &quot;Sparganium-type&quot;, &quot;Symplocos&quot;, &quot;Taxus&quot;, &quot;Thalictrum&quot;, &quot;Tilia&quot;, &quot;Tsuga&quot;, &quot;Asteroideae undiff.&quot;, &quot;Typha latifolia&quot;, &quot;Ulmus&quot;, &#10;&quot;Apiaceae&quot;, &quot;Utricularia&quot;, &quot;Vaccinium&quot;, &quot;Valeriana&quot;, &quot;Viburnum undiff.&quot;, &quot;Vitis&quot;, &quot;Xanthium&quot;, &quot;Zea mays&quot;, &quot;Alnus&quot;, &quot;Viola&quot;, &quot;Lythrum&quot;, &quot;Acer&quot;, &quot;Liliaceae&quot;, &quot;Ambrosia&quot;, &quot;Fabaceae&quot;, &quot;Bidens&quot;, &quot;Ranunculaceae&quot;, &quot;Campanulaceae&quot;, &quot;Alnus viridis&quot;, &quot;Rosaceae undiff.&quot;, &quot;Cornus&quot;, &quot;Juniperus-type&quot;, &quot;Ephedra&quot;, &quot;Fraxinus&quot;, &quot;Juglans&quot;, &quot;Larix/Pseudotsuga&quot;, &quot;Myrica-type&quot;, &quot;Ostrya-type&quot;, &quot;Pinus&quot;, &quot;Populus&quot;, &quot;Amaranthaceae&quot;, &quot;Viburnum&quot;, &quot;Asteraceae&quot;, &quot;Avena-type&quot;, &quot;Poaceae (Cerealia)&quot;, &quot;Poaceae&quot;, &quot;Asteroideae&quot;, &quot;Brassica&quot;, &#10;&quot;Brassicaceae&quot;, &quot;Humulus&quot;, &quot;Cannabis sativa&quot;, &quot;Poaceae (Cerealia) undiff.&quot;, &quot;Onagraceae&quot;, &quot;Gentiana&quot;, &quot;Lamiaceae&quot;, &quot;Lysimachia thyrsiflora&quot;, &quot;Oenothera&quot;, &quot;Orchidaceae&quot;, &quot;Pedicularis&quot;, &quot;Plantago&quot;, &quot;Rosaceae&quot;, &quot;Primula&quot;, &quot;Saxifraga&quot;, &quot;Secale-type&quot;, &quot;Stachys-type&quot;, &quot;Trifolium pratense&quot;, &quot;Trifolium repens-type&quot;, &quot;Triticum-type&quot;, &quot;Urtica&quot;, &quot;Alisma&quot;, &quot;Hydrocotyle&quot;, &quot;Lemna&quot;, &quot;Potamogeton&quot;, &quot;Engelhardia-type&quot;, &quot;Lysimachia&quot;, &quot;Polygonum&quot;, &quot;Solanaceae&quot;, &quot;Stellaria&quot;, &quot;Ranunculus&quot;, &quot;Allium-type&quot;, &quot;Andromeda&quot;, &#10;&quot;Andromeda polifolia&quot;, &quot;Arctostaphylos uva-ursi&quot;, &quot;Butomus umbellatus&quot;, &quot;Caltha-type&quot;, &quot;Campanula-type&quot;, &quot;Centaurea&quot;, &quot;Drosera rotundifolia-type&quot;, &quot;Elymus-type&quot;, &quot;Linum&quot;, &quot;Lycopus&quot;, &quot;Lythrum salicaria&quot;, &quot;Mentha-type&quot;, &quot;Myriophyllum alterniflorum&quot;, &quot;Papaveraceae&quot;, &quot;Euphorbiaceae&quot;, &quot;Plantaginaceae&quot;, &quot;Plantago lanceolata-type&quot;, &quot;Polygonaceae&quot;, &quot;Bistorta officinalis-type&quot;, &quot;Prunella-type&quot;, &quot;Prunus&quot;, &quot;Pyrola&quot;, &quot;Rubiaceae&quot;, &quot;Rubus chamaemorus&quot;, &quot;Rumex-type&quot;, &quot;Rumex acetosa-type&quot;, &quot;Salix herbacea-type&quot;, &#10;&quot;Saxifraga oppositifolia-type&quot;, &quot;Micranthes stellaris-type&quot;, &quot;Typha&quot;, &quot;Typha angustifolia&quot;, &quot;Trifolium-type&quot;, &quot;Vaccinium oxycoccos&quot;, &quot;Rhamnus&quot;, &quot;Viburnum opulus&quot;, &quot;Viburnum opulus-type&quot;, &quot;Xanthium-type&quot;, &quot;Polemonium&quot;, &quot;Humulus/Cannabis&quot;, &quot;Vicia-type&quot;, &quot;Potamogeton-type&quot;, &quot;Campanula&quot;, &quot;Ranunculus-type&quot;, &quot;Achillea-type&quot;, &quot;Circaea&quot;, &quot;Potentilla&quot;, &quot;Plantago major-type&quot;, &quot;Stellaria-type&quot;, &quot;Ononis-type&quot;, &quot;Rosa&quot;, &quot;Melampyrum-type&quot;, &quot;Ericales&quot;, &quot;Ericales undiff.&quot;, &quot;Ligustrum&quot;, &quot;Hydrocotyle-type&quot;, &quot;Persicaria maculosa-type&quot;, &#10;&quot;Senecio&quot;, &quot;Persicaria amphibia-type&quot;, &quot;Ceratophyllum&quot;, &quot;Rumex undiff.&quot;, &quot;Sparganium&quot;, &quot;Ericaceae undiff.&quot;, &quot;Saxifragaceae undiff.&quot;, &quot;Oxalis&quot;, &quot;Polygonum aviculare&quot;, &quot;Secale&quot;, &quot;Triglochin&quot;, &quot;Triticum&quot;, &quot;Juniperus&quot;, &quot;Persicaria maculosa&quot;, &quot;cf. Pedicularis&quot;, &quot;Arenaria&quot;, &quot;Ranunculus acris-type&quot;, &quot;Melampyrum&quot;, &quot;Cerastium-type&quot;, &quot;Bupleurum&quot;, &quot;Caryophyllaceae undiff.&quot;, &quot;Gentianella&quot;, &quot;Empetrum-type&quot;, &quot;Pinguicula&quot;, &quot;Papaver&quot;, &quot;Polygala&quot;, &quot;Jasione&quot;, &quot;Trifolium&quot;, &quot;Plantaginaceae undiff.&quot;, &quot;Cardamine-type&quot;, &#10;&quot;Rumex obtusifolius-type&quot;, &quot;Convolvulus-type&quot;, &quot;Typha angustifolia-type&quot;, &quot;Anemone&quot;, &quot;Aconitum&quot;, &quot;Anemone-type&quot;, &quot;Astragalus-type&quot;, &quot;Hedysarum-type&quot;, &quot;Apiaceae undiff.&quot;, &quot;Vaccinium-type&quot;, &quot;Geraniaceae&quot;, &quot;Bistorta officinalis&quot;, &quot;Myriophyllum undiff.&quot;, &quot;Saxifraga undiff.&quot;, &quot;Cirsium&quot;, &quot;Helianthemum&quot;, &quot;Solanum&quot;, &quot;Euphorbia-type&quot;, &quot;Bupleurum-type&quot;, &quot;Typha latifolia-type&quot;, &quot;Pinus sylvestris&quot;, &quot;Picea abies&quot;, &quot;Carex&quot;, &quot;Alnus glutinosa&quot;, &quot;Sanguisorba officinalis&quot;, &quot;Hippophaë rhamnoides&quot;, &quot;Echinops&quot;, &quot;Myriophyllum spicatum&quot;, &#10;&quot;Myriophyllum verticillatum&quot;, &quot;Sorbus aucuparia&quot;, &quot;Corylus avellana&quot;, &quot;Carpinus betulus&quot;, &quot;Fagus sylvatica&quot;, &quot;Vitis vinifera&quot;, &quot;Fagopyrum esculentum&quot;, &quot;Scabiosa&quot;, &quot;Knautia arvensis&quot;, &quot;Viscum&quot;, &quot;Humulus lupulus&quot;, &quot;Centaurea cyanus&quot;, &quot;Salvia&quot;, &quot;Dipsacoideae&quot;, &quot;Dipsacus&quot;, &quot;Centaurea undiff.&quot;, &quot;Hystrix&quot;, &quot;Galium-type&quot;, &quot;Filipendula&quot;, &quot;Carpinus&quot;, &quot;Crataegus&quot;, &quot;Tofieldia&quot;, &quot;Sorbus&quot;, &quot;Convolvulus&quot;, &quot;Carpinus-type&quot;, &quot;Persicaria cf. P. lapathifolia&quot;, &quot;Calystegia&quot;, &quot;Cerastium&quot;, &quot;Rumex acetosella-type&quot;, &quot;Impatiens noli-tangere&quot;, &#10;&quot;Acacia&quot;, &quot;Juglandaceae&quot;, &quot;Thalictrum-type&quot;, &quot;Apium&quot;, &quot;Eryngium-type&quot;, &quot;Vicia/Lathyrus&quot;, &quot;Senecio-type&quot;, &quot;Liliaceae-type&quot;, &quot;Iris&quot;, &quot;Poaceae (Cerealia-type)&quot;, &quot;Lathyrus-type&quot;, &quot;Lotus-type&quot;, &quot;Monocotyledoneae&quot;, &quot;Geum&quot;, &quot;Epilobium-type&quot;, &quot;Viburnum cf. V. opulus&quot;, &quot;Myriophyllum verticillatum-type&quot;, &quot;Trientalis&quot;, &quot;Cardamine&quot;, &quot;Cedrus&quot;, &quot;Mentha&quot;, &quot;Silene&quot;, &quot;Valeriana officinalis&quot;, &quot;Saxifraga oppositifolia&quot;, &quot;Frangula alnus&quot;, &quot;Myriophyllum spicatum-type&quot;, &quot;Olea&quot;, &quot;Oleaceae&quot;, &quot;Carduus&quot;, &quot;Lobelia&quot;, &quot;Anagallis-type&quot;, &#10;&quot;Alchemilla&quot;, &quot;Clematis&quot;, &quot;Gentiana undiff.&quot;, &quot;Gentiana pneumonanthe-type&quot;, &quot;Heracleum&quot;, &quot;Dianthus-type&quot;, &quot;Gentiana-type&quot;, &quot;Montia&quot;, &quot;Typha angustifolia/Sparganium&quot;, &quot;Myosotis&quot;, &quot;Castanea sativa&quot;, &quot;Pterocarya&quot;, &quot;Hippophaë&quot;, &quot;Daphne&quot;, &quot;Hedera&quot;, &quot;Knautia&quot;, &quot;Trapa&quot;, &quot;Euphrasia&quot;, &quot;Veronica&quot;, &quot;Sequoia&quot;, &quot;Echium&quot;, &quot;Stachys&quot;, &quot;Valerianella&quot;, &quot;Calluna vulgaris&quot;, &quot;Drosera rotundifolia&quot;, &quot;Drosera intermedia&quot;, &quot;Lotus&quot;, &quot;Plantago major/P. media&quot;, &quot;Scleranthus perennis&quot;, &quot;Scleranthus&quot;, &quot;Scleranthus-type&quot;, &quot;Stellaria holostea&quot;, &#10;&quot;Succisa&quot;, &quot;Symphytum&quot;, &quot;Symphytum-type&quot;, &quot;Astragalus alpinus-type&quot;, &quot;Cirsium-type&quot;, &quot;Elatine&quot;, &quot;Frangula&quot;, &quot;Mercurialis&quot;, &quot;Rhinanthus&quot;, &quot;Rhinanthus-type&quot;, &quot;Spergula&quot;, &quot;Spergula-type&quot;, &quot;Spergularia-type&quot;, &quot;Vicia&quot;, &quot;Brassicaceae-type&quot;, &quot;Eryngium&quot;, &quot;Ranunculus aquatilis-type&quot;, &quot;Persicaria lapathifolia&quot;, &quot;Rumex acetosella&quot;, &quot;Erodium&quot;, &quot;Betula nana&quot;, &quot;Teucrium&quot;, &quot;Ulex-type&quot;, &quot;Glaucium&quot;, &quot;Plantago media-type&quot;, &quot;Ephedra distachya&quot;, &quot;Ephedra fragilis&quot;, &quot;Gypsophila-type&quot;, &quot;Pinus cembra&quot;, &quot;Sagina-type&quot;, &quot;Veronica-type&quot;, &#10;&quot;Fallopia convolvulus&quot;, &quot;Nymphaea alba&quot;, &quot;Alisma plantago-aquatica&quot;, &quot;Anthemis-type&quot;, &quot;Aster-type&quot;, &quot;Centaurea jacea&quot;, &quot;Centaurea scabiosa&quot;, &quot;Epipactis&quot;, &quot;Rumex subg. Rumex&quot;, &quot;Galeopsis&quot;, &quot;Galeopsis-type&quot;, &quot;Genista-type&quot;, &quot;Lamium-type&quot;, &quot;Sorbus-type&quot;, &quot;Betula pubescens&quot;, &quot;Echium vulgare&quot;, &quot;Tilia cordata&quot;, &quot;Tilia platyphyllos&quot;, &quot;Aconitum-type&quot;, &quot;Centaurea cyanus-type&quot;, &quot;Centaurea scabiosa-type&quot;, &quot;Cornus sanguinea&quot;, &quot;Ephedra distachya-type&quot;, &quot;Ephedra fragilis-type&quot;, &quot;Fraxinus excelsior&quot;, &quot;Fraxinus ornus&quot;, &#10;&quot;Helleborus&quot;, &quot;Hypericum perforatum-type&quot;, &quot;Loranthus&quot;, &quot;Matricaria-type&quot;, &quot;Plantago maritima-type&quot;, &quot;Sambucus nigra-type&quot;, &quot;Solanum dulcamara&quot;, &quot;Gentianaceae undiff.&quot;, &quot;Platycarya&quot;, &quot;Betula nana-type&quot;, &quot;Abies alba&quot;, &quot;Barbarea-type&quot;, &quot;Cardamine pratensis-type&quot;, &quot;Chrysosplenium&quot;, &quot;Ephedra foeminea-type&quot;, &quot;Larix decidua&quot;, &quot;Lysimachia vulgaris-type&quot;, &quot;Lysimachia vulgaris&quot;, &quot;Parnassia palustris&quot;, &quot;Petasites-type&quot;, &quot;Pleurospermum&quot;, &quot;Ranunculus arvensis-type&quot;, &quot;Silene-type&quot;, &quot;Trifolium pratense-type&quot;, &#10;&quot;Hordeum-type&quot;, &quot;Achillea&quot;, &quot;Agrimonia&quot;, &quot;Alchemilla-type&quot;, &quot;Alnus glutinosa-type&quot;, &quot;Alnus glutinosa/A. incana&quot;, &quot;Anagallis arvensis-type&quot;, &quot;Anagallis tenella-type&quot;, &quot;Anagallis arvensis&quot;, &quot;Anagallis&quot;, &quot;Anthericum&quot;, &quot;Anthericum-type&quot;, &quot;Anchusa/Pulmonaria&quot;, &quot;Pulmonaria&quot;, &quot;Pulmonaria-type&quot;, &quot;Anthriscus caucalis&quot;, &quot;Anthriscus sylvestris-type&quot;, &quot;Anthriscus-type&quot;, &quot;Anthriscus sylvestris&quot;, &quot;Anthyllis&quot;, &quot;Silene dioica-type&quot;, &quot;Silene vulgaris-type&quot;, &quot;Apium-type&quot;, &quot;Apium inundatum-type&quot;, &quot;Arctium&quot;, &quot;Cirsium/Carduus&quot;, &#10;&quot;Arctous alpina&quot;, &quot;Arctostaphylos uva-ursi-type&quot;, &quot;Armeria maritima-type&quot;, &quot;Armeria maritima (type B)&quot;, &quot;Armeria maritima (type A)&quot;, &quot;Aruncus&quot;, &quot;Astragalus danicus-type&quot;, &quot;Vicia cracca-type&quot;, &quot;Avena/Triticum-type&quot;, &quot;Hordeum&quot;, &quot;Secale cereale&quot;, &quot;Fallopia convolvulus-type&quot;, &quot;Fallopia convolvulus/F. dumetorum&quot;, &quot;Bupleurum falcatum-type&quot;, &quot;Butomus-type&quot;, &quot;Butomus&quot;, &quot;Caltha palustris-type&quot;, &quot;Campanula rapunculoides&quot;, &quot;Scilla-type&quot;, &quot;Castanea-type&quot;, &quot;Centaurea jacea-type&quot;, &quot;Centaurea montana-type&quot;, &quot;Centaurea nigra-type&quot;, &#10;&quot;Cerastium fontanum-type&quot;, &quot;Dryas octopetala&quot;, &quot;Rumex acetosa&quot;, &quot;Rumex aquaticus-type&quot;, &quot;Rumex obtusifolius&quot;, &quot;Rumex maritimus-type&quot;, &quot;cf. Papaver&quot;, &quot;Papaver rhoeas-type&quot;, &quot;Pedicularis palustris-type&quot;, &quot;Rhinanthus/Veronica&quot;, &quot;Veronica beccabunga-type&quot;, &quot;Veronica beccabunga&quot;, &quot;Saussurea-type&quot;, &quot;Sedum-type&quot;, &quot;Digitalis purpurea-type&quot;, &quot;cf. Lobelia&quot;, &quot;Scrophularia-type&quot;, &quot;Scrophularia&quot;, &quot;Chrysosplenium-type&quot;, &quot;Cicuta virosa&quot;, &quot;Convolvulus arvensis&quot;, &quot;Helianthemum nummularium-type&quot;, &quot;Helianthemum oelandicum subsp. alpestris-type&quot;, &#10;&quot;Cladium mariscus&quot;, &quot;Convallaria&quot;, &quot;Cornus suecica&quot;, &quot;Cornus mas&quot;, &quot;Cuscuta europaea-type&quot;, &quot;Daucus-type&quot;, &quot;Daucus carota&quot;, &quot;Daucus&quot;, &quot;Dianthus&quot;, &quot;Echium-type&quot;, &quot;Erica ciliaris-type&quot;, &quot;Ephedra foeminea&quot;, &quot;Ephedra cf. E. foeminea&quot;, &quot;Ephedra cf. E. fragilis&quot;, &quot;Ephedra cf. E. distachya&quot;, &quot;Eriophorum&quot;, &quot;Euonymus europaeus&quot;, &quot;Euphrasia-type&quot;, &quot;Fagopyrum-type&quot;, &quot;Genista&quot;, &quot;Gentiana cruciata-type&quot;, &quot;Gentianella campestris-type&quot;, &quot;Geranium-type&quot;, &quot;Gnaphalium-type&quot;, &quot;Gypsophila&quot;, &quot;Gypsophila repens-type&quot;, &#10;&quot;Gypsophila repens&quot;, &quot;Hedera helix&quot;, &quot;Heracleum-type&quot;, &quot;Heracleum sphondylium&quot;, &quot;Herniaria&quot;, &quot;Herniaria-type&quot;, &quot;Hottonia palustris&quot;, &quot;Samolus valerandi&quot;, &quot;Hydrocotyle vulgaris&quot;, &quot;Iris pseudacorus-type&quot;, &quot;Iris-type&quot;, &quot;Iris pseudacorus&quot;, &quot;Jasione montana&quot;, &quot;Jasione-type&quot;, &quot;Juniperus communis&quot;, &quot;Succisa pratensis&quot;, &quot;Succisa-type&quot;, &quot;Larix-type&quot;, &quot;Rhododendron tomentosum&quot;, &quot;Linum catharticum&quot;, &quot;Linum catharticum-type&quot;, &quot;Linum usitatissimum-type&quot;, &quot;Linum flavum&quot;, &quot;Linum austriacum-type&quot;, &quot;Listera-type&quot;, &#10;&quot;Lithospermum officinale&quot;, &quot;Lonicera periclymenum&quot;, &quot;Lonicera xylosteum&quot;, &quot;Loranthus europaeus&quot;, &quot;Lotus cf. L. corniculatus&quot;, &quot;Lysimachia nemorum&quot;, &quot;Lysimachia-type&quot;, &quot;Lysimachia cf. L. vulgaris&quot;, &quot;Lysimachia nemorum-type&quot;, &quot;Lythrum portula-type&quot;, &quot;Lythrum-type&quot;, &quot;Maianthemum bifolium&quot;, &quot;Malus&quot;, &quot;Malus-type&quot;, &quot;Malva-type&quot;, &quot;Marrubium&quot;, &quot;Menyanthes trifoliata-type&quot;, &quot;Mercurialis perennis-type&quot;, &quot;Muscari&quot;, &quot;Myosotis arvensis-type&quot;, &quot;Myricaria germanica&quot;, &quot;Myriophyllum cf. M. spicatum&quot;, &quot;Myriophyllum cf. M. verticillatum&quot;, &#10;&quot;Nymphaea cf. N. candida&quot;, &quot;Nymphaea alba-type&quot;, &quot;Odontites&quot;, &quot;Odontites-type&quot;, &quot;Onobrychis&quot;, &quot;Ononis&quot;, &quot;Ornithogalum-type&quot;, &quot;Phragmites&quot;, &quot;Phragmites-type&quot;, &quot;Phragmites australis&quot;, &quot;Pimpinella major-type&quot;, &quot;Pimpinella anisum&quot;, &quot;Pinus subg. Strobus-type&quot;, &quot;Pinus sylvestris-type&quot;, &quot;Pinus cembra-type&quot;, &quot;Pisum sativum&quot;, &quot;Plantago coronopus&quot;, &quot;Plantago alpina-type&quot;, &quot;Plantago atrata-type&quot;, &quot;Plantago alpina&quot;, &quot;Pleurospermum austriacum&quot;, &quot;Pleurospermum austriacum-type&quot;, &quot;Polemonium caeruleum&quot;, &quot;Primula farinosa-type&quot;, &#10;&quot;Primula veris-type&quot;, &quot;Pterocarya fraxinifolia&quot;, &quot;Quercus coccifera&quot;, &quot;Ranunculus flammula-type&quot;, &quot;Ranunculus arvensis&quot;, &quot;Reseda&quot;, &quot;Reseda lutea-type&quot;, &quot;Ribes alpinum&quot;, &quot;Rosa-type&quot;, &quot;Sagina&quot;, &quot;Sambucus ebulus&quot;, &quot;Sambucus nigra&quot;, &quot;Sambucus racemosa&quot;, &quot;Sambucus cf. S. nigra&quot;, &quot;Sambucus cf. S. ebulus&quot;, &quot;Sambucus cf. S. racemosa&quot;, &quot;Sanguisorba minor-type&quot;, &quot;Saxifraga granulata-type&quot;, &quot;Saxifraga hirculus-type&quot;, &quot;Micranthes stellaris&quot;, &quot;Saxifraga granulata&quot;, &quot;Saxifraga aizoides-type&quot;, &quot;Scabiosa columbaria-type&quot;, &#10;&quot;Sciadopitys&quot;, &quot;Scleranthus annuus&quot;, &quot;Serratula-type&quot;, &quot;Serratula&quot;, &quot;Sinapis-type&quot;, &quot;Solanum cf. S. nigrum&quot;, &quot;Solanum nigrum&quot;, &quot;Solanum nigrum-type&quot;, &quot;Stratiotes aloides&quot;, &quot;Taxus baccata&quot;, &quot;Thesium&quot;, &quot;Tilia undiff.&quot;, &quot;Sparganium erectum&quot;, &quot;Trapa natans&quot;, &quot;Trientalis europaea&quot;, &quot;Trollius&quot;, &quot;Trollius europaeus&quot;, &quot;Trollius-type&quot;, &quot;Ulmus/Zelkova&quot;, &quot;Valeriana dioica&quot;, &quot;Valeriana officinalis-type&quot;, &quot;Valeriana cf. V. dioica&quot;, &quot;Valeriana dioica-type&quot;, &quot;Verbascum&quot;, &quot;Viburnum lantana&quot;, &quot;Viola palustris-type&quot;, &#10;&quot;Viola tricolor&quot;, &quot;Viola palustris&quot;, &quot;cf. Lamiaceae&quot;, &quot;Scutellaria&quot;, &quot;Glyceria-type&quot;, &quot;Sanicula europaea&quot;, &quot;Sanicula-type&quot;, &quot;Anemone nemorosa-type&quot;, &quot;Veratrum-type&quot;, &quot;Veratrum&quot;, &quot;Veratrum album&quot;, &quot;Oenanthe-type&quot;, &quot;Oenanthe&quot;, &quot;Chelidonium&quot;, &quot;Chelidonium majus&quot;, &quot;Polygonatum&quot;, &quot;Peucedanum palustre-type&quot;, &quot;Peucedanum-type&quot;, &quot;Peucedanum&quot;, &quot;Hyoscyamus&quot;, &quot;Cerinthe&quot;, &quot;Cerinthe minor&quot;, &quot;Androsace-type&quot;, &quot;Crupina&quot;, &quot;Phyteuma-type&quot;, &quot;Astrantia-type&quot;, &quot;Swertia perennis&quot;, &quot;Agrostemma githago&quot;, &quot;Petasites&quot;, &quot;Chaerophyllum&quot;, &#10;&quot;Succisella&quot;, &quot;Lamiaceae (tricolpate)&quot;, &quot;Laserpitium&quot;, &quot;Betula pubescens-type&quot;, &quot;Chaerophyllum hirsutum-type&quot;, &quot;Falcaria vulgaris&quot;, &quot;Heliotropium europaeum&quot;, &quot;Ludwigia palustris&quot;, &quot;Phyteuma&quot;, &quot;Ailanthus&quot;, &quot;Plantago major/P. media-type&quot;, &quot;Rumex acetosa/R. acetosella&quot;, &quot;Cannabis-type&quot;, &quot;Vaccinioideae&quot;, &quot;Menyanthes&quot;, &quot;Persicaria&quot;, &quot;Bistorta&quot;, &quot;Scheuchzeria&quot;, &quot;Faboideae&quot;, &quot;Calla&quot;, &quot;Calluna&quot;, &quot;Typhaceae&quot;, &quot;Chamaenerion angustifolium&quot;, &quot;Centaurea stoebe&quot;, &quot;Prunus sp.&quot;, &quot;Potamogeton natans-type&quot;, &quot;Potentilla/Comarum&quot;, &#10;&quot;Cryptomeria&quot;, &quot;Pinus sp.&quot;, &quot;Parnassia-type&quot;, &quot;Polygonum sp.&quot;, &quot;Anemone sect. Pulsatilla&quot;, &quot;Anemone sect. Hepatica-type&quot;, &quot;Oxyria-type&quot;, &quot;Ranunculus sect. Batrachium&quot;, &quot;Arnica montana&quot;, &quot;Silenoideae-type&quot;, &quot;Cerastium arvense-type&quot;, &quot;Cerastium cerastoides-type&quot;, &quot;Medicago falcata-type&quot;, &quot;Minuartia-type&quot;, &quot;Seseli-type&quot;, &quot;Soldanella&quot;, &quot;Rhus-type&quot;, &quot;Chamaenerion angustifolium-type&quot;, &quot;Sium latifolium-type&quot;, &quot;Humulus/Cannabis-type&quot;, &quot;Bruckenthalia-type&quot;, &quot;Consolida-type&quot;, &quot;Cuscuta epithymum&quot;, &quot;Comarum&quot;, &#10;&quot;Comarum palustre&quot;, &quot;Comarum-type&quot;, &quot;Chamaenerion&quot;, &quot;Sagittaria-type&quot;, &quot;Orlaya grandiflora&quot;, &quot;Plantago sp.&quot;, &quot;Actaea spicata&quot;, &quot;Adonis annua-type&quot;, &quot;Adonis aestivalis-type&quot;, &quot;Adonis aestivalis/A. flammea&quot;, &quot;Aethusa cynapium&quot;, &quot;Androsace elongata-type&quot;, &quot;Anemone nemorosa group&quot;, &quot;Aphanes&quot;, &quot;Arenaria serpyllifolia-type&quot;, &quot;Astragalus exscapus&quot;, &quot;Astrantia major&quot;, &quot;Bambusa-type&quot;, &quot;Ranunculus sect. Batrachium-type&quot;, &quot;Bryonia alba/Helianthemum&quot;, &quot;Campanula/Phyteuma&quot;, &quot;Carum carvi&quot;, &quot;Sileneae&quot;, &quot;Cedrus-type&quot;, &#10;&quot;Centaurea alpina-type&quot;, &quot;Centaurea stoebe-type&quot;, &quot;Centaurea jacea/C. stoebe&quot;, &quot;Centaurea sp.&quot;, &quot;Poaceae (Cerealia) excluding Secale&quot;, &quot;Chaerophyllum hirsutum&quot;, &quot;cf. Helianthemum&quot;, &quot;Illecebrum verticillatum&quot;, &quot;Falcaria-type&quot;, &quot;Laserpitium latifolium-type&quot;, &quot;Silene flos-cuculi&quot;, &quot;Silene viscaria-type&quot;, &quot;Silene vulgaris&quot;, &quot;Microrrhinum minus&quot;, &quot;Onopordum&quot;, &quot;Potentilla/Comarum-type&quot;, &quot;Coniferae-type&quot;, &quot;Consolida regalis&quot;, &quot;Coronilla undiff.&quot;, &quot;Descurainia sophia&quot;, &quot;Empetrum nigrum-type&quot;, &quot;Eranthis hyemalis-type&quot;, &#10;&quot;Filipendula ulmaria/F. vulgaris&quot;, &quot;Fumaria-type&quot;, &quot;Galeopsis/Ballota-type&quot;, &quot;Glaucium corniculatum&quot;, &quot;Gratiola officinalis&quot;, &quot;Anemone hepatica&quot;, &quot;Hypericum perforatum/H. androsaemum-type&quot;, &quot;Impatiens parviflora&quot;, &quot;Juglandaceae-type&quot;, &quot;Knautia arvensis-type&quot;, &quot;Lamium album-type&quot;, &quot;Vicia/Lathyrus-type&quot;, &quot;Listera ovata&quot;, &quot;Magnolia-type&quot;, &quot;Malus undiff.&quot;, &quot;Myriophyllum heterophyllum&quot;, &quot;Nymphaea undiff.&quot;, &quot;Normapolles&quot;, &quot;Nymphoides peltata-type&quot;, &quot;Ornithogalum umbellatum-type&quot;, &quot;Papaver somniferum&quot;, &#10;&quot;Pimpinella major&quot;, &quot;Pimpinella major/P. saxifraga&quot;, &quot;Poaceae (Cerealia-type excluding Secale)&quot;, &quot;Podocarpus-type&quot;, &quot;Koenigia alpina&quot;, &quot;Potentilla/Fragaria&quot;, &quot;Primula clusiana-type&quot;, &quot;Quercus pubescens&quot;, &quot;Ribes uva-crispa&quot;, &quot;Poterium sanguisorba&quot;, &quot;Poterium sanguisorba subsp. sanguisorba&quot;, &quot;Rumex cf. R. alpinus&quot;, &quot;Rumex/Oxyria-type&quot;, &quot;Sagina procumbens-type&quot;, &quot;Sambucus nigra/S. racemosa&quot;, &quot;Scabiosa columbaria subsp. pratensis-type&quot;, &quot;Scandix pecten-veneris/Caucalis platycarpos&quot;, &quot;Sciadopitys-type&quot;, &#10;&quot;Scleranthus annuus-type&quot;, &quot;Scleranthus cf. S. annuus&quot;, &quot;Scleranthus cf. S. perennis&quot;, &quot;Scleranthus perennis-type&quot;, &quot;Securigera varia&quot;, &quot;Silene latifolia&quot;, &quot;Sorbus aria-type&quot;, &quot;Sorbus torminalis&quot;, &quot;Sorbus group&quot;, &quot;Typha angustifolia/Sparganium-type&quot;, &quot;Symphytum cf. S. officinale&quot;, &quot;Pinus (Tertiary)&quot;, &quot;Thesium-type&quot;, &quot;Tsuga diversifolia-type&quot;, &quot;Tsuga-type&quot;, &quot;Turgenia latifolia&quot;, &quot;Umbilicus rupestris-type&quot;, &quot;Valeriana cf. V. officinalis&quot;, &quot;Viola canina-type&quot;, &quot;Anthemis arvensis-type&quot;, &quot;Silene-type undiff.&quot;, &#10;&quot;Lotus pedunculatus&quot;, &quot;cf. Androsace&quot;, &quot;Adenostyles alliariae&quot;, &quot;Petasites hybridus-type&quot;, &quot;Ranunculus acris/R. flammula/R. sceleratus group&quot;, &quot;Senecio/Aster&quot;, &quot;Juncus sp. (type 2.2, MI)&quot;, &quot;Indeterminable&quot;, &quot;Unknown&quot;, &quot;Indeterminable undiff.&quot;, &quot;Varia&quot;, &quot;Alona rustica (type 72, HdV)&quot;, &quot;Copepoda&quot;, &quot;Porifera&quot;, &quot;Athyrium&quot;, &quot;Botrychium&quot;, &quot;Dryopteris-type&quot;, &quot;Equisetum&quot;, &quot;Fungi undiff.&quot;, &quot;Isoëtes&quot;, &quot;Lycopodiaceae undiff.&quot;, &quot;Diphasiastrum alpinum&quot;, &quot;Lycopodium annotinum&quot;, &quot;Lycopodium clavatum&quot;, &quot;Lycopodiella inundata&quot;, &#10;&quot;Huperzia selago&quot;, &quot;Unknown (monolete) undiff.&quot;, &quot;Polypodiaceae&quot;, &quot;Selaginella&quot;, &quot;Sphagnum&quot;, &quot;Unknown (trilete) undiff.&quot;, &quot;Unknown&quot;, &quot;Unknown (trilete)&quot;, &quot;Unknown (monolete)&quot;, &quot;Ophioglossum&quot;, &quot;Fungi&quot;, &quot;Athyrium filix-femina&quot;, &quot;Cystopteris&quot;, &quot;Dryopteris&quot;, &quot;Diphasiastrum complanatum&quot;, &quot;Diphasiastrum alpinum-type&quot;, &quot;Lycopodium annotinum-type&quot;, &quot;Pteridophyta&quot;, &quot;Pteridium aquilinum&quot;, &quot;Selaginella selaginoides&quot;, &quot;Pteridium&quot;, &quot;Dryopteris carthusiana-type&quot;, &quot;Polypodium&quot;, &quot;Tilletia sphagni&quot;, &quot;Lycopodium clavatum-type&quot;, &#10;&quot;Bryales&quot;, &quot;Marchantiophyta&quot;, &quot;Bryophyta&quot;, &quot;Lycopodiaceae&quot;, &quot;Ophioglossum vulgatum&quot;, &quot;Riccia&quot;, &quot;Anthoceros&quot;, &quot;Dryopteris filix-mas-type&quot;, &quot;Asplenium&quot;, &quot;Thelypteris palustris&quot;, &quot;Sporormiella&quot;, &quot;Thecaphora&quot;, &quot;Hymenophyllum&quot;, &quot;Anthoceros laevis&quot;, &quot;Pteridophyta (monolete, verrucate)&quot;, &quot;Asplenium-type&quot;, &quot;cf. Entophlyctis lobata&quot;, &quot;Lycopodiaceae cf. Diphasiastrum complanatum&quot;, &quot;Polypodium vulgare&quot;, &quot;Unknown (monolete, psilate)&quot;, &quot;Isoëtes lacustris&quot;, &quot;Athyrium-type&quot;, &quot;Blechnum&quot;, &quot;Thelypteris&quot;, &quot;Microthyrium&quot;, &#10;&quot;Gymnocarpium dryopteris&quot;, &quot;Lycopodium&quot;, &quot;Lycopodium undiff.&quot;, &quot;Pilularia&quot;, &quot;Pteridophyta (monolete) undiff.&quot;, &quot;Phegopteris connectilis&quot;, &quot;cf. Riccia&quot;, &quot;Anthoceros laevis-type&quot;, &quot;Entophlyctis lobata&quot;, &quot;Diporotheca&quot;, &quot;Glomus&quot;, &quot;Microthyrium-type&quot;, &quot;Sordariaceae&quot;, &quot;Dryopteris dilatata-type&quot;, &quot;Helicoön pluriseptatum&quot;, &quot;Polypodiophyta (monolete, psilate)&quot;, &quot;Phegopteris&quot;, &quot;Equisetaceae&quot;, &quot;Unknown (pre-Quaternary)&quot;, &quot;Meliola&quot;, &quot;Neurospora&quot;, &quot;Xylariaceae&quot;, &quot;Ustulina deusta&quot;, &quot;Polypodiophyta (monolete, verrucate)&quot;, &#10;&quot;Geoglossum sphagnophilum&quot;, &quot;Sordaria-type (type 55A, HdV)&quot;, &quot;Fungi (type 200, HdV)&quot;, &quot;Adiantum capillus-veneris&quot;, &quot;Anthoceros punctatus-type&quot;, &quot;Byssothecium circinans&quot;, &quot;cf. Diphasiastrum-type&quot;, &quot;Cicatricosporites australiensis&quot;, &quot;Coniochaeta cf. C. ligniaria&quot;, &quot;Encalypta-type&quot;, &quot;Glomus cf. G. fasciculatum&quot;, &quot;Selaginellaceae&quot;, &quot;Unknown (type 181, HdV)&quot;, &quot;Fungi (type 18, HdV)&quot;, &quot;Byssothecium circinans (type 16C, HdV)&quot;, &quot;Fungi (type 17, HdV)&quot;, &quot;Fungi (type 3A, HdV)&quot;, &quot;Fungi (type 8E, HdV)&quot;, &quot;Fungi (type 83, HdV)&quot;, &#10;&quot;Fungi (type 90, HdV)&quot;, &quot;Fungi (type 571, HdV)&quot;, &quot;cf. Endophragmia (type 572, HdV)&quot;, &quot;Fungi (type 23, HdV)&quot;, &quot;Aspiromitus punctatus&quot;, &quot;Fungi (type 73, HdV)&quot;, &quot;Byssothecium circinans (type 16B, HdV)&quot;, &quot;Fungi (type 53, HdV)&quot;, &quot;Sordariaceae/Sordaria (type 55B, HdV)&quot;, &quot;Geoglossum sphagnophilum (type 77A, HdV)&quot;, &quot;cf. Spadicoides bina (type 98, HdV)&quot;, &quot;Delitschia&quot;, &quot;Fungi (type 65, HdV)&quot;, &quot;Brachysporium obovatum/B. bloxami/Bactrodesmium betulicola (type 359, HdV)&quot;, &quot;Helicosporium/Helicoön pluriseptatum (type 30, HdV)&quot;, &#10;&quot;Fungi (type 173, HdV)&quot;, &quot;Fungi (type 20, HdV)&quot;, &quot;Fungi (type 729, HdV)&quot;, &quot;Podospora sp./Zopfiella sp. (type 466, HdV)&quot;, &quot;Fungi (type 778. HdV)&quot;, &quot;Brachysporium pendulisporum (type 360, HdV)&quot;, &quot;Byssothecium circinans (type 16A, HdV)&quot;, &quot;Sporormiella (type 113, HdV)&quot;, &quot;cf. Actinopeltis (type 8C, HdV)&quot;, &quot;Algae (type 209, HdV)&quot;, &quot;Ustulina deusta (type 44, HdV)&quot;, &quot;Tilletia sphagni (type 27, HdV)&quot;, &quot;Pleospora sp. (type 3B, HdV)&quot;, &quot;Lasiosphaeria sp. (type 63C, HdV)&quot;, &quot;Entorrhiza sp. (type HdV-527)&quot;, &quot;Fungi (type 123, HdV)&quot;, &#10;&quot;Unknown (type 708, HdV)&quot;, &quot;Clasterosporium caricinum (type 126, HdV)&quot;, &quot;Coniochaeta ligniaria (type 172, HdV)&quot;, &quot;cf. Richonia variospora (type 140, HdV)&quot;, &quot;Fungi (type 404, HdV)&quot;, &quot;Gelasinospora (type 1A, HdV)&quot;, &quot;Gelasinospora (type 1B, HdV)&quot;, &quot;Microthyriaceae&quot;, &quot;Picea&quot;, &quot;Pinus&quot;, &quot;Amphitrema&quot;, &quot;Amphitrema wrightianum&quot;, &quot;Assulina&quot;, &quot;Assulina muscorum&quot;, &quot;Assulina seminulum&quot;, &quot;Difflugia&quot;, &quot;Euglypha&quot;, &quot;Hyalosphenia papilio&quot;, &quot;Arcella&quot;, &quot;Centropyxis&quot;, &quot;Hyalosphenia subflava&quot;, &quot;Nebela&quot;, &quot;Amphitrema undiff.&quot;, &#10;&quot;Centropyxis aculeata&quot;, &quot;Arcella discoides&quot;, &quot;Rhizopoda undiff.&quot;, &quot;Nebela undiff.&quot;, &quot;Nebela parvula&quot;, &quot;Archerella flavum&quot;, &quot;Amphitrema sp.&quot;, &quot;Arcella cf. A. megastoma&quot;, &quot;Arcella sp.&quot;, &quot;Assulina sp.&quot;, &quot;Rhizopoda&quot;, &quot;Pyxidicula&quot;, &quot;Nymphaeaceae&quot;, &quot;Lepidoptera&quot;, &quot;Pinnularia&quot;, &quot;Eunotia sp.&quot;, &quot;Spirogyra&quot;, &quot;Zygnemataceae&quot;, &quot;Spirogyra cf. S. scrobiculata&quot;, &quot;Transeauina (type 214, HdV)&quot;, &quot;Charcoal&quot;, &quot;Charcoal&quot;, &quot;Charcoal&quot;, &quot;Charcoal&quot;, &quot;Lycopodium tablets&quot;, &quot;Lycopodium spike&quot;, &quot;Charcoal&quot;, &quot;Lycopodium tablets&quot;, &#10;&quot;Lycopodium spike&quot;, &quot;Charcoal&quot;) c(&quot;LABO&quot;, &quot;LABO&quot;, &quot;LABO&quot;, &quot;ANAC&quot;, &quot;ANAC&quot;, &quot;ANAC&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;ARTH&quot;, &quot;FLWO&quot;, &quot;FLWO&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &#10;&quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;DINO&quot;, &quot;DINO&quot;, &quot;ANIM&quot;, &quot;ANIM&quot;, &quot;ACAR&quot;, &quot;ALGA&quot;, &quot;CHAR&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;DIPT&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;ANIM&quot;, &quot;ACAR&quot;, &quot;DIPT&quot;, &quot;AQVP&quot;, &quot;ROTI&quot;, &quot;ROTI&quot;, &quot;ROTI&quot;, &quot;ROTI&quot;, &quot;ROTI&quot;, &quot;CLAD&quot;, &quot;TEAM&quot;, &quot;FLWO&quot;, &quot;FLWO&quot;, &quot;ANIM&quot;, &quot;ANIM&quot;, &quot;ROTI&quot;, &quot;UPBR&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &#10;&quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;FLWO&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;NEMA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;ALGA&quot;, &quot;NEMA&quot;, &quot;UNID&quot;, &quot;ALGA&quot;, &quot;UNID&quot;, &quot;ALGA&quot;, &quot;ANIM&quot;, &quot;NEMA&quot;, &quot;ANIM&quot;, &quot;UNID&quot;, &quot;UNID&quot;, &quot;UNID&quot;, &quot;FUNG&quot;, &quot;UNID&quot;, &quot;FLWO&quot;, &quot;UNID&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;FUNG&quot;, &quot;UNID&quot;, &quot;UNID&quot;, &quot;ALGA&quot;, &quot;UNID&quot;, &quot;FLWO&quot;, &quot;DINO&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;AQVP&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &#10;&quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;AQVP&quot;, &quot;AQVP&quot;, &quot;AQVP&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;UPHE&quot;, &#10;&quot;UPHE&quot;, &quot;AQVP&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;AQVP&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;TRSH&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, &quot;UPHE&quot;, 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1, 1, 1, 1, 23, 1, 57, 1, 8, 1, 2, 44, 20, 74, 3, 1, 2, 1, 56, 44, 4, 7, 5, 42, 3, 77, 7, 4, 1, 14, 13, 6, 6, 1, 2, 1, 1, 5, 3, 46, 19, 22, 1, 15, 12, 3, 40, 3, 10, 12, 2, 3, 5, 4, 1, 7, 1, 4, 1, 5, 2, 1, 3, 1, 30, &#10;2, 1, 1, 2, 1, 2, 8, 4, 1, 1, 5, 1, 1, 1, 8, 2, 2, 1, 1, 2, 3, 1, 2, 1, 2, 1, 1, 1, 1, 1, 1, 3, 1, 2, 1, 3, 1, 1, 1, 1, 1, 1, 1, 3, 3, 2, 4, 2, 3, 4, 2, 2, 2, 13, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 7, 4, 2, 5, 5, 6, 7, 3, 1, 8, 1, 14, 1, 5, 5, 1, 1, 2, 5, 1, 1, 20, 1, 1, 2, 2, 4, 1, 5, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 8, 2, 5, 1, 5) c(130, 80, 368, 137, 6, 16, 27, 19, 223, 1, 5, 17, 1, 131, 50, 155, 55, 53, 83, 1, 7, 8, 56, 13, 7, 3, 1, 90, 12, 63, 2, 18, 32, 42, 4, 1, 98, 12, 1, 7, 2, 1, 5, 1, 38, 4, 2, 3, 2, 1, 21, 52, 1, 3, 1, 60, 23, 58, 475, 36, 4, 165, 41, 148, 18, 211, 2, 4, 69, 1, 1, 1, 21, 7, 37, 208, 36, 1, 253, 58, 211, 6, 297, 150, 29, 14, 32, 47, 30, 14, 17, 49, 9, 34, 2, 2, 1, 4, 140, 32, 15, 4, 14, 21, 2, 4, 5, 1, 2, 4, 128, 200, 8, 34, 22, 6, 5, 26, 66, 140, 13, 1, 51, 4, 72, 21, 40, 18, 20, 188, 2, 49, 225, &#10;7, 138, 137, 5, 48, 5, 25, 2, 71, 1, 1, 7, 13, 1, 8, 1, 2, 17, 2, 8, 1, 3, 6, 1, 4, 6, 19, 1, 9, 33, 2, 5, 1, 52, 2, 2, 2, 5, 10, 54, 1822, 3, 46, 5, 130, 26, 11, 3419, 3727, 3, 37, 11, 25, 37, 288, 18, 2273, 7, 22, 11, 64, 3751, 20, 1, 5, 150, 202, 28, 18, 46, 2328, 218, 15, 79, 31, 3, 143, 15, 17, 99, 12, 5, 12, 1869, 3, 29, 66, 14, 264, 2, 110, 135, 15, 11, 2576, 210, 203, 1352, 330, 1, 2, 11, 57, 496, 3, 52, 3128, 129, 1, 1, 57, 37, 610, 5, 2878, 31, 42, 30, 40, 43, 181, 1, 2, 1446, 2445, 21, &#10;43, 378, 2862, 1767, 65, 304, 170, 2, 13, 10, 7, 3219, 27, 87, 1157, 85, 6, 350, 83, 1409, 10, 190, 45, 9, 12, 21, 1293, 194, 1, 6, 1, 3518, 473, 1977, 27, 134, 325, 129, 3892, 1119, 30, 1163, 16, 95, 239, 1, 39, 422, 1, 1, 2, 30, 7, 787, 11, 6, 136, 10, 20, 29, 225, 1140, 51, 1, 17, 460, 19, 152, 1, 2, 10, 24, 6, 1, 3, 5, 1, 365, 19, 35, 4, 2, 6, 27, 48, 253, 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63, 57, 1, 1, 42, 836, 186, 163, 88, 6, 3, 142, 21, 37, 185, 2, 16, 126, 85, 74, 1, 1, 56, 172, 94, 7, 1, 2, 3, 6, 4, 1, 1, 9, 1, 24, 1, 8, 4, 18, 19, 30, &#10;1, 1, 49, 1, 1, 1, 3, 3, 1, 8, 1, 2, 3, 408, 3, 9, 2, 2, 37, 1, 3, 1, 15, 136, 1, 2, 7, 15, 86, 3, 6, 1, 10, 3, 1, 6, 4, 8, 1, 2, 1, 1, 7, 8, 24, 11, 46, 3, 1, 7, 1, 1, 72, 31, 320, 1, 1, 3, 2, 2, 1, 7, 1, 7, 1, 5, 3, 12, 2, 1, 10, 9, 82, 16, 26, 1, 128, 25, 6, 1, 2, 5, 1, 5, 3, 11, 1, 11, 2, 4, 9, 2, 10, 30, 22, 2, 6, 2, 2, 12, 2, 2, 3, 2, 1, 3, 62, 1, 1, 5, 20, 4, 2, 3, 2, 1, 3, 3, 1, 2, 1, 19, 2, 61, 5, 4, 66, 25, 1, 5, 22, 219, 11, 136, 1, 27, 80, 9, 21, 2, 22, 1, 26, 22, 2, 10, 2, 12, 2, 24, &#10;9, 4, 2, 1, 2, 3, 4, 10, 121, 30, 40, 1, 10, 5, 7, 3, 15, 5, 2, 1, 18, 6, 1, 4, 2, 1, 3, 14, 3, 10, 11, 50, 19, 28, 3, 16, 27, 1, 3, 2, 28, 2, 24, 18, 4, 10, 1, 10, 19, 3, 21, 1, 1, 108, 18, 9, 1, 1, 16, 6, 2, 2, 25, 207, 16, 6, 3, 1, 1, 1, 4, 8, 2, 29, 52, 1, 1, 17, 2, 80, 45, 1, 9, 3, 11, 10, 50, 29, 180, 95, 32, 2, 10, 32, 5, 3, 356, 1, 28, 3, 1, 3, 105, 3, 15, 1, 26, 13, 1, 15, 155, 2, 82, 18, 27, 3, 7, 1, 1, 3, 2, 2, 40, 5, 32, 10, 337, 20, 36, 42, 1, 1, 3, 3, 5, 3, 5, 1, 11, 1, 1, 1, 2, 1, &#10;2, 17, 27, 3, 1, 275, 1, 3, 7, 14, 2, 26, 5, 1, 1, 3, 1, 65, 1, 1, 1, 3, 85, 8, 2, 1, 1, 89, 1, 18, 2, 4, 1, 1, 1, 23, 12, 6, 6, 2, 3, 1, 3, 1, 44, 3, 1, 1, 1, 4, 11, 4, 77, 3, 2, 6, 1, 14, 1, 14, 5, 1, 1, 1, 4, 2, 1, 3, 3, 2, 2, 1, 1, 1, 2, 2, 2, 50, 7, 1, 1, 1, 7, 1, 3, 16, 1, 16, 1, 18, 2, 1, 2, 16, 10, 1, 26, 667, 51, 2165, 1, 64, 1, 36, 231, 744, 1686, 60, 1, 3, 30, 370, 178, 6, 19, 150, 1022, 5, 2145, 60, 74, 5, 628, 28, 116, 20, 2, 67, 2, 7, 23, 81, 517, 73, 85, 2, 430, 92, 11, 614, 8, 203, &#10;95, 3, 3, 17, 8, 1, 60, 8, 18, 3, 12, 8, 1, 47, 2, 151, 178, 2, 1, 2, 3, 23, 47, 8, 1, 2, 255, 1, 2, 1, 59, 18, 13, 7, 26, 2, 41, 35, 2, 1, 25, 2, 1, 4, 11, 2, 15, 8, 9, 2, 1, 20, 1, 1, 13, 1, 19, 1, 4, 47, 38, 11, 80, 47, 79, 141, 2, 18, 5, 38, 10, 1, 34, 2, 21, 1, 1, 1, 2, 20, 1, 4, 7, 6, 1, 1, 3, 10, 12, 1, 23, 28, 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{-}

Los valores obtenidos de taxonid pueden ser unidos a la columna taxonid de la tabla obtenida con samples(). Esto nos permite hacer tablas de armonización si así lo decidimos. También puedes notar que el nombre del taxón taxonname está en el campo variablename. Los recuentos de muestras individuales se reportan en Neotoma como variables. Una "variable" puede ser una especie, una medida en el laboratorio, un proxy no orgánico, como carbón o medias XRF, e incluye las unidades de medición y su valor.

Armonización simple {.tabset}

Supongamos que queremos todas las muestras en las que los taxones Plantago han sido reportados y se desea agruparlos bajo un pseudo-taxon llamado Plantago. Hay varias formas de hacer esto, ya sae directamente exportando el archivo y editando cada celda individualemnte o creando una tabla externa de armonización (lo que se hacía en el paquete anterior neotoma).

Programáticamente, podemos armonizar taxón por taxón aplicando comparaciones y transformaciones. Con la librería dplyr podemos utilizar mutate() para crear la columna variablename para que siempre que detecte (str_detect()) que el nombre de una variable variablename comienza con Plantago (el .* representa un comodín para cualquier caracter [.], cero o más veces [*]), podamos reemplazarlo replace() con el texto "Plantago". Hay que observar que se cambiará Plantago en el objeto allSamp, pero podemos reestaurar la información volviendo a llamarsamples() regresando las taxonomías a su forma original.

Vamos a filtar los grupos ecológicos para incluir unicamente UPHE (altiplanicie/brezo) and TRSH (árboles y arbustos). Para más información de los grupos ecológicos consultar el Manual en Línea Neotoma (Disponible sólo en inglés).

allSamp <- allSamp %>% 
  dplyr::filter(ecologicalgroup %in% c("UPHE", "TRSH")) %>%
  mutate(variablename = replace(variablename, 
                                stringr::str_detect(variablename, "Plantago.*"), 
                                "Plantago"))

Originalmente, había 15 taxones diferentes identificados con el género Plantago (incluyendo Plantago, Plantago major, y Plantago alpina-type). El código anterior reduce a todos a un único grupo taxonómico llamado Plantago.

Si quisieramos tener un artefacto con nuestras selecciones, podemos usar una tabla exteerna. Por ejemplo, una tabla de pares (información que queremos cambiar y el nombre con el que queremos reemplazar) puede ser creada y puede incluir expresiones regulares (regex) si así lo deseamos:

original	reemplazo
Abies.*	Abies
Vaccinium.*	Ericaceae
Typha.*	Aquatic
Nymphaea	Aquatic
...	...

Podemos obtener los nombres originales directamente de la función taxa(), aplicada a un objeto de tipo sites y exportarla con write.csv().

Código

taxaplots <- taxa(cz_dl)
# Save the taxon list to file so we can edit it subsequently.
readr::write_csv(taxaplots, "data/mytaxontable.csv")

Resultados

{-}

La gráfica es simplemente ilustrativa pero podemos verificar las relaciones existentes tal cual hubieramos esperado.

Puedes después exportar una de estas tablas y agregar una columna con los recuentos; también se puede agregar información contextual extra tal como el grupo ecológico o el grupo de taxones para ayudarte. Una vez qeu la tabla de transición ha sido limpiada, puedes usarla y aplicar las transformaciones:

translation <- readr::read_csv("data/taxontable.csv")

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(type 225, HdV)","Alisma","Alisma plantago-aquatica","Allium","Allium-type","Alnus","Alnus glutinosa","Alnus glutinosa-type","Alnus glutinosa/A. incana","Alnus undiff.","Alnus viridis","Alnus viridis-type","Alona rustica (type 72, HdV)","Amaranthaceae","Ambrosia","Ambrosia-type","Amphitrema","Amphitrema sp.","Amphitrema undiff.","Amphitrema wrightianum","Anagallis","Anagallis arvensis","Anagallis arvensis-type","Anagallis tenella-type","Anagallis-type","Anchusa/Pulmonaria","Andromeda","Andromeda polifolia","Androsace elongata-type","Androsace-type","Anemone","Anemone hepatica","Anemone nemorosa group","Anemone nemorosa-type","Anemone sect. Hepatica-type","Anemone sect. Pulsatilla","Anemone-type","Anthemis arvensis-type","Anthemis-type","Anthericum","Anthericum-type","Anthoceros","Anthoceros laevis","Anthoceros laevis-type","Anthoceros punctatus-type","Anthostomella cf. A. fuegiana (type 4, HdV)","Anthostomella fuegiana","Anthriscus caucalis","Anthriscus sylvestris","Anthriscus sylvestris-type","Anthriscus-type","Anthyllis","Aphanes","Apiaceae","Apiaceae undiff.","Apium","Apium inundatum-type","Apium-type","Araneae","Arcella","Arcella cf. A. megastoma","Arcella discoides","Arcella sp.","Archerella flavum","Archerella flavum (type 31A, HdV)","Arctium","Arctostaphylos uva-ursi","Arctostaphylos uva-ursi-type","Arctous alpina","Arenaria","Arenaria serpyllifolia-type","Armeria","Armeria maritima (type A)","Armeria maritima (type B)","Armeria maritima-type","Arnica montana","Artemisia","Arthrodesmus","Aruncus","Ascaris","Ascaris lumbricoides","Ascomycota","Ascospora","Aspiromitus punctatus","Asplenium","Asplenium-type","Assulina","Assulina muscorum","Assulina seminulum","Assulina sp.","Aster-type","Asteraceae","Asteroideae","Asteroideae undiff.","Asterosporium","Astragalus alpinus-type","Astragalus danicus-type","Astragalus exscapus","Astragalus-type","Astrantia major","Astrantia-type","Athyrium","Athyrium filix-femina","Athyrium-type","Avena-type","Avena/Triticum-type","Bambusa-type","Barbarea-type","Betula","Betula nana","Betula nana-type","Betula pubescens","Betula pubescens-type","Bidens","Bidens-type","Bistorta","Bistorta officinalis","Bistorta officinalis-type","Blechnum","Boraginaceae","Botrychium","Botryococcus","Botryococcus braunii","Botryococcus neglectus","Botryococcus pila","Botryococcus sp.","Brachysporium obovatum/B. bloxami/Bactrodesmium betulicola (type 359, HdV)","Brachysporium pendulisporum (type 360, HdV)","Brassica","Brassicaceae","Brassicaceae undiff.","Brassicaceae-type","Bruckenthalia-type","Bryales","Bryonia alba/Helianthemum","Bryophyta","Bryophyta (type 354, HdV)","Bupleurum","Bupleurum falcatum-type","Bupleurum-type","Butomus","Butomus umbellatus","Butomus-type","Byssothecium circinans","Byssothecium circinans (type 16A, HdV)","Byssothecium circinans (type 16B, HdV)","Byssothecium circinans (type 16C, HdV)","Calla","Callitriche","Calluna","Calluna vulgaris","Caltha","Caltha palustris-type","Caltha-type","Calystegia","Campanula","Campanula rapunculoides","Campanula-type","Campanula/Phyteuma","Campanulaceae","Cannabis sativa","Cannabis-type","Cardamine","Cardamine pratensis-type","Cardamine-type","Carduus","Carex","Carpinus","Carpinus betulus","Carpinus-type","Carum carvi","Carya","Caryophyllaceae","Caryophyllaceae undiff.","Caryospora sp. (type 1001, HdV)","Castanea","Castanea sativa","Castanea-type","Cedrus","Cedrus-type","Centaurea","Centaurea alpina-type","Centaurea cyanus","Centaurea cyanus-type","Centaurea jacea","Centaurea jacea-type","Centaurea jacea/C. stoebe","Centaurea montana-type","Centaurea nigra-type","Centaurea scabiosa","Centaurea scabiosa-type","Centaurea sp.","Centaurea stoebe","Centaurea stoebe-type","Centaurea undiff.","Centropyxis","Centropyxis aculeata","Cerastium","Cerastium arvense-type","Cerastium cerastoides-type","Cerastium fontanum-type","Cerastium-type","Ceratophyllum","Cercophora sp. (type 112, HdV)","Cerinthe","Cerinthe minor","cf. Actinopeltis (type 8C, HdV)","cf. Androsace","cf. Diphasiastrum-type","cf. Endophragmia (type 572, HdV)","cf. Entophlyctis lobata","cf. Helianthemum","cf. Lamiaceae","cf. Lobelia","cf. Papaver","cf. Pedicularis","cf. Penium","cf. Persiciospora (type 124, HdV)","cf. Riccia","cf. Richonia variospora (type 140, HdV)","cf. Spadicoides bina (type 98, HdV)","cf. Trichocladium opacum (type 10, HdV)","cf. Trichoglossum hirsutum (type 77B, HdV)","Chaerophyllum","Chaerophyllum hirsutum","Chaerophyllum hirsutum-type","Chaetomium sp. (type 7A, HdV)","Chaetomium undiff.","Chamaenerion","Chamaenerion angustifolium","Chamaenerion angustifolium-type","Charcoal","Chelidonium","Chelidonium majus","Chironomidae","Chlamydomonadaceae","Chrysophyceae","Chrysosplenium","Chrysosplenium-type","Cicatricosporites australiensis","Cichorioideae","Cicuta virosa","Circaea","Cirsium","Cirsium-type","Cirsium/Carduus","Cladium mariscus","Cladocera","Clasterosporium caricinum (type 126, HdV)","Clematis","Closterium","Closterium undiff.","Coelastrum reticulatum","Comarum","Comarum palustre","Comarum-type","Coniferae-type","Coniochaeta cf. C. ligniaria","Coniochaeta ligniaria (type 172, HdV)","Coniochaeta xylariispora","Consolida regalis","Consolida-type","Convallaria","Convolvulus","Convolvulus arvensis","Convolvulus-type","Copepoda","Cornus","Cornus mas","Cornus sanguinea","Cornus suecica","Coronilla undiff.","Corylus","Corylus avellana","Crataegus","Crataegus-type","Crupina","Cryptomeria","Cupressaceae","Cuscuta","Cuscuta epithymum","Cuscuta europaea-type","Cyperaceae","Cystopteris","Daphne","Daucus","Daucus carota","Daucus-type","Delitschia","Descurainia sophia","Desmidiaceae","Desmidiales","Dianthus","Dianthus-type","Difflugia","Digitalis purpurea-type","Dinoflagellata","Dinoflagellata undiff.","Diphasiastrum alpinum","Diphasiastrum alpinum-type","Diphasiastrum complanatum","Diporotheca","Dipsacoideae","Dipsacus","Drosera","Drosera intermedia","Drosera rotundifolia","Drosera rotundifolia-type","Dryas octopetala","Dryas-type","Dryopteris","Dryopteris carthusiana-type","Dryopteris dilatata-type","Dryopteris filix-mas-type","Dryopteris-type","Echinops","Echium","Echium vulgare","Echium-type","Elatine","Elymus-type","Empetrum","Empetrum nigrum-type","Empetrum-type","Encalypta-type","Engelhardia-type","Entophlyctis lobata","Entorrhiza sp. (type HdV-527)","Ephedra","Ephedra cf. E. distachya","Ephedra cf. E. foeminea","Ephedra cf. E. fragilis","Ephedra distachya","Ephedra distachya-type","Ephedra foeminea","Ephedra foeminea-type","Ephedra fragilis","Ephedra fragilis-type","Epilobium","Epilobium-type","Epipactis","Equisetaceae","Equisetum","Eranthis hyemalis-type","Erica ciliaris-type","Ericaceae","Ericaceae undiff.","Ericales","Ericales undiff.","Eriophorum","Erodium","Eryngium","Eryngium-type","Euglypha","Eunotia sp.","Euonymus","Euonymus europaeus","Euphorbia","Euphorbia-type","Euphorbiaceae","Euphrasia","Euphrasia-type","Fabaceae","Fabaceae undiff.","Faboideae","Fagopyrum","Fagopyrum esculentum","Fagopyrum-type","Fagus","Fagus sylvatica","Falcaria vulgaris","Falcaria-type","Fallopia convolvulus","Fallopia convolvulus-type","Fallopia convolvulus/F. dumetorum","Filinia longiseta","Filipendula","Filipendula ulmaria/F. vulgaris","Frangula","Frangula alnus","Fraxinus","Fraxinus excelsior","Fraxinus ornus","Fumaria-type","Fungi","Fungi (type 11, HdV)","Fungi (type 123, HdV)","Fungi (type 17, HdV)","Fungi (type 173, HdV)","Fungi (type 18, HdV)","Fungi (type 19, HdV)","Fungi (type 20, HdV)","Fungi (type 200, HdV)","Fungi (type 23, HdV)","Fungi (type 24, HdV)","Fungi (type 3A, HdV)","Fungi (type 404, HdV)","Fungi (type 408, HdV)","Fungi (type 47, HdV)","Fungi (type 53, HdV)","Fungi (type 54B, HdV)","Fungi (type 571, HdV)","Fungi (type 64, HdV)","Fungi (type 65, HdV)","Fungi (type 729, HdV)","Fungi (type 73, HdV)","Fungi (type 778. HdV)","Fungi (type 83, HdV)","Fungi (type 8A, HdV)","Fungi (type 8D, HdV)","Fungi (type 8E, HdV)","Fungi (type 90, HdV)","Fungi (type 96B, HdV)","Fungi undiff.","Fungi-type","Gaeumannomyces","Gaeumannomyces cf. G. caricis","Gaeumannomyces undiff.","Galeopsis","Galeopsis-type","Galeopsis/Ballota-type","Galium","Galium-type","Gelasinospora","Gelasinospora (type 1, HdV)","Gelasinospora (type 1A, HdV)","Gelasinospora (type 1B, HdV)","Gelasinospora reticulispora","Gelasinospora undiff.","Genista","Genista-type","Gentiana","Gentiana cruciata-type","Gentiana pneumonanthe-type","Gentiana undiff.","Gentiana-type","Gentianaceae","Gentianaceae undiff.","Gentianella","Gentianella campestris-type","Geoglossum sphagnophilum","Geoglossum sphagnophilum (type 77A, HdV)","Geoglossum sphagnophilum/Trichoglossum hirsutum (type 77A/77B, HdV)","Geraniaceae","Geranium","Geranium-type","Geum","Geum-type","Glaucium","Glaucium corniculatum","Glomus","Glomus cf. G. fasciculatum","Glyceria-type","Glyptotendipes pallens group (type 509, HdV)","Gnaphalium-type","Gratiola officinalis","Gymnocarpium dryopteris","Gypsophila","Gypsophila repens","Gypsophila repens-type","Gypsophila-type","Gyratrix hermaphroditus","Habrotrocha","Habrotrocha angusticollis","Habrotrocha angusticollis (type 37, HdV)","Hedera","Hedera helix","Hedysarum-type","Helianthemum","Helianthemum nummularium-type","Helianthemum oelandicum subsp. alpestris-type","Helicoma","Helicoön pluriseptatum","Helicosporium/Helicoön pluriseptatum (type 30, HdV)","Heliotropium europaeum","Helleborus","Heracleum","Heracleum sphondylium","Heracleum-type","Herniaria","Herniaria-type","Hippophaë","Hippophaë rhamnoides","Hippuris vulgaris","Hordeum","Hordeum-type","Hottonia palustris","Humulus","Humulus lupulus","Humulus/Cannabis","Humulus/Cannabis-type","Huperzia selago","Hyalosphenia papilio","Hyalosphenia subflava","Hydrocotyle","Hydrocotyle vulgaris","Hydrocotyle-type","Hydrodictyon","Hymenophyllum","Hyoscyamus","Hypericum","Hypericum perforatum-type","Hypericum perforatum/H. androsaemum-type","Hystrix","Ilex","Illecebrum verticillatum","Impatiens","Impatiens noli-tangere","Impatiens parviflora","Indeterminable","Indeterminable undiff.","Iris","Iris pseudacorus","Iris pseudacorus-type","Iris-type","Isoëtes","Isoëtes lacustris","Jasione","Jasione montana","Jasione-type","Juglandaceae","Juglandaceae-type","Juglans","Juncus sp. (type 2.2, MI)","Juniperus","Juniperus communis","Juniperus-type","Knautia","Knautia arvensis","Knautia arvensis-type","Koenigia alpina","Lamiaceae","Lamiaceae (tricolpate)","Lamium album-type","Lamium-type","Larix","Larix decidua","Larix-type","Larix/Pseudotsuga","Laserpitium","Laserpitium latifolium-type","Lasiosphaeria cf. L. caudata","Lasiosphaeria sp.","Lasiosphaeria sp. (type 63C, HdV)","Lasiosphaeria-type","Lathyrus-type","Lemna","Lemnoideae","Lepidoptera","Ligustrum","Liliaceae","Liliaceae-type","Linum","Linum austriacum-type","Linum catharticum","Linum catharticum-type","Linum flavum","Linum usitatissimum-type","Liquidambar","Listera ovata","Listera-type","Lithospermum officinale","Lobelia","Lonicera","Lonicera periclymenum","Lonicera xylosteum","Loranthus","Loranthus europaeus","Lotus","Lotus cf. L. corniculatus","Lotus pedunculatus","Lotus-type","Ludwigia palustris","Lycopodiaceae","Lycopodiaceae cf. Diphasiastrum complanatum","Lycopodiaceae undiff.","Lycopodiella inundata","Lycopodium","Lycopodium annotinum","Lycopodium annotinum-type","Lycopodium clavatum","Lycopodium clavatum-type","Lycopodium spike","Lycopodium tablets","Lycopodium undiff.","Lycopus","Lycopus-type","Lysimachia","Lysimachia cf. L. vulgaris","Lysimachia nemorum","Lysimachia nemorum-type","Lysimachia thyrsiflora","Lysimachia vulgaris","Lysimachia vulgaris-type","Lysimachia-type","Lythrum","Lythrum portula-type","Lythrum salicaria","Lythrum-type","Macrobiotus","Macrobiotus cf. M. echinogenitus","Magnolia-type","Maianthemum bifolium","Malus","Malus undiff.","Malus-type","Malva-type","Malvaceae","Marchantiophyta","Marrubium","Matricaria-type","Medicago falcata-type","Melampyrum","Melampyrum-type","Meliola","Mentha","Mentha-type","Menyanthes","Menyanthes trifoliata","Menyanthes trifoliata-type","Mercurialis","Mercurialis perennis-type","Micranthes stellaris","Micranthes stellaris-type","Microdalyellia armigera","Microrrhinum minus","Microthyriaceae","Microthyrium","Microthyrium microscopicum","Microthyrium undiff.","Microthyrium-type","Minuartia-type","Monactinus simplex","Monactinus simplex var. echinulatum","Monactinus simplex var. simplex","Monocotyledoneae","Montia","Mougeotia","Mougeotia cf. M. gracillima (type 61, HdV)","Mougeotia undiff.","Mougeotia-type","Muscari","Myosotis","Myosotis arvensis-type","Myrica-type","Myricaria germanica","Myriophyllum","Myriophyllum alterniflorum","Myriophyllum cf. M. spicatum","Myriophyllum cf. M. verticillatum","Myriophyllum heterophyllum","Myriophyllum spicatum","Myriophyllum spicatum-type","Myriophyllum undiff.","Myriophyllum verticillatum","Myriophyllum verticillatum-type","Nebela","Nebela parvula","Nebela undiff.","Neurospora","Normapolles","Nuphar","Nymphaea","Nymphaea alba","Nymphaea alba-type","Nymphaea cf. N. candida","Nymphaea undiff.","Nymphaeaceae","Nymphoides peltata-type","Nyssa","Odontites","Odontites-type","Oenanthe","Oenanthe-type","Oenothera","Olea","Oleaceae","Onagraceae","Onobrychis","Ononis","Ononis-type","Onopordum","Ophioglossum","Ophioglossum vulgatum","Orchidaceae","Oribatida (type 396, HdV)","Orlaya grandiflora","Ornithogalum umbellatum-type","Ornithogalum-type","Ostrya-type","Oxalis","Oxyria-type","Papaver","Papaver rhoeas-type","Papaver somniferum","Papaveraceae","Parapediastrum biradiatum","Parnassia","Parnassia palustris","Parnassia-type","Pediastrum","Pediastrum angulosum","Pediastrum angulosum var. angulosum","Pediastrum angulosum var. asperum","Pediastrum braunii","Pediastrum duplex","Pediastrum duplex var. duplex","Pediastrum duplex var. rugulosum","Pediastrum muticum var. scutum","Pediastrum orientale","Pediastrum undiff.","Pedicularis","Pedicularis palustris-type","Penium","Persicaria","Persicaria amphibia","Persicaria amphibia-type","Persicaria cf. P. lapathifolia","Persicaria lapathifolia","Persicaria maculosa","Persicaria maculosa-type","Petasites","Petasites hybridus-type","Petasites-type","Peucedanum","Peucedanum palustre-type","Peucedanum-type","Phegopteris","Phegopteris connectilis","Phragmites","Phragmites australis","Phragmites-type","Phyteuma","Phyteuma-type","Picea","Picea abies","Pilularia","Pimpinella anisum","Pimpinella major","Pimpinella major-type","Pimpinella major/P. saxifraga","Pinguicula","Pinnularia","Pinus","Pinus (Tertiary)","Pinus cembra","Pinus cembra-type","Pinus sp.","Pinus subg. Pinus","Pinus subg. Strobus-type","Pinus sylvestris","Pinus sylvestris-type","Pisum sativum","Plantaginaceae","Plantaginaceae undiff.","Plantago","Plantago alpina","Plantago alpina-type","Plantago atrata-type","Plantago coronopus","Plantago lanceolata","Plantago lanceolata-type","Plantago major","Plantago major-type","Plantago major/P. media","Plantago major/P. media-type","Plantago maritima-type","Plantago media","Plantago media-type","Plantago sp.","Platanus","Platycarya","Platyhelminthes (type 353A, HdV)","Platyhelminthes (type 353B, HdV)","Pleospora sp. (type 3B, HdV)","Pleospora undiff.","Pleurospermum","Pleurospermum austriacum","Pleurospermum austriacum-type","Poaceae","Poaceae (Cerealia-type excluding Secale)","Poaceae (Cerealia-type)","Poaceae (Cerealia)","Poaceae (Cerealia) excluding Secale","Poaceae (Cerealia) undiff.","Podocarpus-type","Podospora sp./Zopfiella sp. (type 466, HdV)","Podospora-type (type 368, HdV)","Polemonium","Polemonium caeruleum","Polygala","Polygonaceae","Polygonaceae undiff.","Polygonatum","Polygonum","Polygonum aviculare","Polygonum aviculare-type","Polygonum sp.","Polypodiaceae","Polypodiophyta (monolete, psilate)","Polypodiophyta (monolete, verrucate)","Polypodium","Polypodium vulgare","Populus","Porifera","Potamogeton","Potamogeton natans-type","Potamogeton-type","Potentilla","Potentilla-type","Potentilla/Comarum","Potentilla/Comarum-type","Potentilla/Fragaria","Poterium sanguisorba","Poterium sanguisorba subsp. sanguisorba","Primula","Primula clusiana-type","Primula farinosa-type","Primula veris-type","Primulaceae","Prunella-type","Prunus","Prunus sp.","Prunus-type","Pseudopediastrum boryanum","Pseudopediastrum boryanum var. boryanum","Pseudopediastrum boryanum var. boryanum sensu lato","Pseudopediastrum boryanum var. cornutum","Pseudopediastrum boryanum var. longicorne","Pseudopediastrum brevicorne","Pseudopediastrum integrum","Pseudopediastrum kawraiskyi","Pteridium","Pteridium aquilinum","Pteridophyta","Pteridophyta (monolete, verrucate)","Pteridophyta (monolete) undiff.","Pterocarya","Pterocarya fraxinifolia","Pulmonaria","Pulmonaria-type","Pyrola","Pyxidicula","Quercus","Quercus coccifera","Quercus pubescens","Ranunculaceae","Ranunculaceae undiff.","Ranunculus","Ranunculus acris-type","Ranunculus acris/R. flammula/R. sceleratus group","Ranunculus aquatilis-type","Ranunculus arvensis","Ranunculus arvensis-type","Ranunculus flammula-type","Ranunculus sect. Batrachium","Ranunculus sect. Batrachium-type","Ranunculus-type","Reseda","Reseda lutea-type","Rhabdocoela","Rhabdocoela (type 353, HdV)","Rhamnaceae","Rhamnus","Rhinanthus","Rhinanthus-type","Rhinanthus/Veronica","Rhizopoda","Rhizopoda undiff.","Rhododendron","Rhododendron subsect. Ledum","Rhododendron tomentosum","Rhus-type","Ribes","Ribes alpinum","Ribes uva-crispa","Riccia","Rivularia","Rosa","Rosa-type","Rosaceae","Rosaceae undiff.","Rotifera undiff.","Rotifera/Tardigrada","Rubiaceae","Rubus","Rubus chamaemorus","Rumex","Rumex acetosa","Rumex acetosa-type","Rumex acetosa/R. acetosella","Rumex acetosella","Rumex acetosella-type","Rumex aquaticus-type","Rumex cf. R. alpinus","Rumex maritimus-type","Rumex obtusifolius","Rumex obtusifolius-type","Rumex subg. Rumex","Rumex undiff.","Rumex-type","Rumex/Oxyria-type","Sagina","Sagina procumbens-type","Sagina-type","Sagittaria","Sagittaria-type","Salix","Salix herbacea-type","Salvia","Sambucus","Sambucus cf. S. ebulus","Sambucus cf. S. nigra","Sambucus cf. S. racemosa","Sambucus ebulus","Sambucus nigra","Sambucus nigra-type","Sambucus nigra/S. racemosa","Sambucus racemosa","Samolus valerandi","Sample quantity","Sanguisorba minor-type","Sanguisorba officinalis","Sanicula europaea","Sanicula-type","Saussurea-type","Saxifraga","Saxifraga aizoides-type","Saxifraga granulata","Saxifraga granulata-type","Saxifraga hirculus-type","Saxifraga oppositifolia","Saxifraga oppositifolia-type","Saxifraga undiff.","Saxifragaceae","Saxifragaceae undiff.","Scabiosa","Scabiosa columbaria subsp. pratensis-type","Scabiosa columbaria-type","Scandix pecten-veneris/Caucalis platycarpos","Scenedesmus","Scenedesmus undiff.","Scheuchzeria","Scheuchzeria palustris","Sciadopitys","Sciadopitys-type","Scilla-type","Scleranthus","Scleranthus annuus","Scleranthus annuus-type","Scleranthus cf. S. annuus","Scleranthus cf. S. perennis","Scleranthus perennis","Scleranthus perennis-type","Scleranthus-type","Scrophularia","Scrophularia-type","Scrophulariaceae","Scutellaria","Secale","Secale cereale","Secale-type","Securigera varia","Sedum","Sedum-type","Selaginella","Selaginella selaginoides","Selaginellaceae","Senecio","Senecio-type","Senecio/Aster","Sequoia","Serratula","Serratula-type","Seseli-type","Sigmopollis","Silene","Silene dioica-type","Silene flos-cuculi","Silene latifolia","Silene viscaria-type","Silene vulgaris","Silene vulgaris-type","Silene-type","Silene-type undiff.","Sileneae","Silenoideae-type","Sinapis-type","Sium latifolium-type","Solanaceae","Solanum","Solanum cf. S. nigrum","Solanum dulcamara","Solanum nigrum","Solanum nigrum-type","Soldanella","Sorbus","Sorbus aria-type","Sorbus aucuparia","Sorbus group","Sorbus torminalis","Sorbus-type","Sordaria-type (type 55A, HdV)","Sordariaceae","Sordariaceae/Sordaria (type 55B, HdV)","Sparganium","Sparganium erectum","Sparganium-type","Spergula","Spergula-type","Spergularia-type","Sphagnum","Spirogyra","Spirogyra cf. S. scrobiculata","Spirogyra-type","Sporormiella","Sporormiella (type 113, HdV)","Stachys","Stachys-type","Staurastrum","Staurastrum undiff.","Stauridium tetras","Stellaria","Stellaria holostea","Stellaria-type","Stratiotes aloides","Succisa","Succisa pratensis","Succisa-type","Succisella","Swertia perennis","Symphytum","Symphytum cf. S. officinale","Symphytum-type","Symplocos","Tardigrada","Tardigrada (type 902, HdV)","Tardigrada undiff.","Taxus","Taxus baccata","Tetraëdron","Tetraëdron minimum","Tetraploa scheueri","Teucrium","Thalictrum","Thalictrum-type","Thecaphora","Thelypteris","Thelypteris palustris","Thesium","Thesium-type","Tilia","Tilia cordata","Tilia platyphyllos","Tilia undiff.","Tilletia sphagni","Tilletia sphagni (type 27, HdV)","Tofieldia","Transeauina","Transeauina (type 214, HdV)","Transeauina undiff.","Trapa","Trapa natans","Trichocladium opacum (type 10, HdV)","Trichuris trichiura","Trientalis","Trientalis europaea","Trifolium","Trifolium pratense","Trifolium pratense-type","Trifolium repens-type","Trifolium-type","Triglochin","Triticum","Triticum-type","Trochiscia undiff.","Trollius","Trollius europaeus","Trollius-type","Tsuga","Tsuga diversifolia-type","Tsuga-type","Turgenia latifolia","Typha","Typha angustifolia","Typha angustifolia-type","Typha angustifolia/Sparganium","Typha angustifolia/Sparganium-type","Typha latifolia","Typha latifolia-type","Typhaceae","Ulex-type","Ulmus","Ulmus/Zelkova","Umbilicus rupestris-type","Unknown","Unknown (Cretaceous)","Unknown (monolete, psilate)","Unknown (monolete)","Unknown (monolete) undiff.","Unknown (pre-Quaternary)","Unknown (Tertiary)","Unknown (trilete)","Unknown (trilete) undiff.","Unknown (type 160, HdV)","Unknown (type 181, HdV)","Unknown (type 224, HdV)","Unknown (type 33, HdV)","Unknown (type 366, HdV)","Unknown (type 38, HdV)","Unknown (type 41, HdV)","Unknown (type 708, HdV)","Unknown (type 74, HdV)","Unknown (type 86, HdV)","Unknown (type 91, HdV)","Urtica","Ustulina deusta","Ustulina deusta (type 44, HdV)","Utricularia","Vaccinioideae","Vaccinium","Vaccinium oxycoccos","Vaccinium-type","Valeriana","Valeriana cf. V. dioica","Valeriana cf. V. officinalis","Valeriana dioica","Valeriana dioica-type","Valeriana officinalis","Valeriana officinalis-type","Valerianella","Varia","Veratrum","Veratrum album","Veratrum-type","Verbascum","Vermes","Veronica","Veronica beccabunga","Veronica beccabunga-type","Veronica-type","Viburnum","Viburnum cf. V. opulus","Viburnum lantana","Viburnum opulus","Viburnum opulus-type","Viburnum undiff.","Vicia","Vicia cracca-type","Vicia-type","Vicia/Lathyrus","Vicia/Lathyrus-type","Viola","Viola canina-type","Viola palustris","Viola palustris-type","Viola tricolor","Viscum","Vitis","Vitis vinifera","Xanthium","Xanthium-type","Xylariaceae","Xylomyces chlamydosporis/X. aquaticus (type 201, HdV)","Zea mays","Zygnema","Zygnema-type","Zygnemataceae","Zygnemataceae undiff."],[1,72,23,1,78,1,15,11,1,1,2,2,1,2,1,1,1,2,1,1,10,2,5,4,7,1,1,13,1,3,4,79,1,5,1,1,8,1,1,85,5,5,5,1,1,5,2,1,2,1,1,1,1,1,2,1,1,1,1,15,1,5,19,1,13,3,1,5,5,1,1,1,1,1,1,4,1,2,1,70,15,1,1,1,1,14,1,2,2,20,1,1,1,1,1,6,1,4,2,2,1,1,87,1,1,3,1,4,1,13,1,1,6,7,3,2,9,13,65,2,1,1,3,1,6,1,4,2,6,1,23,1,1,17,83,8,1,1,2,12,3,3,23,25,2,12,44,22,11,3,3,3,1,1,1,65,1,6,1,40,1,10,2,5,1,5,6,1,1,3,1,1,3,1,2,27,57,4,1,45,7,45,1,7,1,5,7,11,2,13,19,12,1,65,26,1,1,4,28,1,1,4,1,3,1,1,11,1,62,7,11,31,1,1,2,22,7,1,1,2,7,1,1,3,6,6,1,5,6,1,2,1,1,1,1,2,3,1,1,1,1,2,1,1,1,2,1,1,1,1,2,6,1,1,6,12,1,9,3,1,2,1,1,20,4,1,81,2,9,12,41,4,2,1,1,1,2,1,5,18,2,4,1,2,1,2,1,6,1,7,9,1,8,8,10,17,1,1,68,26,1,2,1,1,2,8,1,2,84,1,3,1,1,11,1,1,3,1,3,4,1,1,4,1,1,1,1,8,3,3,15,1,6,1,3,1,2,1,2,4,20,1,18,2,2,7,1,3,1,6,1,2,8,1,6,1,3,1,10,9,1,3,4,10,42,3,1,1,74,1,1,21,7,3,1,1,4,2,1,8,1,12,1,13,1,1,2,2,51,1,3,23,1,4,75,11,1,1,3,3,1,1,81,1,27,38,68,14,1,1,6,1,1,2,1,3,2,2,2,2,1,4,1,1,1,1,1,2,1,1,1,2,1,3,3,1,3,4,1,3,1,4,6,1,1,2,1,14,31,6,1,1,1,1,1,1,7,10,1,5,1,3,6,1,2,4,2,2,1,1,32,1,11,10,2,1,2,1,5,1,11,1,8,5,1,4,4,6,1,14,1,24,26,1,42,1,1,3,8,1,1,1,6,2,6,1,2,7,10,2,1,7,1,7,5,32,6,7,1,5,1,1,1,1,1,1,27,3,1,2,2,1,10,1,1,1,1,2,1,2,3,1,1,5,8,1,2,1,57,1,56,1,1,21,2,3,1,40,1,1,21,30,2,1,1,1,1,1,1,1,1,11,4,1,1,5,25,2,3,2,12,1,1,3,1,1,2,1,2,13,2,3,8,2,1,1,4,32,1,12,1,2,4,4,56,5,44,3,8,5,1,9,11,30,1,1,1,1,7,19,9,19,3,9,1,1,1,1,1,2,1,1,1,6,3,1,1,1,54,1,1,7,24,7,33,2,8,2,2,5,6,1,7,32,4,2,1,4,4,2,2,8,4,12,1,2,1,1,3,1,1,1,2,17,1,1,3,24,1,2,16,6,5,1,1,1,1,15,14,2,1,1,1,5,1,2,2,3,4,1,1,2,1,1,4,1,1,1,13,2,2,1,1,1,1,1,9,2,6,2,1,10,1,4,16,1,9,5,3,2,1,10,1,8,2,1,3,19,1,1,1,8,2,1,1,13,27,3,1,13,1,1,12,2,1,2,2,5,6,1,74,23,1,1,1,12,1,3,1,77,1,6,3,1,3,1,3,2,4,3,1,3,6,3,1,2,68,18,20,13,48,8,3,17,3,2,1,1,1,2,1,1,2,13,1,86,2,16,14,1,20,1,1,1,9,5,6,3,1,2,1,56,8,3,42,1,1,15,30,44,1,36,1,12,9,27,9,11,1,12,2,4,1,1,4,2,1,6,1,13,13,5,5,8,9,3,11,6,22,46,3,2,5,3,1,1,6,1,1,85,2,1,57,4,1,20,1,1,4,1,1,13,4,31,1,1,3,1,1,11,9,2,1,4,5,1,3,4,1,16,1,1,3,1,6,1,65,3,1,1,56,12,1,36,10,41,1,20,9,1,1,1,3,4,2,4,2,1,3,1,2,4,1,86,2,1,13,1,6,4,5,18,10,1,12,1,6,1,50,1,1,1,3,2,1,3,1,1,4,2,13,1,9,1,1,1,11,2,6,6,2,1,1,4,3,2,1,1,1,1,5,3,3,14,1,35,32,16,1,13,2,3,19,1,1,12,1,1,1,1,1,1,3,8,8,1,1,1,8,23,1,28,12,1,1,1,1,1,9,1,6,1,24,1,2,1,2,8,3,1,1,12,2,8,2,1,1,77,7,1,3,2,1,5,4,6,1,2,2,3,2,3,15,8,1,1,2,21,1,2,1,2,1,1,1,2,7,9,1,3,75,3,4,1,7,4,1,79,9,10,4,12,1,1,1,1,3,1,3,2,2,1,2,6,6,22,11,22,3,27,27,1,5,11,1,4,1,1,1,1,8,1,33,10,41,13,1,1,85,1,1,24,1,2,14,5,2,5,1,7,1,1,1,2,1,2,2,1,1,2,2,71,5,1,17,11,22,5,37,30,1,3,1,8,20,8,2,57,5,1,2,9,1,9,1,2,4,10,1,2,5,1,1,1,1,24,1,1,13,1,5,5,1,47,9,2,3,1,1,3,5,3,5,3,1],[15,1822,836,1,1157,1,216,76,3,1,3,7,1,2,3,5,5,3,1,1,29,10,23,56,18,1,1,51,8,46,6,3219,20,172,94,130,190,5,1,1977,6,26,119,2,1,18,3,2,7,1,1,1,1,3,11,1,2,1,1,108,1,13,89,16,331,6,4,17,12,1,1,5,1,1,8,24,1,4,1,1767,331,1,1,30,1,79,2,6,5,190,26,1,5,1,1,8,1,11,3,3,1,2,3419,4,1,13,2,53,7,38,1,1,30,189,51,31,152,134,1119,43,1,1,8,2,15,1,8,36,20,1,325,2,2,186,3727,177,42,29,80,83,3,10,121,139,2,37,231,475,148,7,18,21,2,1,30,1163,22,153,5,614,27,203,4,11,2,8,37,1,2,20,3,1,38,3,11,356,895,25,1,365,14,239,3,19,3,10,95,180,46,163,151,44,7,1148,620,130,1,37,288,30,1,18,1,15,2,1,35,3,432,35,57,136,14,1,2,74,14,2,3,7,13,2,1,12,18,27,7,29,130,12,3,1,12,2,1,18,47,1,19,1,10,10,2,1,2,15,1,49,98,1,5,45,7,1,42,28,2,867,6,2,4,2,1,88,24,1,1869,11,13,52,416,49,7,5,37,3,3,2,50,337,20,36,8,103,9,56,2,32,1,22,46,1,64,9,72,50,1,1,2273,1107,1,7,1,3,11,64,10,31,3751,2,8,1,1,320,1,1,48,1,3,25,2,1,88,9,30,7,2,68,4,5,20,5,16,4,15,1,67,2,2,8,744,2,40,3,2,13,2,5,89,50,1,19,59,3,21,7,7,1,35,30,1,6,25,37,150,9,1,1,1686,1,2,202,44,207,118,1,5,31,1,66,1,28,5,18,5,3,2,3,350,5,5,46,3,12,2328,438,1,3,3,3,9,22,2359,18,188,327,1293,484,1,2,116,3,2,11,1,47,4,4,30,5,52,80,1,4,1,34,5,2,52,1,7,11,1,79,46,21,51,141,30,60,8,55,131,12,2,2,4,218,572,19,13,10,2,5,1,2,19,39,1,8,9,3,15,1,2,10,16,21,3,2,79,9,23,31,7,1,13,19,21,2,82,1,47,16,1,26,40,66,8,251,34,49,128,2,308,3,1,17,196,20,9,1,40,6,25,1,2,20,43,3,3,74,5,16,80,497,40,19,2,12,1,5,1,1,3,6,143,50,23,9,15,1,17,5,12,26,51,3,1,3,11,1,2,8,11,2,13,6,194,1,862,4,12,33,5,6,2,422,17,2,85,99,3,10,1,2,1,63,2,2,8,14,17,12,1,27,85,4,6,2,22,2,2,6,3,1,12,2,2,29,2,3,18,2,6,1,18,162,3,95,2,3,6,8,370,23,178,11,679,525,1,27,66,152,1,3,1,1,21,142,62,87,5,48,20,2,2,3,4,2,1,3,2,14,8,1,20,3,445,2,2,39,253,32,264,3,14,3,15,14,140,1,78,246,18,32,7,7,29,32,47,41,6,188,4,2,1,1,3,2,6,1,2,87,19,2,44,225,1,2,126,112,8,1,1,1,1,110,135,62,5,61,3,86,1,15,4,66,16,1,1,5,1,1,25,1,1,3,28,3,2,2,1,1,5,1,13,15,14,3,4,26,1,11,37,1,58,36,69,2,4,165,1,211,4,37,41,30,1,2,2,11,5,1,1,38,69,52,2,185,16,25,207,2,1,22,11,219,11,4,2610,1005,2,1,11,136,4,4,2,3548,1,85,9,15,210,27,99,80,21,12,27,7,26,22,1,2,1352,203,203,119,452,50,12,330,6,3,1,1,23,93,2,42,2,22,2,3892,77,148,129,26,239,3,6,1,15,10,7,5,2,2,1,402,57,26,1022,35,2,430,151,473,1,460,3,163,132,496,105,85,6,14,5,11,1,2,12,3,1,19,1,52,208,58,211,150,253,6,297,36,85,517,81,8,255,12,2,1,9,1,2,3128,24,14,1409,129,24,445,16,3,4,16,9,155,17,417,2,1,71,10,1,39,51,5,6,26,31,1,12,30,3,57,2,1,3,7,24,3,787,45,6,1,1248,37,7,610,86,874,29,252,172,3,1,1,6,12,2,35,3,1,4,1,2,5,1,2878,20,1,31,1,40,10,10,121,63,4,30,1,368,5,183,1,1,1,6,2,5,7,3,2,11,2,42,3,12,2,1,1,225,7,32,30,18,3,1,10,6,3,2,2,2,1,11,8,7,40,3,467,408,136,1,43,2,5,73,1,1,38,10,4,4,1,1,2,7,18,65,1,1,1,19,126,1,275,82,2,2,2,1,1,57,3,14,1,81,2,7,2,2,80,8,26,2,111,19,181,8,1,1,2145,81,3,5,35,10,12,10,38,1,14,10,6,4,3,40,9,2,1,2,43,7,4,1,13,1,3,2,10,137,138,2,16,1446,4,18,3,60,11,1,2445,144,106,50,92,28,1,1,1,8,3,28,14,6,1,3,13,20,85,29,178,12,291,225,5,16,27,1,21,1,7,1,2,42,2,358,50,378,254,1,1,2862,3,3,741,6,178,628,150,25,153,5,60,5,4,4,19,6,2,17,8,2,2,9,1140,94,23,65,95,304,37,362,170,2,16,2,24,96,28,6,2165,9,1,18,18,1,42,8,4,23,27,1,4,29,4,2,10,1,115,11,3,27,1,10,10,1,164,13,3,10,26,4,17,7,20,25,22,40],["Other","Abies","Abies","Acacia","Acer","Achillea","Achillea","Aconitum","Aconitum","Other","Actaea","Other","Other","Other","Adonis","Adonis","Adonis","Aesculus","Other","Agrimonia","Agrostemma githago","Ailanthus","Alchemilla","Alchemilla","Algae","Algae","Algae","Alisma","Alisma","Allium","Allium","Alnus","Alnus","Alnus","Alnus","Alnus","Alnus","Alnus","Other","Amaranthaceae","Ambrosia","Ambrosia","Amphitrema","Amphitrema","Amphitrema","Amphitrema","Anagallis","Anagallis","Anagallis","Anagallis","Anagallis","Other","Other","Other","Other","Other","Anemone","Anemone","Anemone","Anemone","Anemone","Anemone","Anemone","Anthemis","Anthemis","Anthericum","Anthericum","Anthoceros","Anthoceros","Anthoceros","Anthoceros","Fungi","Fungi","Anthriscus caucalis","Anthriscus sylvestris","Anthriscus sylvestris-type","Anthriscus-type","Anthyllis","Aphanes","Apiaceae","Apiaceae undiff.","Apium","Apium inundatum-type","Apium-type","Araneae","Arcella","Arcella cf. A. megastoma","Arcella discoides","Arcella sp.","Fungi","Fungi","Arctium","Arctostaphylos uva-ursi","Arctostaphylos uva-ursi-type","Arctous alpina","Arenaria","Arenaria serpyllifolia-type","Armeria","Armeria","Armeria","Armeria","Arnica montana","Artemisia","Arthrodesmus","Aruncus","Ascaris","Ascaris lumbricoides","Ascomycota","Ascospora","Aspiromitus punctatus","Asplenium","Asplenium-type","Assulina","Assulina muscorum","Assulina seminulum","Assulina sp.","Aster-type","Asteraceae","Asteroideae","Asteroideae undiff.","Asterosporium","Astragalus alpinus-type","Astragalus danicus-type","Astragalus exscapus","Astragalus-type","Astrantia major","Astrantia-type","Athyrium","Athyrium filix-femina","Athyrium-type","Avena-type","Avena/Triticum-type","Bambusa-type","Barbarea-type","Betula","Betula","Betula","Betula","Betula","Bidens","Bidens-type","Bistorta","Bistorta officinalis","Bistorta officinalis-type","Blechnum","Boraginaceae","Botrychium","Botryococcus","Botryococcus braunii","Botryococcus neglectus","Botryococcus pila","Botryococcus sp.","Brachysporium obovatum/B. bloxami/Bactrodesmium betulicola (type 359, HdV)","Brachysporium pendulisporum (type 360, HdV)","Brassica","Brassicaceae","Brassicaceae undiff.","Brassicaceae-type","Bruckenthalia-type","Bryales","Bryonia alba/Helianthemum","Bryophyta","Bryophyta (type 354, HdV)","Bupleurum","Bupleurum falcatum-type","Bupleurum-type","Butomus","Butomus umbellatus","Butomus-type","Byssothecium circinans","Byssothecium circinans (type 16A, HdV)","Byssothecium circinans (type 16B, HdV)","Byssothecium circinans (type 16C, HdV)","Calla","Callitriche","Calluna","Calluna vulgaris","Caltha","Caltha palustris-type","Caltha-type","Calystegia","Campanula","Campanula rapunculoides","Campanula-type","Campanula/Phyteuma","Campanulaceae","Cannabis sativa","Cannabis-type","Cardamine","Cardamine pratensis-type","Cardamine-type","Carduus","Carex","Carpinus","Carpinus","Carpinus","Carum carvi","Carya","Caryophyllaceae","Caryophyllaceae undiff.","Caryospora sp. (type 1001, HdV)","Castanea","Castanea sativa","Castanea-type","Cedrus","Cedrus-type","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centaurea","Centropyxis","Centropyxis aculeata","Cerastium","Cerastium arvense-type","Cerastium cerastoides-type","Cerastium fontanum-type","Cerastium-type","Ceratophyllum","Cercophora sp. (type 112, HdV)","Cerinthe","Cerinthe minor","cf. Actinopeltis (type 8C, HdV)","cf. Androsace","cf. Diphasiastrum-type","cf. Endophragmia (type 572, HdV)","cf. Entophlyctis lobata","cf. Helianthemum","cf. Lamiaceae","cf. Lobelia","cf. Papaver","cf. Pedicularis","cf. Penium","cf. Persiciospora (type 124, HdV)","cf. Riccia","cf. Richonia variospora (type 140, HdV)","cf. Spadicoides bina (type 98, HdV)","cf. Trichocladium opacum (type 10, HdV)","cf. Trichoglossum hirsutum (type 77B, HdV)","Chaerophyllum","Chaerophyllum hirsutum","Chaerophyllum hirsutum-type","Chaetomium sp. (type 7A, HdV)","Chaetomium undiff.","Chamaenerion","Chamaenerion angustifolium","Chamaenerion angustifolium-type","Charcoal","Chelidonium","Chelidonium majus","Chironomidae","Chlamydomonadaceae","Chrysophyceae","Chrysosplenium","Chrysosplenium-type","Cicatricosporites australiensis","Cichorioideae","Cicuta virosa","Circaea","Cirsium","Cirsium-type","Cirsium/Carduus","Cladium mariscus","Cladocera","Clasterosporium caricinum (type 126, HdV)","Clematis","Closterium","Closterium undiff.","Coelastrum reticulatum","Comarum","Comarum palustre","Comarum-type","Coniferae-type","Coniochaeta cf. C. ligniaria","Coniochaeta ligniaria (type 172, HdV)","Coniochaeta xylariispora","Consolida regalis","Consolida-type","Convallaria","Convolvulus","Convolvulus arvensis","Convolvulus-type","Copepoda","Cornus","Cornus","Cornus","Cornus","Coronilla undiff.","Corylus","Corylus avellana","Crataegus","Crataegus-type","Crupina","Cryptomeria","Cupressaceae","Cuscuta","Cuscuta epithymum","Cuscuta europaea-type","Cyperaceae","Cystopteris","Daphne","Daucus","Daucus carota","Daucus-type","Delitschia","Descurainia sophia","Desmidiaceae","Desmidiales","Dianthus","Dianthus-type","Difflugia","Digitalis purpurea-type","Dinoflagellata","Dinoflagellata undiff.","Diphasiastrum alpinum","Diphasiastrum alpinum-type","Diphasiastrum complanatum","Diporotheca","Dipsacoideae","Dipsacus","Drosera","Drosera intermedia","Drosera rotundifolia","Drosera rotundifolia-type","Dryas octopetala","Dryas-type","Dryopteris","Dryopteris carthusiana-type","Dryopteris dilatata-type","Dryopteris filix-mas-type","Dryopteris-type","Echinops","Echium","Echium vulgare","Echium-type","Elatine","Elymus-type","Empetrum","Empetrum nigrum-type","Empetrum-type","Encalypta-type","Engelhardia-type","Entophlyctis lobata","Entorrhiza sp. (type HdV-527)","Ephedra","Ephedra cf. E. distachya","Ephedra cf. E. foeminea","Ephedra cf. E. fragilis","Ephedra distachya","Ephedra distachya-type","Ephedra foeminea","Ephedra foeminea-type","Ephedra fragilis","Ephedra fragilis-type","Epilobium","Epilobium-type","Epipactis","Equisetaceae","Equisetum","Eranthis hyemalis-type","Erica ciliaris-type","Ericaceae","Ericaceae undiff.","Ericales","Ericales undiff.","Eriophorum","Erodium","Eryngium","Eryngium-type","Euglypha","Eunotia sp.","Euonymus","Euonymus europaeus","Euphorbia","Euphorbia-type","Euphorbiaceae","Euphrasia","Euphrasia-type","Fabaceae","Fabaceae undiff.","Faboideae","Fagopyrum","Fagopyrum esculentum","Fagopyrum-type","Fagus","Fagus sylvatica","Falcaria vulgaris","Falcaria-type","Fallopia convolvulus","Fallopia convolvulus-type","Fallopia convolvulus/F. dumetorum","Filinia longiseta","Filipendula","Filipendula ulmaria/F. vulgaris","Frangula","Frangula alnus","Fraxinus","Fraxinus excelsior","Fraxinus ornus","Fumaria-type","Fungi","Fungi (type 11, HdV)","Fungi (type 123, HdV)","Fungi (type 17, HdV)","Fungi","Fungi (type 18, HdV)","Fungi (type 19, HdV)","Fungi (type 20, HdV)","Fungi (type 200, HdV)","Fungi (type 23, HdV)","Fungi (type 24, HdV)","Fungi (type 3A, HdV)","Fungi","Fungi (type 408, HdV)","Fungi","Fungi (type 53, HdV)","Fungi (type 54B, HdV)","Fungi (type 571, HdV)","Fungi (type 64, HdV)","Fungi","Fungi (type 729, HdV)","Fungi (type 73, HdV)","Fungi","Fungi (type 83, HdV)","Fungi (type 8A, HdV)","Fungi (type 8D, HdV)","Fungi (type 8E, HdV)","Fungi (type 90, HdV)","Fungi (type 96B, HdV)","Fungi undiff.","Fungi-type","Gaeumannomyces","Gaeumannomyces cf. G. caricis","Gaeumannomyces undiff.","Galeopsis","Galeopsis-type","Galeopsis/Ballota-type","Galium","Galium-type","Gelasinospora","Gelasinospora (type 1, HdV)","Gelasinospora (type 1A, HdV)","Gelasinospora (type 1B, HdV)","Gelasinospora reticulispora","Gelasinospora undiff.","Genista","Genista-type","Gentiana","Gentiana cruciata-type","Gentiana pneumonanthe-type","Gentiana undiff.","Gentiana-type","Gentianaceae","Gentianaceae undiff.","Gentianella","Gentianella campestris-type","Geoglossum sphagnophilum","Geoglossum sphagnophilum (type 77A, HdV)","Geoglossum sphagnophilum/Trichoglossum hirsutum (type 77A/77B, HdV)","Geraniaceae","Geranium","Geranium-type","Geum","Geum-type","Glaucium","Glaucium corniculatum","Glomus","Glomus cf. G. fasciculatum","Glyceria-type","Glyptotendipes pallens group (type 509, HdV)","Gnaphalium-type","Gratiola officinalis","Gymnocarpium dryopteris","Gypsophila","Gypsophila repens","Gypsophila repens-type","Gypsophila-type","Gyratrix hermaphroditus","Habrotrocha","Habrotrocha angusticollis","Habrotrocha angusticollis (type 37, HdV)","Hedera","Hedera helix","Hedysarum-type","Helianthemum","Helianthemum nummularium-type","Helianthemum oelandicum subsp. alpestris-type","Helicoma","Helicoön pluriseptatum","Helicosporium/Helicoön pluriseptatum (type 30, HdV)","Heliotropium europaeum","Helleborus","Heracleum","Heracleum sphondylium","Heracleum-type","Herniaria","Herniaria-type","Hippophaë","Hippophaë rhamnoides","Hippuris vulgaris","Hordeum","Hordeum-type","Hottonia palustris","Humulus","Humulus lupulus","Humulus/Cannabis","Humulus/Cannabis-type","Huperzia selago","Hyalosphenia papilio","Hyalosphenia subflava","Hydrocotyle","Hydrocotyle vulgaris","Hydrocotyle-type","Hydrodictyon","Hymenophyllum","Hyoscyamus","Hypericum","Hypericum perforatum-type","Hypericum perforatum/H. androsaemum-type","Hystrix","Ilex","Illecebrum verticillatum","Impatiens","Impatiens noli-tangere","Impatiens parviflora","Indeterminable","Indeterminable undiff.","Iris","Iris pseudacorus","Iris pseudacorus-type","Iris-type","Isoëtes","Isoëtes lacustris","Jasione","Jasione montana","Jasione-type","Juglandaceae","Juglandaceae-type","Juglans","Juncus sp. (type 2.2, MI)","Juniperus","Juniperus communis","Juniperus-type","Knautia","Knautia arvensis","Knautia arvensis-type","Koenigia alpina","Lamiaceae","Lamiaceae (tricolpate)","Lamium album-type","Lamium-type","Larix","Larix decidua","Larix-type","Larix/Pseudotsuga","Laserpitium","Laserpitium latifolium-type","Lasiosphaeria cf. L. caudata","Lasiosphaeria sp.","Lasiosphaeria sp. (type 63C, HdV)","Lasiosphaeria-type","Lathyrus-type","Lemna","Lemnoideae","Lepidoptera","Ligustrum","Liliaceae","Liliaceae-type","Linum","Linum austriacum-type","Linum catharticum","Linum catharticum-type","Linum flavum","Linum usitatissimum-type","Liquidambar","Listera ovata","Listera-type","Lithospermum officinale","Lobelia","Lonicera","Lonicera periclymenum","Lonicera xylosteum","Loranthus","Loranthus europaeus","Lotus","Lotus cf. L. corniculatus","Lotus pedunculatus","Lotus-type","Ludwigia palustris","Lycopodiaceae","Lycopodiaceae cf. Diphasiastrum complanatum","Lycopodiaceae undiff.","Lycopodiella inundata","Lycopodium","Lycopodium annotinum","Lycopodium annotinum-type","Lycopodium clavatum","Lycopodium clavatum-type","Lycopodium spike","Lycopodium tablets","Lycopodium undiff.","Lycopus","Lycopus-type","Lysimachia","Lysimachia cf. L. vulgaris","Lysimachia nemorum","Lysimachia nemorum-type","Lysimachia thyrsiflora","Lysimachia vulgaris","Lysimachia vulgaris-type","Lysimachia-type","Lythrum","Lythrum portula-type","Lythrum salicaria","Lythrum-type","Macrobiotus","Macrobiotus cf. M. echinogenitus","Magnolia-type","Maianthemum bifolium","Malus","Malus undiff.","Malus-type","Malva-type","Malvaceae","Marchantiophyta","Marrubium","Matricaria-type","Medicago falcata-type","Melampyrum","Melampyrum-type","Meliola","Mentha","Mentha-type","Menyanthes","Menyanthes trifoliata","Menyanthes trifoliata-type","Mercurialis","Mercurialis perennis-type","Micranthes stellaris","Micranthes stellaris-type","Microdalyellia armigera","Microrrhinum minus","Microthyriaceae","Microthyrium","Microthyrium microscopicum","Microthyrium undiff.","Microthyrium-type","Minuartia-type","Monactinus simplex","Monactinus simplex var. echinulatum","Monactinus simplex var. simplex","Monocotyledoneae","Montia","Mougeotia","Mougeotia cf. M. gracillima (type 61, HdV)","Mougeotia undiff.","Mougeotia-type","Muscari","Myosotis","Myosotis arvensis-type","Myrica-type","Myricaria germanica","Myriophyllum","Myriophyllum alterniflorum","Myriophyllum cf. M. spicatum","Myriophyllum cf. M. verticillatum","Myriophyllum heterophyllum","Myriophyllum spicatum","Myriophyllum spicatum-type","Myriophyllum undiff.","Myriophyllum verticillatum","Myriophyllum verticillatum-type","Nebela","Nebela parvula","Nebela undiff.","Neurospora","Normapolles","Nuphar","Nymphaea","Nymphaea alba","Nymphaea alba-type","Nymphaea cf. N. candida","Nymphaea undiff.","Nymphaeaceae","Nymphoides peltata-type","Nyssa","Odontites","Odontites-type","Oenanthe","Oenanthe-type","Oenothera","Olea","Oleaceae","Onagraceae","Onobrychis","Ononis","Ononis-type","Onopordum","Ophioglossum","Ophioglossum vulgatum","Orchidaceae","Oribatida (type 396, HdV)","Orlaya grandiflora","Ornithogalum umbellatum-type","Ornithogalum-type","Ostrya-type","Oxalis","Oxyria-type","Papaver","Papaver rhoeas-type","Papaver somniferum","Papaveraceae","Parapediastrum biradiatum","Parnassia","Parnassia palustris","Parnassia-type","Pediastrum","Pediastrum angulosum","Pediastrum angulosum var. angulosum","Pediastrum angulosum var. asperum","Pediastrum braunii","Pediastrum duplex","Pediastrum duplex var. duplex","Pediastrum duplex var. rugulosum","Pediastrum muticum var. scutum","Pediastrum orientale","Pediastrum undiff.","Pedicularis","Pedicularis palustris-type","Penium","Persicaria","Persicaria amphibia","Persicaria amphibia-type","Persicaria cf. P. lapathifolia","Persicaria lapathifolia","Persicaria maculosa","Persicaria maculosa-type","Petasites","Petasites hybridus-type","Petasites-type","Peucedanum","Peucedanum palustre-type","Peucedanum-type","Phegopteris","Phegopteris connectilis","Phragmites","Phragmites australis","Phragmites-type","Phyteuma","Phyteuma-type","Picea","Picea abies","Pilularia","Pimpinella anisum","Pimpinella major","Pimpinella major-type","Pimpinella major/P. saxifraga","Pinguicula","Pinnularia","Pinus","Pinus (Tertiary)","Pinus cembra","Pinus cembra-type","Pinus sp.","Pinus subg. Pinus","Pinus subg. Strobus-type","Pinus sylvestris","Pinus sylvestris-type","Pisum sativum","Plantaginaceae","Plantaginaceae undiff.","Plantago","Plantago alpina","Plantago alpina-type","Plantago atrata-type","Plantago coronopus","Plantago lanceolata","Plantago lanceolata-type","Plantago major","Plantago major-type","Plantago major/P. media","Plantago major/P. media-type","Plantago maritima-type","Plantago media","Plantago media-type","Plantago sp.","Platanus","Platycarya","Platyhelminthes (type 353A, HdV)","Platyhelminthes (type 353B, HdV)","Pleospora sp. (type 3B, HdV)","Pleospora undiff.","Pleurospermum","Pleurospermum austriacum","Pleurospermum austriacum-type","Poaceae","Poaceae (Cerealia-type excluding Secale)","Poaceae (Cerealia-type)","Poaceae (Cerealia)","Poaceae (Cerealia) excluding Secale","Poaceae (Cerealia) undiff.","Podocarpus-type","Podospora sp./Zopfiella sp. (type 466, HdV)","Podospora-type (type 368, HdV)","Polemonium","Polemonium caeruleum","Polygala","Polygonaceae","Polygonaceae undiff.","Polygonatum","Polygonum","Polygonum aviculare","Polygonum aviculare-type","Polygonum sp.","Polypodiaceae","Polypodiophyta (monolete, psilate)","Polypodiophyta (monolete, verrucate)","Polypodium","Polypodium vulgare","Populus","Porifera","Potamogeton","Potamogeton natans-type","Potamogeton-type","Potentilla","Potentilla-type","Potentilla/Comarum","Potentilla/Comarum-type","Potentilla/Fragaria","Poterium sanguisorba","Poterium sanguisorba subsp. sanguisorba","Primula","Primula clusiana-type","Primula farinosa-type","Primula veris-type","Primulaceae","Prunella-type","Prunus","Prunus sp.","Prunus-type","Pseudopediastrum boryanum","Pseudopediastrum boryanum var. boryanum","Pseudopediastrum boryanum var. boryanum sensu lato","Pseudopediastrum boryanum var. cornutum","Pseudopediastrum boryanum var. longicorne","Pseudopediastrum brevicorne","Pseudopediastrum integrum","Pseudopediastrum kawraiskyi","Pteridium","Pteridium aquilinum","Pteridophyta","Pteridophyta (monolete, verrucate)","Pteridophyta (monolete) undiff.","Pterocarya","Pterocarya fraxinifolia","Pulmonaria","Pulmonaria-type","Pyrola","Pyxidicula","Quercus","Quercus coccifera","Quercus pubescens","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Ranunculaceae","Reseda","Reseda lutea-type","Rhabdocoela","Rhabdocoela (type 353, HdV)","Rhamnaceae","Rhamnus","Rhinanthus","Rhinanthus-type","Rhinanthus/Veronica","Rhizopoda","Rhizopoda undiff.","Rhododendron","Rhododendron subsect. Ledum","Rhododendron tomentosum","Rhus-type","Ribes","Ribes","Ribes","Riccia","Rivularia","Rosa","Rosa-type","Rosaceae","Rosaceae undiff.","Rotifera undiff.","Rotifera/Tardigrada","Rubiaceae","Rubus","Rubus","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Rumex","Sagina","Sagina procumbens-type","Sagina-type","Sagittaria","Sagittaria-type","Salix","Salix herbacea-type","Salvia","Sambucus","Sambucus","Sambucus","Sambucus","Sambucus","Sambucus","Sambucus","Sambucus","Sambucus","Samolus valerandi","Sample quantity","Sanguisorba minor-type","Sanguisorba officinalis","Sanicula europaea","Sanicula-type","Saussurea-type","Saxifraga","Saxifraga aizoides-type","Saxifraga granulata","Saxifraga granulata-type","Saxifraga hirculus-type","Saxifraga oppositifolia","Saxifraga oppositifolia-type","Saxifraga undiff.","Saxifragaceae","Saxifragaceae undiff.","Scabiosa","Scabiosa columbaria subsp. pratensis-type","Scabiosa columbaria-type","Scandix pecten-veneris/Caucalis platycarpos","Scenedesmus","Scenedesmus undiff.","Scheuchzeria","Scheuchzeria palustris","Sciadopitys","Sciadopitys-type","Scilla-type","Scleranthus","Scleranthus annuus","Scleranthus annuus-type","Scleranthus cf. S. annuus","Scleranthus cf. S. perennis","Scleranthus perennis","Scleranthus perennis-type","Scleranthus-type","Scrophularia","Scrophularia-type","Scrophulariaceae","Scutellaria","Secale","Secale cereale","Secale-type","Securigera varia","Sedum","Sedum-type","Selaginella","Selaginella selaginoides","Selaginellaceae","Senecio","Senecio-type","Senecio/Aster","Sequoia","Serratula","Serratula-type","Seseli-type","Sigmopollis","Silene","Silene dioica-type","Silene flos-cuculi","Silene latifolia","Silene viscaria-type","Silene vulgaris","Silene vulgaris-type","Silene-type","Silene-type undiff.","Sileneae","Silenoideae-type","Sinapis-type","Sium latifolium-type","Solanaceae","Solanum","Solanum cf. S. nigrum","Solanum dulcamara","Solanum nigrum","Solanum nigrum-type","Soldanella","Sorbus","Sorbus aria-type","Sorbus aucuparia","Sorbus group","Sorbus torminalis","Sorbus-type","Sordaria-type (type 55A, HdV)","Sordariaceae","Sordariaceae/Sordaria (type 55B, HdV)","Sparganium","Sparganium erectum","Sparganium-type","Spergula","Spergula-type","Spergularia-type","Sphagnum","Spirogyra","Spirogyra cf. S. scrobiculata","Spirogyra-type","Sporormiella","Sporormiella (type 113, HdV)","Stachys","Stachys-type","Staurastrum","Staurastrum undiff.","Stauridium tetras","Stellaria","Stellaria holostea","Stellaria-type","Stratiotes aloides","Succisa","Succisa pratensis","Succisa-type","Succisella","Swertia perennis","Symphytum","Symphytum cf. S. officinale","Symphytum-type","Symplocos","Tardigrada","Tardigrada (type 902, HdV)","Tardigrada undiff.","Taxus","Taxus baccata","Tetraëdron","Tetraëdron minimum","Tetraploa scheueri","Teucrium","Thalictrum","Thalictrum-type","Thecaphora","Thelypteris","Thelypteris palustris","Thesium","Thesium-type","Tilia","Tilia cordata","Tilia platyphyllos","Tilia undiff.","Tilletia sphagni","Tilletia sphagni (type 27, HdV)","Tofieldia","Transeauina","Transeauina (type 214, HdV)","Transeauina undiff.","Trapa","Trapa natans","Trichocladium opacum (type 10, HdV)","Trichuris trichiura","Trientalis","Trientalis europaea","Trifolium","Trifolium pratense","Trifolium pratense-type","Trifolium repens-type","Trifolium-type","Triglochin","Triticum","Triticum-type","Trochiscia undiff.","Trollius","Trollius europaeus","Trollius-type","Tsuga","Tsuga diversifolia-type","Tsuga-type","Turgenia latifolia","Typha","Typha angustifolia","Typha angustifolia-type","Typha angustifolia/Sparganium","Typha angustifolia/Sparganium-type","Typha latifolia","Typha latifolia-type","Typhaceae","Ulex-type","Ulmus","Ulmus/Zelkova","Umbilicus rupestris-type","Unknown","Unknown (Cretaceous)","Unknown (monolete, psilate)","Unknown (monolete)","Unknown (monolete) undiff.","Unknown (pre-Quaternary)","Unknown (Tertiary)","Unknown (trilete)","Unknown (trilete) undiff.","Unknown (type 160, HdV)","Unknown (type 181, HdV)","Unknown (type 224, HdV)","Unknown (type 33, HdV)","Unknown (type 366, HdV)","Unknown (type 38, HdV)","Unknown (type 41, HdV)","Unknown (type 708, HdV)","Unknown (type 74, HdV)","Unknown (type 86, HdV)","Unknown (type 91, HdV)","Urtica","Ustulina deusta","Ustulina deusta (type 44, HdV)","Utricularia","Vaccinioideae","Vaccinium","Vaccinium oxycoccos","Vaccinium-type","Valeriana","Valeriana cf. V. dioica","Valeriana cf. V. officinalis","Valeriana dioica","Valeriana dioica-type","Valeriana officinalis","Valeriana officinalis-type","Valerianella","Varia","Veratrum","Veratrum album","Veratrum-type","Verbascum","Vermes","Veronica","Veronica beccabunga","Veronica beccabunga-type","Veronica-type","Viburnum","Viburnum cf. V. opulus","Viburnum lantana","Viburnum opulus","Viburnum opulus-type","Viburnum undiff.","Vicia","Vicia cracca-type","Vicia-type","Vicia/Lathyrus","Vicia/Lathyrus-type","Viola","Viola canina-type","Viola palustris","Viola palustris-type","Viola tricolor","Viscum","Vitis","Vitis vinifera","Xanthium","Xanthium-type","Xylariaceae","Xylomyces chlamydosporis/X. aquaticus (type 201, HdV)","Zea mays","Zygnema","Zygnema-type","Zygnemataceae","Zygnemataceae undiff."]],"container":"<table class=\"display\">\n  <thead>\n    <tr>\n      <th>variablename<\/th>\n      <th>sites<\/th>\n      <th>samples<\/th>\n      <th>replacement<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"scrollX":"100%","dom":"t","columnDefs":[{"className":"dt-right","targets":[1,2]}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>

Puedes observar qeu hemos cambiado algunos de los nombres de los taxones en la tabla (no hay que ver más allá, esto es simplemente un ejemplo). Para reemplazar los nombres en la salida de samples(), tenemos que unir las dos tablas usando inner_join() (esto quiere decir que variablename debe aparecer en ambas tablas para que el resultado sea incluido), u luego seleccionaremos únicamente los elementos de la tabla de muestras que son relevantes para nuestro análisis:

allSamp <- samples(cz_dl)

allSamp <- allSamp %>%
  inner_join(translation, by = c("variablename" = "variablename")) %>% 
  dplyr::select(!c("variablename", "sites", "samples")) %>% 
  group_by(siteid, sitename, replacement,
           sampleid, units, age,
           agetype, depth, datasetid,
           long, lat) %>%
  summarise(value = sum(value), .groups='keep')

<div id="htmlwidget-c7c08d2ab8d4a90c54d7" style="width:100%;height:auto;" class="datatables html-widget"></div>
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plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Unidentified palynomorphs","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Vascular plants","Laboratory analyses","Laboratory analyses","Laboratory analyses","Laboratory analyses","Vascular plants","Vascular plants"],["concentration","volume","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","spore","pollen","pollen/spore","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","pollen","quantity added","counted","concentration","volume","pollen","pollen"],["Lycopodium tablets","Sample quantity","Plantago 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Petr"],[216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216190,216191,216191,216191,216191],[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,5,5,5],[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],[22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316,22316],[14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264,14264],["Anenské 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údolí"],[50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861,50.58861],[16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175,16.1175],[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],[null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null],["Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest.","Peat bog in a sandstone valley. Physiography: Valley. Surrounding vegetation: Spruce forest."],[696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696,696],[16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190,16190],["European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen Database","European Pollen 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Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr.","Data contributed by PALYCZ via Kunes Petr."]],"container":"<table class=\"display\">\n  <thead>\n    <tr>\n      <th>age<\/th>\n      <th>agetype<\/th>\n      <th>ageolder<\/th>\n      <th>ageyounger<\/th>\n      <th>chronologyid<\/th>\n      <th>chronologyname<\/th>\n      <th>units<\/th>\n      <th>value<\/th>\n      <th>context<\/th>\n      <th>element<\/th>\n      <th>taxonid<\/th>\n      <th>symmetry<\/th>\n      <th>taxongroup<\/th>\n      <th>elementtype<\/th>\n      <th>variablename<\/th>\n      <th>ecologicalgroup<\/th>\n      <th>analysisunitid<\/th>\n      <th>sampleanalyst<\/th>\n      <th>sampleid<\/th>\n      <th>depth<\/th>\n      <th>thickness<\/th>\n      <th>samplename<\/th>\n      <th>datasetid<\/th>\n      <th>siteid<\/th>\n      <th>sitename<\/th>\n      <th>lat<\/th>\n      <th>long<\/th>\n      <th>area<\/th>\n      <th>sitenotes<\/th>\n      <th>description<\/th>\n      <th>elev<\/th>\n      <th>collunitid<\/th>\n      <th>database<\/th>\n      <th>datasettype<\/th>\n      <th>age_range_old<\/th>\n      <th>age_range_young<\/th>\n      <th>datasetnotes<\/th>\n    <\/tr>\n  <\/thead>\n<\/table>","options":{"scrollX":"100%","dom":"t","columnDefs":[{"className":"dt-right","targets":[0,2,3,4,7,10,16,18,19,20,22,23,25,26,27,30,31,34,35]}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>

Análisis Simples

Trazado Estratigráfico

Podemos utilizar paquetes como rioja para hacer trazados estratigráficos para un único registro. Pero primero tenemos que hacer un manejo de datos diferente. A pesar de que podríamos hacer armonización nuevamente, vamos a tomar los 10 taxones más comúnes en un sitio dado los trazaremos en un diagrama estratigráfico.

Utilizaremos la función arrange() para ordenar confrome al número de veces que un taxón aparece en un núcleo. De esta forma, podemos tomar las muestras y seleccionar los taxones que aparecen en las diez primeras filas del marco de datos plottingTaxa.

# Get a particular site, select only taxa identified from pollen (and only trees/shrubs)
plottingSite <- cz_dl[[1]]

plottingTaxa <- taxa(plottingSite) %>%
  filter(ecologicalgroup %in% c("TRSH")) %>%
  filter(elementtype == "pollen") %>%
  arrange(desc(samples)) %>% 
  head(n = 10)

# Clean up. Select only pollen measured using NISP.
# We repeat the filters for pollen & ecological group on the samples
shortSamples <- samples(plottingSite) %>% 
  filter(variablename %in% plottingTaxa$variablename) %>% 
  filter(ecologicalgroup %in% c("TRSH")) %>%
  filter(elementtype == "pollen") %>%
  filter(units == "NISP")

# Transform to proportion values.
onesite <- shortSamples %>%
  group_by(age) %>%
  mutate(pollencount = sum(value, na.rm = TRUE)) %>%
  group_by(variablename) %>% 
  mutate(prop = value / pollencount) %>% 
  arrange(desc(age))

# Spread the data to a "wide" table, with taxa as column headings.
widetable <- onesite %>%
  dplyr::select(age, variablename, prop) %>% 
  mutate(prop = as.numeric(prop))

counts <- tidyr::pivot_wider(widetable,
                             id_cols = age,
                             names_from = variablename,
                             values_from = prop,
                             values_fill = 0)

Aparentemente, esto es una llamada compleja de comandos. Sin embargo, el código es bastante sencillo y brinda un control significativo sobre los taxones, unidades y otros elementos de tus datos antes de transformarlos en una matriz ancha (depth x taxon) que muchas herramientas estadísticas como los paquetes vegan o rioja usan.

Para crear gráficas, podemos usar strat.plot() del paquete rioja, ordenar los taxones usando puntajes promedio ponderados (wa.order). También se ha agregado un gráfico CONISS al borde del gráfico, para mostrar cómo funciona el nuevo marco de datos amplio con funciones métricas de distancia.

clust <- rioja::chclust(dist(sqrt(counts)),
                        method = "coniss")

plot <- rioja::strat.plot(counts[,-1] * 100, yvar = counts$age,
                  title = cz_dl[[1]]$sitename,
                  ylabel = "Calibrated Years BP",
                  xlabel = "Pollen (%)",
                  y.rev = TRUE,
                  clust = clust,
                  wa.order = "topleft", scale.percent = TRUE)

rioja::addClustZone(plot, clust, 4, col = "red")

Cambio en el tiempo entre sitios

Ahora tenemos información de sitios en toda la República Checa, con muestras y nombres de taxones. Para observar las distribuciones de taxones a lo largo del tiempo, su presencia/ausencia, seleccionaremos los 20 taxones principales (según la cantidad de veces que aparecen en los registros) y observaré sus distribuciones en el tiempo

plottingTaxa <- taxa(plottingSite) %>%
  filter(ecologicalgroup %in% c("TRSH")) %>%
  filter(elementtype == "pollen") %>%
  arrange(desc(sites)) %>% 
  head(n = 20)

taxabyage <- samples(cz_dl) %>% 
  filter(variablename %in% plottingTaxa$variablename) %>% 
  group_by(variablename, "age" = round(age * 2, -3) / 2) %>% 
  summarise(n = length(unique(siteid)), .groups = 'keep')

samplesbyage <- samples(cz_dl) %>% 
  filter(variablename %in% plottingTaxa$variablename) %>% 
  group_by("age" = round(age * 2, -3) / 2) %>% 
  summarise(samples = length(unique(siteid)), .groups = 'keep')

groupbyage <- taxabyage %>%
  inner_join(samplesbyage, by = "age") %>% 
  mutate(proportion = n / samples)

ggplot(groupbyage, aes(x = age, y = proportion)) +
  geom_point() +
  geom_smooth(method = 'gam', 
              method.args = list(family = 'binomial')) +
  facet_wrap(~variablename) +
  coord_cartesian(xlim = c(20000, 0), ylim = c(0, 1)) +
  scale_x_reverse(breaks = c(10000, 20000)) +
  xlab("Proportion of Sites with Taxon") +
  theme_bw()

Podemos ver patrones de cambio claros, y los alizados se crean con modelos aditivos generalizados (GAM) en R, por lo que podemos tener control sobre el modelado real usando los paquetes gam o mgcv. Dependiendo de cómo dividamos los datos, también podemos observar los cambios de altitud, latitud o longitud para comprender mejor cómo cambiaron las distribuciones y abundancias de especies con el tiempo en esta región.

Distribuciones en el clima con ráster (Máximas temperaturas de julio)

A menudo nos interesa la interacción entre los taxones y el clima, asumiendo que el tiempo es un indicador de los entornos cambiantes. El desarrollo de conjuntos de datos globales a gran escala para el clima ha hecho que sea relativamente sencillo acceder a los datos de la nube en formato raster. R proporciona una serie de herramientas (en los paquetes sf y raster) para administrar datos espaciales y brindar soporte para el análisis espacial de datos.

El primer paso es tomar nuestros datos de muestra y convertirlos en un objeto espacial usando el paquete sf en R:

modern <- samples(cz_dl) %>% 
  filter(age < 50) %>% 
  filter(ecologicalgroup == "TRSH" & elementtype == "pollen" & units == "NISP")

spatial <- sf::st_as_sf(modern, 
                        coords = c("long", "lat"),
                        crs = "+proj=longlat +datum=WGS84")

Los datos son los mismos, el paquete sf crea un objeto llamado spatial que es un marco de datos data.framecon toda la información extraída de samples(), y una columna (geometry) que contiene los datos espaciales.

Podemos utilizar la funcion getData() del paquete raster para obtener datos de WorldClim. Las operaciones siguientes pueden ser aplicadas a cualquier tipo de datos raster, asumiendo que haya sido cargada en R como un objeto de tipo raster.

A continuación extraeremos datos raster, a una resolucion de 10 minutos para la variable $T_{max}$, temperatura máxima mensual. El raster en sí mismo, tiene 12 capas, una para cada mes. Con la función extract() obtenemos la información sólamente para el séptimo mes, julio.

worldTmax <- raster::getData('worldclim', var = 'tmax', res = 10)
spatial$tmax7 <- raster::extract(worldTmax, spatial)[,7]

Esto agrega una columna al marco de datos o data.frame spatial, que contiene la temperatura máxima de julio para cada taxón en cada sitio. (todos los taxónes en un sitio compartirán el mismo valor). Hemos filtrado anteriormente para obtener solo los taxones UPHE, pero eso aún nos deja con 1 distintos nombres para los taxones. Con la función de dplyr mutate() vamos a extraer únicamente el género:

spatial <- spatial %>%
  mutate(variablename = stringr::str_replace(variablename, "[[:punct:]]", " ")) %>% 
  mutate(variablename = stringr::word(variablename, 1)) %>% 
  group_by(variablename, siteid) %>% 
  summarise(tmax7 = max(tmax7), .groups = "keep") %>%
  group_by(variablename) %>% 
  filter(n() > 3)

Ajustando el ambiente

queremos obtener la distribución de fondo de las temperaturas de julio en la República Checa, para graficar las distribuciones de los taxones contra el valor máximo de temperatura. Sin embargo, como todos los valores en el sitio son el mismo (porque utilizamos una superposición espacial), el máximo es el mismo que la temperatura real de julio en el sitio.

maxsamp <- spatial %>% 
  dplyr::group_by(siteid) %>% 
  dplyr::summarise(tmax7 = max(tmax7), .groups = 'keep')

Ahora, para graficarlo, utilizaremos facet_wrap() para graficar cada taxón en su propio panel:

ggplot() +
  geom_density(data = spatial,
               aes(x = round(tmax7 / 10, 0)), col = 2) +
  facet_wrap(~variablename) +
  geom_density(data = maxsamp, aes(x = tmax7 / 10)) +
  xlab("Maximum July Temperature") +
  ylab("Kernel Density")

Conclusión

Hemos hecho mucho en este ejemplo.

buscamos sitios utilizando nombres y parámetros geográficos.
filtramos los resultados utilizando parametros temporales y espaciales
obtuvimos información para conjuntos de datos seleccionados y
realizamos análisis básicos con información ráster para clima

Esperamos estos ejemplos puedan ser utilizados como plantillas para trabajo futuro o para hacer algo nuevo y divertido!

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simple_workflow_ES.md

simple_workflow_ES.md

Introducción

Acceder y manipular información en `neotoma2`

Acceder a la ayuda en Neotoma

Búsqueda por Sitios

`get_sites()`

Nombre del sitio: `sitename="%Lait%"` {.tabset}

Código

Resultados

Ubicación: `loc=c()` {.tabset}

Código

Resultados

Auxiliares para objetos de tipo Sitios {.tabset}

Código

Resultados

Búsqueda de conjuntos de datos (dataset): {.tabset}

Código

Resultados

Filtrar Registros {.tabset}

Código

Resultados

Obteniendo las muestras con `sample()`.

Extracción de taxones {.tabset}

Código

Resultados

{-}

Armonización simple {.tabset}

Código

Resultados

{-}

Análisis Simples

Trazado Estratigráfico

Cambio en el tiempo entre sitios

Distribuciones en el clima con ráster (Máximas temperaturas de julio)

Ajustando el ambiente

Conclusión

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simple_workflow_ES.md

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simple_workflow_ES.md

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Introducción

Acceder y manipular información en neotoma2

Acceder a la ayuda en Neotoma

Búsqueda por Sitios

get_sites()

Nombre del sitio: sitename="%Lait%" {.tabset}

Código

Resultados

Ubicación: loc=c() {.tabset}

Código

Resultados

Auxiliares para objetos de tipo Sitios {.tabset}

Código

Resultados

Búsqueda de conjuntos de datos (dataset): {.tabset}

Código

Resultados

Filtrar Registros {.tabset}

Código

Resultados

Obteniendo las muestras con sample().

Extracción de taxones {.tabset}

Código

Resultados

{-}

Armonización simple {.tabset}

Código

Resultados

{-}

Análisis Simples

Trazado Estratigráfico

Cambio en el tiempo entre sitios

Distribuciones en el clima con ráster (Máximas temperaturas de julio)

Ajustando el ambiente

Conclusión

Acceder y manipular información en `neotoma2`

`get_sites()`

Nombre del sitio: `sitename="%Lait%"` {.tabset}

Ubicación: `loc=c()` {.tabset}

Obteniendo las muestras con `sample()`.