diff --git a/.gitignore b/.gitignore index 047313a32f..e73744aaba 100644 --- a/.gitignore +++ b/.gitignore @@ -91,6 +91,11 @@ parm/post/postxconfig-NT-GFS.txt parm/post/postxconfig-NT-gefs-aerosol.txt parm/post/postxconfig-NT-gefs-chem.txt parm/ufs/noahmptable.tbl +parm/ufs/model_configure.IN +parm/ufs/MOM_input_*.IN +parm/ufs/MOM6_data_table.IN +parm/ufs/ice_in.IN +parm/ufs/ufs.configure.*.IN parm/wafs # Ignore sorc and logs folders from externals diff --git a/parm/config/gefs/config.fcst b/parm/config/gefs/config.fcst index 4c8d3be99f..6f4a11f7c4 100644 --- a/parm/config/gefs/config.fcst +++ b/parm/config/gefs/config.fcst @@ -231,20 +231,6 @@ export FSICL="0" export FSICS="0" #--------------------------------------------------------------------- - -# ideflate: netcdf zlib lossless compression (0-9): 0 no compression -# nbits: netcdf lossy compression level (0-32): 0 lossless -export ideflate=1 -export nbits=14 -export ishuffle=0 -# compression for RESTART files written by FMS -export shuffle=1 -export deflate_level=1 - -#--------------------------------------------------------------------- -# Disable the use of coupler.res; get model start time from model_configure -export USE_COUPLER_RES="NO" - # Write more variables to output export DIAG_TABLE="${HOMEgfs}/parm/ufs/fv3/diag_table" diff --git a/parm/config/gefs/config.ufs b/parm/config/gefs/config.ufs index 68b364529e..2031d0b538 100644 --- a/parm/config/gefs/config.ufs +++ b/parm/config/gefs/config.ufs @@ -72,9 +72,12 @@ case "${machine}" in "WCOSS2") npe_node_max=128 ;; - "HERA" | "ORION" | "HERCULES" ) + "HERA" | "ORION" ) npe_node_max=40 ;; + "HERCULES" ) + npe_node_max=80 + ;; "JET") case "${PARTITION_BATCH}" in "xjet") @@ -193,7 +196,7 @@ case "${fv3_res}" in export WRITE_GROUP=2 export WRTTASK_PER_GROUP_PER_THREAD_PER_TILE=10 export WRITE_GROUP_GFS=4 - export WRTTASK_PER_GROUP_PER_THREAD_PER_TILE_GFS=10 + export WRTTASK_PER_GROUP_PER_THREAD_PER_TILE_GFS=20 #Note this should be 10 for WCOSS2 ;; "C1152") export DELTIM=120 @@ -209,7 +212,7 @@ case "${fv3_res}" in export WRITE_GROUP=4 export WRTTASK_PER_GROUP_PER_THREAD_PER_TILE=10 # TODO: refine these numbers when a case is available export WRITE_GROUP_GFS=4 - export WRTTASK_PER_GROUP_PER_THREAD_PER_TILE_GFS=10 # TODO: refine these numbers when a case is available + export WRTTASK_PER_GROUP_PER_THREAD_PER_TILE_GFS=20 # TODO: refine these numbers when a case is available ;; "C3072") export DELTIM=90 @@ -258,6 +261,10 @@ case ${fv3_res} in OUTPUT_FILETYPE_ATM="netcdf_parallel" OUTPUT_FILETYPE_SFC="netcdf_parallel" ;; + *) + echo "FATAL ERROR: Unrecognized FV3 resolution ${fv3_res}" + exit 15 + ;; esac export OUTPUT_FILETYPE_ATM OUTPUT_FILETYPE_SFC @@ -309,11 +316,12 @@ if [[ "${skip_mom6}" == "false" ]]; then NY_GLB=320 DT_DYNAM_MOM6='1800' DT_THERM_MOM6='3600' - FRUNOFF="" + FRUNOFF="runoff.daitren.clim.1deg.nc" CHLCLIM="seawifs_1998-2006_smoothed_2X.nc" - MOM6_RESTART_SETTING='n' + MOM6_RESTART_SETTING='r' MOM6_RIVER_RUNOFF='False' eps_imesh="2.5e-1" + TOPOEDITS="ufs.topo_edits_011818.nc" if [[ "${DO_JEDIOCNVAR:-NO}" = "YES" ]]; then MOM6_DIAG_COORD_DEF_Z_FILE="oceanda_zgrid_75L.nc" MOM6_DIAG_MISVAL="0.0" @@ -321,6 +329,7 @@ if [[ "${skip_mom6}" == "false" ]]; then MOM6_DIAG_COORD_DEF_Z_FILE="interpolate_zgrid_40L.nc" MOM6_DIAG_MISVAL="-1e34" fi + MOM6_ALLOW_LANDMASK_CHANGES='True' ;; "050") ntasks_mom6=60 @@ -334,7 +343,6 @@ if [[ "${skip_mom6}" == "false" ]]; then MOM6_RESTART_SETTING='n' MOM6_RIVER_RUNOFF='True' eps_imesh="1.0e-1" - TOPOEDITS="ufs.topo_edits_011818.nc" if [[ "${DO_JEDIOCNVAR:-NO}" = "YES" ]]; then MOM6_DIAG_COORD_DEF_Z_FILE="oceanda_zgrid_75L.nc" MOM6_DIAG_MISVAL="0.0" @@ -342,7 +350,8 @@ if [[ "${skip_mom6}" == "false" ]]; then MOM6_DIAG_COORD_DEF_Z_FILE="interpolate_zgrid_40L.nc" MOM6_DIAG_MISVAL="-1e34" fi - MOM6_ALLOW_LANDMASK_CHANGES='True' + MOM6_ALLOW_LANDMASK_CHANGES='False' + TOPOEDITS="" ;; "025") ntasks_mom6=220 @@ -356,7 +365,6 @@ if [[ "${skip_mom6}" == "false" ]]; then MOM6_RIVER_RUNOFF='True' MOM6_RESTART_SETTING="r" eps_imesh="1.0e-1" - TOPOEDITS="" if [[ "${DO_JEDIOCNVAR:-NO}" = "YES" ]]; then MOM6_DIAG_COORD_DEF_Z_FILE="oceanda_zgrid_75L.nc" MOM6_DIAG_MISVAL="0.0" @@ -364,7 +372,8 @@ if [[ "${skip_mom6}" == "false" ]]; then MOM6_DIAG_COORD_DEF_Z_FILE="interpolate_zgrid_40L.nc" MOM6_DIAG_MISVAL="-1e34" fi - MOM6_ALLOW_LANDMASK_CHANGES='True' + MOM6_ALLOW_LANDMASK_CHANGES='False' + TOPOEDITS="" ;; *) echo "FATAL ERROR: Unsupported MOM6 resolution = ${mom6_res}, ABORT!" @@ -378,10 +387,10 @@ if [[ "${skip_mom6}" == "false" ]]; then export DT_DYNAM_MOM6 DT_THERM_MOM6 export FRUNOFF export CHLCLIM + export TOPOEDITS export MOM6_RIVER_RUNOFF export MOM6_RESTART_SETTING export eps_imesh - export TOPOEDITS export MOM6_DIAG_COORD_DEF_Z_FILE export MOM6_DIAG_MISVAL export MOM6_ALLOW_LANDMASK_CHANGES @@ -397,6 +406,7 @@ if [[ "${skip_cice6}" == "false" ]]; then echo "FATAL ERROR: CICE6 cannot be configured without MOM6, ABORT!" exit 1 fi + nthreads_cice6=${nthreads_mom6} # CICE6 needs to run on same threads as MOM6 case "${cice6_res}" in "500") @@ -470,39 +480,42 @@ if [[ "${skip_gocart}" == "false" ]]; then fi # Set the name of the UFS (previously nems) configure template to use +# Default ufs.configure templates for supported model configurations case "${model_list}" in atm) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.atm.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.atm.IN" ;; atm.aero) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.atm_aero.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.atmaero.IN" ;; atm.wave) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.leapfrog_atm_wav.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.leapfrog_atm_wav.IN" ;; atm.ocean.ice) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2s_esmf.IN" ;; atm.ocean.ice.aero) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_aero.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2sa_esmf.IN" ;; atm.ocean.ice.wave) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_outerwave.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2sw_esmf.IN" ;; atm.ocean.ice.wave.aero) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_aero_outerwave.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2swa_esmf.IN" ;; *) - echo "FATAL ERROR: Unable to determine appropriate UFS configure template for ${model_list}" + echo "FATAL ERROR: Unsupported UFSWM configuration for ${model_list}" exit 16 ;; esac +# Allow user to override the default template +export ufs_configure_template=${ufs_configure_template:-${default_template:-"/dev/null"}} +unset model_list default_template + if [[ ! -r "${ufs_configure_template}" ]]; then echo "FATAL ERROR: ${ufs_configure_template} either doesn't exist or is not readable." exit 17 fi -unset model_list - echo "END: config.ufs" diff --git a/parm/config/gfs/config.fcst b/parm/config/gfs/config.fcst index f367df1194..6c4ce639f8 100644 --- a/parm/config/gfs/config.fcst +++ b/parm/config/gfs/config.fcst @@ -231,20 +231,6 @@ export FSICL="0" export FSICS="0" #--------------------------------------------------------------------- - -# ideflate: netcdf zlib lossless compression (0-9): 0 no compression -# nbits: netcdf lossy compression level (0-32): 0 lossless -export ideflate=1 -export nbits=14 -export ishuffle=0 -# compression for RESTART files written by FMS -export shuffle=1 -export deflate_level=1 - -#--------------------------------------------------------------------- -# Disable the use of coupler.res; get model start time from model_configure -export USE_COUPLER_RES="NO" - if [[ "${CDUMP}" =~ "gdas" ]] ; then # GDAS cycle specific parameters # Variables used in DA cycling diff --git a/parm/config/gfs/config.ice b/parm/config/gfs/config.ice index 205458020f..055bd1e2bb 100644 --- a/parm/config/gfs/config.ice +++ b/parm/config/gfs/config.ice @@ -6,4 +6,9 @@ echo "BEGIN: config.ice" export min_seaice="1.0e-6" export use_cice_alb=".true." +export MESH_ICE="mesh.mx${ICERES}.nc" + +export CICE_GRID="grid_cice_NEMS_mx${ICERES}.nc" +export CICE_MASK="kmtu_cice_NEMS_mx${ICERES}.nc" + echo "END: config.ice" diff --git a/parm/config/gfs/config.ocn b/parm/config/gfs/config.ocn index 37f6a966aa..f9e6595ce9 100644 --- a/parm/config/gfs/config.ocn +++ b/parm/config/gfs/config.ocn @@ -2,8 +2,7 @@ echo "BEGIN: config.ocn" -# MOM_input template to use -export MOM_INPUT="MOM_input_template_${OCNRES}" +export MESH_OCN="mesh.mx${OCNRES}.nc" export DO_OCN_SPPT="NO" # In MOM_input, this variable is determines OCN_SPPT (OCN_SPPT = True|False) export DO_OCN_PERT_EPBL="NO" # In MOM_input, this variable determines PERT_EPBL (PERT_EPBL = True|False) diff --git a/parm/config/gfs/config.ufs b/parm/config/gfs/config.ufs index 46bf89f1af..0a59da47ca 100644 --- a/parm/config/gfs/config.ufs +++ b/parm/config/gfs/config.ufs @@ -480,39 +480,42 @@ if [[ "${skip_gocart}" == "false" ]]; then fi # Set the name of the UFS (previously nems) configure template to use +# Default ufs.configure templates for supported model configurations case "${model_list}" in atm) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.atm.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.atm.IN" ;; atm.aero) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.atm_aero.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.atmaero.IN" ;; atm.wave) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.leapfrog_atm_wav.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.leapfrog_atm_wav.IN" ;; atm.ocean.ice) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2s_esmf.IN" ;; atm.ocean.ice.aero) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_aero.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2sa_esmf.IN" ;; atm.ocean.ice.wave) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_outerwave.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2sw_esmf.IN" ;; atm.ocean.ice.wave.aero) - export ufs_configure_template="${HOMEgfs}/parm/ufs/ufs.configure.cpld_aero_outerwave.IN" + default_template="${HOMEgfs}/parm/ufs/ufs.configure.s2swa_esmf.IN" ;; *) - echo "FATAL ERROR: Unable to determine appropriate UFS configure template for ${model_list}" + echo "FATAL ERROR: Unsupported UFSWM configuration for ${model_list}" exit 16 ;; esac +# Allow user to override the default template +export ufs_configure_template=${ufs_configure_template:-${default_template:-"/dev/null"}} +unset model_list default_template + if [[ ! -r "${ufs_configure_template}" ]]; then echo "FATAL ERROR: ${ufs_configure_template} either doesn't exist or is not readable." exit 17 fi -unset model_list - echo "END: config.ufs" diff --git a/parm/ufs/fv3/data_table b/parm/ufs/fv3/data_table deleted file mode 100644 index 4ca9128415..0000000000 --- a/parm/ufs/fv3/data_table +++ /dev/null @@ -1 +0,0 @@ -"OCN", "runoff", "runoff", "./INPUT/@[FRUNOFF]", "none" , 1.0 diff --git a/parm/ufs/mom6/MOM_input_template_025 b/parm/ufs/mom6/MOM_input_template_025 deleted file mode 100644 index df56a3f486..0000000000 --- a/parm/ufs/mom6/MOM_input_template_025 +++ /dev/null @@ -1,902 +0,0 @@ -! This input file provides the adjustable run-time parameters for version 6 of the Modular Ocean Model (MOM6). -! Where appropriate, parameters use usually given in MKS units. - -! This particular file is for the example in ice_ocean_SIS2/OM4_025. - -! This MOM_input file typically contains only the non-default values that are needed to reproduce this example. -! A full list of parameters for this example can be found in the corresponding MOM_parameter_doc.all file -! which is generated by the model at run-time. -! === module MOM_domains === -TRIPOLAR_N = True ! [Boolean] default = False - ! Use tripolar connectivity at the northern edge of the domain. With - ! TRIPOLAR_N, NIGLOBAL must be even. -NIGLOBAL = @[NX_GLB] ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NJGLOBAL = @[NY_GLB] ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NIHALO = 4 ! default = 4 - ! The number of halo points on each side in the x-direction. With - ! STATIC_MEMORY_ this is set as NIHALO_ in MOM_memory.h at compile time; without - ! STATIC_MEMORY_ the default is NIHALO_ in MOM_memory.h (if defined) or 2. -NJHALO = 4 ! default = 4 - ! The number of halo points on each side in the y-direction. With - ! STATIC_MEMORY_ this is set as NJHALO_ in MOM_memory.h at compile time; without - ! STATIC_MEMORY_ the default is NJHALO_ in MOM_memory.h (if defined) or 2. -! LAYOUT = 32, 18 ! - ! The processor layout that was actually used. -! IO_LAYOUT = 1, 1 ! default = 1 - ! The processor layout to be used, or 0,0 to automatically set the io_layout to - ! be the same as the layout. - -! === module MOM === -USE_REGRIDDING = True ! [Boolean] default = False - ! If True, use the ALE algorithm (regridding/remapping). If False, use the - ! layered isopycnal algorithm. -THICKNESSDIFFUSE = True ! [Boolean] default = False - ! If true, interface heights are diffused with a coefficient of KHTH. -THICKNESSDIFFUSE_FIRST = True ! [Boolean] default = False - ! If true, do thickness diffusion before dynamics. This is only used if - ! THICKNESSDIFFUSE is true. -DT = @[DT_DYNAM_MOM6] ! [s] - ! The (baroclinic) dynamics time step. The time-step that is actually used will - ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode - ! or the coupling timestep in coupled mode.) -DT_THERM = @[DT_THERM_MOM6] ! [s] default = 1800.0 - ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be - ! an integer multiple of DT and less than the forcing or coupling time-step, - ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer - ! multiple of the coupling timestep. By default DT_THERM is set to DT. -THERMO_SPANS_COUPLING = @[MOM6_THERMO_SPAN] ! [Boolean] default = False - ! If true, the MOM will take thermodynamic and tracer timesteps that can be - ! longer than the coupling timestep. The actual thermodynamic timestep that is - ! used in this case is the largest integer multiple of the coupling timestep - ! that is less than or equal to DT_THERM. -HFREEZE = 20.0 ! [m] default = -1.0 - ! If HFREEZE > 0, melt potential will be computed. The actual depth - ! over which melt potential is computed will be min(HFREEZE, OBLD) - ! where OBLD is the boundary layer depth. If HFREEZE <= 0 (default) - ! melt potential will not be computed. -USE_PSURF_IN_EOS = False ! [Boolean] default = False - ! If true, always include the surface pressure contributions in equation of - ! state calculations. -FRAZIL = True ! [Boolean] default = False - ! If true, water freezes if it gets too cold, and the accumulated heat deficit - ! is returned in the surface state. FRAZIL is only used if - ! ENABLE_THERMODYNAMICS is true. -DO_GEOTHERMAL = True ! [Boolean] default = False - ! If true, apply geothermal heating. -BOUND_SALINITY = True ! [Boolean] default = False - ! If true, limit salinity to being positive. (The sea-ice model may ask for more - ! salt than is available and drive the salinity negative otherwise.) -MIN_SALINITY = 0.01 ! [PPT] default = 0.01 - ! The minimum value of salinity when BOUND_SALINITY=True. The default is 0.01 - ! for backward compatibility but ideally should be 0. -C_P = 3992.0 ! [J kg-1 K-1] default = 3991.86795711963 - ! The heat capacity of sea water, approximated as a constant. This is only used - ! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10 - ! definition of conservative temperature. -CHECK_BAD_SURFACE_VALS = True ! [Boolean] default = False - ! If true, check the surface state for ridiculous values. -BAD_VAL_SSH_MAX = 50.0 ! [m] default = 20.0 - ! The value of SSH above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SSS_MAX = 75.0 ! [PPT] default = 45.0 - ! The value of SSS above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SST_MAX = 55.0 ! [deg C] default = 45.0 - ! The value of SST above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SST_MIN = -3.0 ! [deg C] default = -2.1 - ! The value of SST below which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -DEFAULT_2018_ANSWERS = True ! [Boolean] default = True - ! This sets the default value for the various _2018_ANSWERS parameters. -WRITE_GEOM = 2 ! default = 1 - ! If =0, never write the geometry and vertical grid files. If =1, write the - ! geometry and vertical grid files only for a new simulation. If =2, always - ! write the geometry and vertical grid files. Other values are invalid. -SAVE_INITIAL_CONDS = False ! [Boolean] default = False - ! If true, write the initial conditions to a file given by IC_OUTPUT_FILE. - -! === module MOM_hor_index === -! Sets the horizontal array index types. - -! === module MOM_fixed_initialization === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = True - ! If true, use an older algorithm to calculate the sine and - ! cosines needed rotate between grid-oriented directions and - ! true north and east. Differences arise at the tripolar fold -USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = True - ! If true, use older code that incorrectly sets the longitude in some points - ! along the tripolar fold to be off by 360 degrees. -TOPO_CONFIG = "file" ! - ! This specifies how bathymetry is specified: - ! file - read bathymetric information from the file - ! specified by (TOPO_FILE). - ! flat - flat bottom set to MAXIMUM_DEPTH. - ! bowl - an analytically specified bowl-shaped basin - ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. - ! spoon - a similar shape to 'bowl', but with an vertical - ! wall at the southern face. - ! halfpipe - a zonally uniform channel with a half-sine - ! profile in the meridional direction. - ! benchmark - use the benchmark test case topography. - ! Neverland - use the Neverland test case topography. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a slope and channel configuration for the - ! ISOMIP test case. - ! DOME2D - use a shelf and slope configuration for the - ! DOME2D gravity current/overflow test case. - ! Kelvin - flat but with rotated land mask. - ! seamount - Gaussian bump for spontaneous motion test case. - ! dumbbell - Sloshing channel with reservoirs on both ends. - ! shelfwave - exponential slope for shelfwave test case. - ! Phillips - ACC-like idealized topography used in the Phillips config. - ! dense - Denmark Strait-like dense water formation and overflow. - ! USER - call a user modified routine. -TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" - ! The file from which the bathymetry is read. -TOPO_EDITS_FILE = "All_edits.nc" ! default = "" - ! The file from which to read a list of i,j,z topography overrides. -ALLOW_LANDMASK_CHANGES = @[MOM6_ALLOW_LANDMASK_CHANGES] ! default = "False" - ! If true, allow topography overrides to change ocean points to land -MAXIMUM_DEPTH = 6500.0 ! [m] - ! The maximum depth of the ocean. -MINIMUM_DEPTH = 9.5 ! [m] default = 0.0 - ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is - ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is - ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than - ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. - -! === module MOM_open_boundary === -! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, -! if any. -MASKING_DEPTH = 0.0 ! [m] default = -9999.0 - ! The depth below which to mask points as land points, for which all fluxes are - ! zeroed out. MASKING_DEPTH is ignored if negative. -CHANNEL_CONFIG = "list" ! default = "none" - ! A parameter that determines which set of channels are - ! restricted to specific widths. Options are: - ! none - All channels have the grid width. - ! global_1deg - Sets 16 specific channels appropriate - ! for a 1-degree model, as used in CM2G. - ! list - Read the channel locations and widths from a - ! text file, like MOM_channel_list in the MOM_SIS - ! test case. - ! file - Read open face widths everywhere from a - ! NetCDF file on the model grid. -CHANNEL_LIST_FILE = "MOM_channels_global_025" ! default = "MOM_channel_list" - ! The file from which the list of narrowed channels is read. - -! === module MOM_verticalGrid === -! Parameters providing information about the vertical grid. -NK = 75 ! [nondim] - ! The number of model layers. - -! === module MOM_tracer_registry === - -! === module MOM_EOS === -DTFREEZE_DP = -7.75E-08 ! [deg C Pa-1] default = 0.0 - ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential - ! temperature with pressure. - -! === module MOM_restart === -PARALLEL_RESTARTFILES = True ! [Boolean] default = False - ! If true, each processor writes its own restart file, otherwise a single - ! restart file is generated - -! === module MOM_tracer_flow_control === -USE_IDEAL_AGE_TRACER = False ! [Boolean] default = False - ! If true, use the ideal_age_example tracer package. - -! === module ideal_age_example === - -! === module MOM_coord_initialization === -COORD_CONFIG = "file" ! - ! This specifies how layers are to be defined: - ! ALE or none - used to avoid defining layers in ALE mode - ! file - read coordinate information from the file - ! specified by (COORD_FILE). - ! BFB - Custom coords for buoyancy-forced basin case - ! based on SST_S, T_BOT and DRHO_DT. - ! linear - linear based on interfaces not layers - ! layer_ref - linear based on layer densities - ! ts_ref - use reference temperature and salinity - ! ts_range - use range of temperature and salinity - ! (T_REF and S_REF) to determine surface density - ! and GINT calculate internal densities. - ! gprime - use reference density (RHO_0) for surface - ! density and GINT calculate internal densities. - ! ts_profile - use temperature and salinity profiles - ! (read from COORD_FILE) to set layer densities. - ! USER - call a user modified routine. -COORD_FILE = "layer_coord.nc" ! - ! The file from which the coordinate densities are read. -REMAP_UV_USING_OLD_ALG = True ! [Boolean] default = True - ! If true, uses the old remapping-via-a-delta-z method for remapping u and v. If - ! false, uses the new method that remaps between grids described by an old and - ! new thickness. -REGRIDDING_COORDINATE_MODE = "HYCOM1" ! default = "LAYER" - ! Coordinate mode for vertical regridding. Choose among the following - ! possibilities: LAYER - Isopycnal or stacked shallow water layers - ! ZSTAR, Z* - stretched geopotential z* - ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf - ! SIGMA - terrain following coordinates - ! RHO - continuous isopycnal - ! HYCOM1 - HyCOM-like hybrid coordinate - ! SLIGHT - stretched coordinates above continuous isopycnal - ! ADAPTIVE - optimize for smooth neutral density surfaces -BOUNDARY_EXTRAPOLATION = True ! [Boolean] default = False - ! When defined, a proper high-order reconstruction scheme is used within - ! boundary cells rather than PCM. E.g., if PPM is used for remapping, a PPM - ! reconstruction will also be used within boundary cells. -ALE_COORDINATE_CONFIG = "HYBRID:hycom1_75_800m.nc,sigma2,FNC1:2,4000,4.5,.01" ! default = "UNIFORM" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter ALE_RESOLUTION - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz -!ALE_RESOLUTION = 7*2.0, 2*2.01, 2.02, 2.03, 2.05, 2.08, 2.11, 2.15, 2.21, 2.2800000000000002, 2.37, 2.48, 2.61, 2.77, 2.95, 3.17, 3.4299999999999997, 3.74, 4.09, 4.49, 4.95, 5.48, 6.07, 6.74, 7.5, 8.34, 9.280000000000001, 10.33, 11.49, 12.77, 14.19, 15.74, 17.450000000000003, 19.31, 21.35, 23.56, 25.97, 28.580000000000002, 31.41, 34.47, 37.77, 41.32, 45.14, 49.25, 53.65, 58.370000000000005, 63.42, 68.81, 74.56, 80.68, 87.21000000000001, 94.14, 101.51, 109.33, 117.62, 126.4, 135.68, 145.5, 155.87, 166.81, 178.35, 190.51, 203.31, 216.78, 230.93, 245.8, 261.42, 277.83 ! [m] - ! The distribution of vertical resolution for the target - ! grid used for Eulerian-like coordinates. For example, - ! in z-coordinate mode, the parameter is a list of level - ! thicknesses (in m). In sigma-coordinate mode, the list - ! is of non-dimensional fractions of the water column. -!TARGET_DENSITIES = 1010.0, 1014.3034, 1017.8088, 1020.843, 1023.5566, 1025.813, 1027.0275, 1027.9114, 1028.6422, 1029.2795, 1029.852, 1030.3762, 1030.8626, 1031.3183, 1031.7486, 1032.1572, 1032.5471, 1032.9207, 1033.2798, 1033.6261, 1033.9608, 1034.2519, 1034.4817, 1034.6774, 1034.8508, 1035.0082, 1035.1533, 1035.2886, 1035.4159, 1035.5364, 1035.6511, 1035.7608, 1035.8661, 1035.9675, 1036.0645, 1036.1554, 1036.2411, 1036.3223, 1036.3998, 1036.4739, 1036.5451, 1036.6137, 1036.68, 1036.7441, 1036.8062, 1036.8526, 1036.8874, 1036.9164, 1036.9418, 1036.9647, 1036.9857, 1037.0052, 1037.0236, 1037.0409, 1037.0574, 1037.0738, 1037.0902, 1037.1066, 1037.123, 1037.1394, 1037.1558, 1037.1722, 1037.1887, 1037.206, 1037.2241, 1037.2435, 1037.2642, 1037.2866, 1037.3112, 1037.3389, 1037.3713, 1037.4118, 1037.475, 1037.6332, 1037.8104, 1038.0 ! [m] - ! HYBRID target densities for interfaces -REGRID_COMPRESSIBILITY_FRACTION = 0.01 ! [nondim] default = 0.0 - ! When interpolating potential density profiles we can add some artificial - ! compressibility solely to make homogeneous regions appear stratified. -MAXIMUM_INT_DEPTH_CONFIG = "FNC1:5,8000.0,1.0,.01" ! default = "NONE" - ! Determines how to specify the maximum interface depths. - ! Valid options are: - ! NONE - there are no maximum interface depths - ! PARAM - use the vector-parameter MAXIMUM_INTERFACE_DEPTHS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAXIMUM_INT_DEPTHS = 0.0, 5.0, 12.75, 23.25, 36.49, 52.480000000000004, 71.22, 92.71000000000001, 116.94000000000001, 143.92000000000002, 173.65, 206.13, 241.36, 279.33000000000004, 320.05000000000007, 363.5200000000001, 409.7400000000001, 458.7000000000001, 510.4100000000001, 564.8700000000001, 622.0800000000002, 682.0300000000002, 744.7300000000002, 810.1800000000003, 878.3800000000003, 949.3300000000004, 1023.0200000000004, 1099.4600000000005, 1178.6500000000005, 1260.5900000000006, 1345.2700000000007, 1432.7000000000007, 1522.8800000000008, 1615.8100000000009, 1711.490000000001, 1809.910000000001, 1911.080000000001, 2015.0000000000011, 2121.670000000001, 2231.080000000001, 2343.2400000000007, 2458.1500000000005, 2575.8100000000004, 2696.2200000000003, 2819.3700000000003, 2945.2700000000004, 3073.9200000000005, 3205.3200000000006, 3339.4600000000005, 3476.3500000000004, 3615.9900000000002, 3758.38, 3903.52, 4051.4, 4202.03, 4355.41, 4511.54, 4670.41, 4832.03, 4996.4, 5163.5199999999995, 5333.379999999999, 5505.989999999999, 5681.3499999999985, 5859.459999999998, 6040.319999999998, 6223.919999999998, 6410.269999999999, 6599.369999999999, 6791.219999999999, 6985.8099999999995, 7183.15, 7383.24, 7586.08, 7791.67, 8000.0 - ! The list of maximum depths for each interface. -MAX_LAYER_THICKNESS_CONFIG = "FNC1:400,31000.0,0.1,.01" ! default = "NONE" - ! Determines how to specify the maximum layer thicknesses. - ! Valid options are: - ! NONE - there are no maximum layer thicknesses - ! PARAM - use the vector-parameter MAX_LAYER_THICKNESS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAX_LAYER_THICKNESS = 400.0, 409.63, 410.32, 410.75, 411.07, 411.32, 411.52, 411.7, 411.86, 412.0, 412.13, 412.24, 412.35, 412.45, 412.54, 412.63, 412.71, 412.79, 412.86, 412.93, 413.0, 413.06, 413.12, 413.18, 413.24, 413.29, 413.34, 413.39, 413.44, 413.49, 413.54, 413.58, 413.62, 413.67, 413.71, 413.75, 413.78, 413.82, 413.86, 413.9, 413.93, 413.97, 414.0, 414.03, 414.06, 414.1, 414.13, 414.16, 414.19, 414.22, 414.24, 414.27, 414.3, 414.33, 414.35, 414.38, 414.41, 414.43, 414.46, 414.48, 414.51, 414.53, 414.55, 414.58, 414.6, 414.62, 414.65, 414.67, 414.69, 414.71, 414.73, 414.75, 414.77, 414.79, 414.83 ! [m] - ! The list of maximum thickness for each layer. -REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" - ! This sets the reconstruction scheme used for vertical remapping for all - ! variables. It can be one of the following schemes: PCM (1st-order - ! accurate) - ! PLM (2nd-order accurate) - ! PPM_H4 (3rd-order accurate) - ! PPM_IH4 (3rd-order accurate) - ! PQM_IH4IH3 (4th-order accurate) - ! PQM_IH6IH5 (5th-order accurate) - -! === module MOM_grid === -! Parameters providing information about the lateral grid. - -! === module MOM_state_initialization === -INIT_LAYERS_FROM_Z_FILE = True ! [Boolean] default = False - ! If true, initialize the layer thicknesses, temperatures, and salinities from a - ! Z-space file on a latitude-longitude grid. - -! === module MOM_initialize_layers_from_Z === -TEMP_SALT_Z_INIT_FILE = "MOM6_IC_TS.nc" ! default = "temp_salt_z.nc" - ! The name of the z-space input file used to initialize - ! temperatures (T) and salinities (S). If T and S are not - ! in the same file, TEMP_Z_INIT_FILE and SALT_Z_INIT_FILE - ! must be set. -Z_INIT_FILE_PTEMP_VAR = "temp" ! default = "ptemp" - ! The name of the potential temperature variable in - ! TEMP_Z_INIT_FILE. -Z_INIT_FILE_SALT_VAR = "salt" ! default = "salt" - ! The name of the salinity variable in - ! SALT_Z_INIT_FILE. - -Z_INIT_ALE_REMAPPING = True ! [Boolean] default = False - ! If True, then remap straight to model coordinate from file. -Z_INIT_REMAP_OLD_ALG = True ! [Boolean] default = True - ! If false, uses the preferred remapping algorithm for initialization. If true, - ! use an older, less robust algorithm for remapping. - -! === module MOM_diag_mediator === -!Jiande NUM_DIAG_COORDS = 2 ! default = 1 -NUM_DIAG_COORDS = 1 - ! The number of diagnostic vertical coordinates to use. - ! For each coordinate, an entry in DIAG_COORDS must be provided. -!Jiande DIAG_COORDS = "z Z ZSTAR", "rho2 RHO2 RHO" ! -DIAG_COORDS = "z Z ZSTAR" - ! A list of string tuples associating diag_table modules to - ! a coordinate definition used for diagnostics. Each string - ! is of the form "MODULE_SUFFIX,PARAMETER_SUFFIX,COORDINATE_NAME". -DIAG_COORD_DEF_Z="FILE:@[MOM6_DIAG_COORD_DEF_Z_FILE],interfaces=zw" -DIAG_MISVAL = @[MOM6_DIAG_MISVAL] -!DIAG_COORD_DEF_RHO2 = "FILE:diag_rho2.nc,interfaces=rho2" ! default = "WOA09" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter DIAG_COORD_RES_RHO2 - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz - -! === module MOM_MEKE === -USE_MEKE = True ! [Boolean] default = False - ! If true, turns on the MEKE scheme which calculates a sub-grid mesoscale eddy - ! kinetic energy budget. -MEKE_GMCOEFF = 1.0 ! [nondim] default = -1.0 - ! The efficiency of the conversion of potential energy into MEKE by the - ! thickness mixing parameterization. If MEKE_GMCOEFF is negative, this - ! conversion is not used or calculated. -MEKE_BGSRC = 1.0E-13 ! [W kg-1] default = 0.0 - ! A background energy source for MEKE. -MEKE_KHMEKE_FAC = 1.0 ! [nondim] default = 0.0 - ! A factor that maps MEKE%Kh to Kh for MEKE itself. -MEKE_ALPHA_RHINES = 0.15 ! [nondim] default = 0.05 - ! If positive, is a coefficient weighting the Rhines scale in the expression for - ! mixing length used in MEKE-derived diffusivity. -MEKE_ALPHA_EADY = 0.15 ! [nondim] default = 0.05 - ! If positive, is a coefficient weighting the Eady length scale in the - ! expression for mixing length used in MEKE-derived diffusivity. - -! === module MOM_lateral_mixing_coeffs === -USE_VARIABLE_MIXING = True ! [Boolean] default = False - ! If true, the variable mixing code will be called. This allows diagnostics to - ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or - ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter - ! file. -RESOLN_SCALED_KH = True ! [Boolean] default = False - ! If true, the Laplacian lateral viscosity is scaled away when the first - ! baroclinic deformation radius is well resolved. -RESOLN_SCALED_KHTH = True ! [Boolean] default = False - ! If true, the interface depth diffusivity is scaled away when the first - ! baroclinic deformation radius is well resolved. -KHTR_SLOPE_CFF = 0.25 ! [nondim] default = 0.0 - ! The nondimensional coefficient in the Visbeck formula for the epipycnal tracer - ! diffusivity -USE_STORED_SLOPES = True ! [Boolean] default = False - ! If true, the isopycnal slopes are calculated once and stored for re-use. This - ! uses more memory but avoids calling the equation of state more times than - ! should be necessary. -INTERPOLATE_RES_FN = False ! [Boolean] default = True - ! If true, interpolate the resolution function to the velocity points from the - ! thickness points; otherwise interpolate the wave speed and calculate the - ! resolution function independently at each point. -GILL_EQUATORIAL_LD = True ! [Boolean] default = False - ! If true, uses Gill's definition of the baroclinic equatorial deformation - ! radius, otherwise, if false, use Pedlosky's definition. These definitions - ! differ by a factor of 2 in front of the beta term in the denominator. Gill's - ! is the more appropriate definition. -INTERNAL_WAVE_SPEED_BETTER_EST = False ! [Boolean] default = True - ! If true, use a more robust estimate of the first mode wave speed as the - ! starting point for iterations. - -! === module MOM_set_visc === -CHANNEL_DRAG = True ! [Boolean] default = False - ! If true, the bottom drag is exerted directly on each layer proportional to the - ! fraction of the bottom it overlies. -PRANDTL_TURB = 1.25 ! [nondim] default = 1.0 - ! The turbulent Prandtl number applied to shear instability. -HBBL = 10.0 ! [m] - ! The thickness of a bottom boundary layer with a viscosity of KVBBL if - ! BOTTOMDRAGLAW is not defined, or the thickness over which near-bottom - ! velocities are averaged for the drag law if BOTTOMDRAGLAW is defined but - ! LINEAR_DRAG is not. -DRAG_BG_VEL = 0.1 ! [m s-1] default = 0.0 - ! DRAG_BG_VEL is either the assumed bottom velocity (with LINEAR_DRAG) or an - ! unresolved velocity that is combined with the resolved velocity to estimate - ! the velocity magnitude. DRAG_BG_VEL is only used when BOTTOMDRAGLAW is - ! defined. -BBL_USE_EOS = True ! [Boolean] default = False - ! If true, use the equation of state in determining the properties of the bottom - ! boundary layer. Otherwise use the layer target potential densities. -BBL_THICK_MIN = 0.1 ! [m] default = 0.0 - ! The minimum bottom boundary layer thickness that can be used with - ! BOTTOMDRAGLAW. This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum - ! near-bottom viscosity. -KV = 1.0E-04 ! [m2 s-1] - ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 - ! m2 s-1, may be used. -KV_BBL_MIN = 0.0 ! [m2 s-1] default = 1.0E-04 - ! The minimum viscosities in the bottom boundary layer. -KV_TBL_MIN = 0.0 ! [m2 s-1] default = 1.0E-04 - ! The minimum viscosities in the top boundary layer. - -! === module MOM_thickness_diffuse === -KHTH_MAX_CFL = 0.1 ! [nondimensional] default = 0.8 - ! The maximum value of the local diffusive CFL ratio that is permitted for the - ! thickness diffusivity. 1.0 is the marginally unstable value in a pure layered - ! model, but much smaller numbers (e.g. 0.1) seem to work better for ALE-based - ! models. -USE_GM_WORK_BUG = True ! [Boolean] default = True - ! If true, compute the top-layer work tendency on the u-grid with the incorrect - ! sign, for legacy reproducibility. - -! === module MOM_continuity === - -! === module MOM_continuity_PPM === -ETA_TOLERANCE = 1.0E-06 ! [m] default = 3.75E-09 - ! The tolerance for the differences between the barotropic and baroclinic - ! estimates of the sea surface height due to the fluxes through each face. The - ! total tolerance for SSH is 4 times this value. The default is - ! 0.5*NK*ANGSTROM, and this should not be set less than about - ! 10^-15*MAXIMUM_DEPTH. -ETA_TOLERANCE_AUX = 0.001 ! [m] default = 1.0E-06 - ! The tolerance for free-surface height discrepancies between the barotropic - ! solution and the sum of the layer thicknesses when calculating the auxiliary - ! corrected velocities. By default, this is the same as ETA_TOLERANCE, but can - ! be made larger for efficiency. - -! === module MOM_CoriolisAdv === -CORIOLIS_SCHEME = "SADOURNY75_ENSTRO" ! default = "SADOURNY75_ENERGY" - ! CORIOLIS_SCHEME selects the discretization for the Coriolis terms. Valid - ! values are: - ! SADOURNY75_ENERGY - Sadourny, 1975; energy cons. - ! ARAKAWA_HSU90 - Arakawa & Hsu, 1990 - ! SADOURNY75_ENSTRO - Sadourny, 1975; enstrophy cons. - ! ARAKAWA_LAMB81 - Arakawa & Lamb, 1981; En. + Enst. - ! ARAKAWA_LAMB_BLEND - A blend of Arakawa & Lamb with - ! Arakawa & Hsu and Sadourny energy -BOUND_CORIOLIS = True ! [Boolean] default = False - ! If true, the Coriolis terms at u-points are bounded by the four estimates of - ! (f+rv)v from the four neighboring v-points, and similarly at v-points. This - ! option would have no effect on the SADOURNY Coriolis scheme if it were - ! possible to use centered difference thickness fluxes. - -! === module MOM_PressureForce === - -! === module MOM_PressureForce_AFV === -MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False - ! If true, use mass weighting when interpolating T/S for integrals near the - ! bathymetry in AFV pressure gradient calculations. - -! === module MOM_hor_visc === -LAPLACIAN = True ! [Boolean] default = False - ! If true, use a Laplacian horizontal viscosity. -AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the cube of the grid spacing to - ! calculate the biharmonic viscosity. The final viscosity is the largest of this - ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. -SMAGORINSKY_AH = True ! [Boolean] default = False - ! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity. -SMAG_BI_CONST = 0.06 ! [nondim] default = 0.0 - ! The nondimensional biharmonic Smagorinsky constant, typically 0.015 - 0.06. -USE_LAND_MASK_FOR_HVISC = False ! [Boolean] default = False - ! If true, use Use the land mask for the computation of thicknesses at velocity - ! locations. This eliminates the dependence on arbitrary values over land or - ! outside of the domain. Default is False in order to maintain answers with - ! legacy experiments but should be changed to True for new experiments. - -! === module MOM_vert_friction === -HMIX_FIXED = 0.5 ! [m] - ! The prescribed depth over which the near-surface viscosity and diffusivity are - ! elevated when the bulk mixed layer is not used. -KVML = 1.0E-04 ! [m2 s-1] default = 1.0E-04 - ! The kinematic viscosity in the mixed layer. A typical value is ~1e-2 m2 s-1. - ! KVML is not used if BULKMIXEDLAYER is true. The default is set by KV. -MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 - ! The maximum velocity allowed before the velocity components are truncated. - -! === module MOM_PointAccel === -U_TRUNC_FILE = "U_velocity_truncations" ! default = "" - ! The absolute path to a file into which the accelerations leading to zonal - ! velocity truncations are written. Undefine this for efficiency if this - ! diagnostic is not needed. -V_TRUNC_FILE = "V_velocity_truncations" ! default = "" - ! The absolute path to a file into which the accelerations leading to meridional - ! velocity truncations are written. Undefine this for efficiency if this - ! diagnostic is not needed. - -! === module MOM_barotropic === -BOUND_BT_CORRECTION = True ! [Boolean] default = False - ! If true, the corrective pseudo mass-fluxes into the barotropic solver are - ! limited to values that require less than maxCFL_BT_cont to be accommodated. -BT_PROJECT_VELOCITY = True ! [Boolean] default = False - ! If true, step the barotropic velocity first and project out the velocity - ! tendency by 1+BEBT when calculating the transport. The default (false) is to - ! use a predictor continuity step to find the pressure field, and then to do a - ! corrector continuity step using a weighted average of the old and new - ! velocities, with weights of (1-BEBT) and BEBT. -DYNAMIC_SURFACE_PRESSURE = True ! [Boolean] default = False - ! If true, add a dynamic pressure due to a viscous ice shelf, for instance. -BEBT = 0.2 ! [nondim] default = 0.1 - ! BEBT determines whether the barotropic time stepping uses the forward-backward - ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range - ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 - ! (for a backward Euler treatment). In practice, BEBT must be greater than about - ! 0.05. -DTBT = -0.9 ! [s or nondim] default = -0.98 - ! The barotropic time step, in s. DTBT is only used with the split explicit time - ! stepping. To set the time step automatically based the maximum stable value - ! use 0, or a negative value gives the fraction of the stable value. Setting - ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will - ! actually be used is an integer fraction of DT, rounding down. -BT_USE_OLD_CORIOLIS_BRACKET_BUG = True ! [Boolean] default = False - ! If True, use an order of operations that is not bitwise rotationally symmetric - ! in the meridional Coriolis term of the barotropic solver. - -! === module MOM_mixed_layer_restrat === -MIXEDLAYER_RESTRAT = True ! [Boolean] default = False - ! If true, a density-gradient dependent re-stratifying flow is imposed in the - ! mixed layer. Can be used in ALE mode without restriction but in layer mode can - ! only be used if BULKMIXEDLAYER is true. -FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0 - ! A nondimensional coefficient that is proportional to the ratio of the - ! deformation radius to the dominant lengthscale of the submesoscale mixed layer - ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic - ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of - ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. - ! (2010) -MLE_FRONT_LENGTH = 500.0 ! [m] default = 0.0 - ! If non-zero, is the frontal-length scale used to calculate the upscaling of - ! buoyancy gradients that is otherwise represented by the parameter - ! FOX_KEMPER_ML_RESTRAT_COEF. If MLE_FRONT_LENGTH is non-zero, it is recommended - ! to set FOX_KEMPER_ML_RESTRAT_COEF=1.0. -MLE_USE_PBL_MLD = True ! [Boolean] default = False - ! If true, the MLE parameterization will use the mixed-layer depth provided by - ! the active PBL parameterization. If false, MLE will estimate a MLD based on a - ! density difference with the surface using the parameter MLE_DENSITY_DIFF. -MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 - ! The time-scale for a running-mean filter applied to the mixed-layer depth used - ! in the MLE restratification parameterization. When the MLD deepens below the - ! current running-mean the running-mean is instantaneously set to the current - ! MLD. - -! === module MOM_diabatic_driver === -! The following parameters are used for diabatic processes. -ENERGETICS_SFC_PBL = True ! [Boolean] default = False - ! If true, use an implied energetics planetary boundary layer scheme to - ! determine the diffusivity and viscosity in the surface boundary layer. -EPBL_IS_ADDITIVE = False ! [Boolean] default = True - ! If true, the diffusivity from ePBL is added to all other diffusivities. - ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. - -! === module MOM_CVMix_KPP === -! This is the MOM wrapper to CVMix:KPP -! See http://cvmix.github.io/ - -! === module MOM_tidal_mixing === -! Vertical Tidal Mixing Parameterization -INT_TIDE_DISSIPATION = True ! [Boolean] default = False - ! If true, use an internal tidal dissipation scheme to drive diapycnal mixing, - ! along the lines of St. Laurent et al. (2002) and Simmons et al. (2004). -INT_TIDE_PROFILE = "POLZIN_09" ! default = "STLAURENT_02" - ! INT_TIDE_PROFILE selects the vertical profile of energy dissipation with - ! INT_TIDE_DISSIPATION. Valid values are: - ! STLAURENT_02 - Use the St. Laurent et al exponential - ! decay profile. - ! POLZIN_09 - Use the Polzin WKB-stretched algebraic - ! decay profile. -INT_TIDE_DECAY_SCALE = 300.3003003003003 ! [m] default = 500.0 - ! The decay scale away from the bottom for tidal TKE with the new coding when - ! INT_TIDE_DISSIPATION is used. -KAPPA_ITIDES = 6.28319E-04 ! [m-1] default = 6.283185307179586E-04 - ! A topographic wavenumber used with INT_TIDE_DISSIPATION. The default is 2pi/10 - ! km, as in St.Laurent et al. 2002. -KAPPA_H2_FACTOR = 0.84 ! [nondim] default = 1.0 - ! A scaling factor for the roughness amplitude with INT_TIDE_DISSIPATION. -TKE_ITIDE_MAX = 0.1 ! [W m-2] default = 1000.0 - ! The maximum internal tide energy source available to mix above the bottom - ! boundary layer with INT_TIDE_DISSIPATION. -READ_TIDEAMP = True ! [Boolean] default = False - ! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude - ! with INT_TIDE_DISSIPATION. -TIDEAMP_FILE = "tidal_amplitude.v20140616.nc" ! default = "tideamp.nc" - ! The path to the file containing the spatially varying tidal amplitudes with - ! INT_TIDE_DISSIPATION. -H2_FILE = "ocean_topog.nc" ! - ! The path to the file containing the sub-grid-scale topographic roughness - ! amplitude with INT_TIDE_DISSIPATION. - -! === module MOM_CVMix_conv === -! Parameterization of enhanced mixing due to convection via CVMix - -! === module MOM_geothermal === -GEOTHERMAL_SCALE = 1.0 ! [W m-2 or various] default = 0.0 - ! The constant geothermal heat flux, a rescaling factor for the heat flux read - ! from GEOTHERMAL_FILE, or 0 to disable the geothermal heating. -GEOTHERMAL_FILE = "geothermal_davies2013_v1.nc" ! default = "" - ! The file from which the geothermal heating is to be read, or blank to use a - ! constant heating rate. -GEOTHERMAL_VARNAME = "geothermal_hf" ! default = "geo_heat" - ! The name of the geothermal heating variable in GEOTHERMAL_FILE. - -! === module MOM_set_diffusivity === -BBL_MIXING_AS_MAX = False ! [Boolean] default = True - ! If true, take the maximum of the diffusivity from the BBL mixing and the other - ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added. -USE_LOTW_BBL_DIFFUSIVITY = True ! [Boolean] default = False - ! If true, uses a simple, imprecise but non-coordinate dependent, model of BBL - ! mixing diffusivity based on Law of the Wall. Otherwise, uses the original BBL - ! scheme. -SIMPLE_TKE_TO_KD = True ! [Boolean] default = False - ! If true, uses a simple estimate of Kd/TKE that will work for arbitrary - ! vertical coordinates. If false, calculates Kd/TKE and bounds based on exact - ! energetics for an isopycnal layer-formulation. - -! === module MOM_bkgnd_mixing === -! Adding static vertical background mixing coefficients -KD = 1.5E-05 ! [m2 s-1] - ! The background diapycnal diffusivity of density in the interior. Zero or the - ! molecular value, ~1e-7 m2 s-1, may be used. -KD_MIN = 2.0E-06 ! [m2 s-1] default = 1.5E-07 - ! The minimum diapycnal diffusivity. -HENYEY_IGW_BACKGROUND = True ! [Boolean] default = False - ! If true, use a latitude-dependent scaling for the near surface background - ! diffusivity, as described in Harrison & Hallberg, JPO 2008. -KD_MAX = 0.1 ! [m2 s-1] default = -1.0 - ! The maximum permitted increment for the diapycnal diffusivity from TKE-based - ! parameterizations, or a negative value for no limit. - -! === module MOM_kappa_shear === -! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 -USE_JACKSON_PARAM = True ! [Boolean] default = False - ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing - ! parameterization. -MAX_RINO_IT = 25 ! [nondim] default = 50 - ! The maximum number of iterations that may be used to estimate the Richardson - ! number driven mixing. -VERTEX_SHEAR = False ! [Boolean] default = False - ! If true, do the calculations of the shear-driven mixing - ! at the cell vertices (i.e., the vorticity points). -KAPPA_SHEAR_ITER_BUG = True ! [Boolean] default = True - ! If true, use an older, dimensionally inconsistent estimate of the derivative - ! of diffusivity with energy in the Newton's method iteration. The bug causes - ! undercorrections when dz > 1 m. -KAPPA_SHEAR_ALL_LAYER_TKE_BUG = True ! [Boolean] default = True - ! If true, report back the latest estimate of TKE instead of the time average - ! TKE when there is mass in all layers. Otherwise always report the time - ! averaged TKE, as is currently done when there are some massless layers. - -! === module MOM_CVMix_shear === -! Parameterization of shear-driven turbulence via CVMix (various options) - -! === module MOM_CVMix_ddiff === -! Parameterization of mixing due to double diffusion processes via CVMix - -! === module MOM_diabatic_aux === -! The following parameters are used for auxiliary diabatic processes. -PRESSURE_DEPENDENT_FRAZIL = False ! [Boolean] default = False - ! If true, use a pressure dependent freezing temperature when making frazil. The - ! default is false, which will be faster but is inappropriate with ice-shelf - ! cavities. -VAR_PEN_SW = True ! [Boolean] default = False - ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine - ! the e-folding depth of incoming short wave radiation. -CHL_FILE = @[CHLCLIM] ! - ! CHL_FILE is the file containing chl_a concentrations in the variable CHL_A. It - ! is used when VAR_PEN_SW and CHL_FROM_FILE are true. -CHL_VARNAME = "chlor_a" ! default = "CHL_A" - ! Name of CHL_A variable in CHL_FILE. - -! === module MOM_energetic_PBL === -ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0 - ! When setting the decay scale for turbulence, use this fraction of the absolute - ! rotation rate blended with the local value of f, as sqrt((1-of)*f^2 + - ! of*4*omega^2). -TKE_DECAY = 0.01 ! [nondim] default = 2.5 - ! TKE_DECAY relates the vertical rate of decay of the TKE available for - ! mechanical entrainment to the natural Ekman depth. -EPBL_MSTAR_SCHEME = "OM4" ! default = "CONSTANT" - ! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are: - ! CONSTANT - Use a fixed mstar given by MSTAR - ! OM4 - Use L_Ekman/L_Obukhov in the sabilizing limit, as in OM4 - ! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018. -MSTAR_CAP = 10.0 ! [nondim] default = -1.0 - ! If this value is positive, it sets the maximum value of mstar allowed in ePBL. - ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT). -MSTAR2_COEF1 = 0.29 ! [nondim] default = 0.3 - ! Coefficient in computing mstar when rotation and stabilizing effects are both - ! important (used if EPBL_MSTAR_SCHEME = OM4). -MSTAR2_COEF2 = 0.152 ! [nondim] default = 0.085 - ! Coefficient in computing mstar when only rotation limits the total mixing - ! (used if EPBL_MSTAR_SCHEME = OM4) -NSTAR = 0.06 ! [nondim] default = 0.2 - ! The portion of the buoyant potential energy imparted by surface fluxes that is - ! available to drive entrainment at the base of mixed layer when that energy is - ! positive. -EPBL_MLD_BISECTION = True ! [Boolean] default = False - ! If true, use bisection with the iterative determination of the self-consistent - ! mixed layer depth. Otherwise use the false position after a maximum and - ! minimum bound have been evaluated and the returned value or bisection before - ! this. -MSTAR_CONV_ADJ = 0.667 ! [nondim] default = 0.0 - ! Coefficient used for reducing mstar during convection due to reduction of - ! stable density gradient. -USE_MLD_ITERATION = True ! [Boolean] default = False - ! A logical that specifies whether or not to use the distance to the bottom of - ! the actively turbulent boundary layer to help set the EPBL length scale. -EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1 - ! A scale for the mixing length in the transition layer at the edge of the - ! boundary layer as a fraction of the boundary layer thickness. -MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0 - ! The exponent applied to the ratio of the distance to the MLD and the MLD depth - ! which determines the shape of the mixing length. This is only used if - ! USE_MLD_ITERATION is True. -USE_LA_LI2016 = @[MOM6_USE_LI2016] ! [nondim] default = False - ! A logical to use the Li et al. 2016 (submitted) formula to determine the - ! Langmuir number. -USE_WAVES = @[MOM6_USE_WAVES] ! [Boolean] default = False - ! If true, enables surface wave modules. -WAVE_METHOD = "SURFACE_BANDS" ! default = "EMPTY" - ! Choice of wave method, valid options include: - ! TEST_PROFILE - Prescribed from surface Stokes drift - ! and a decay wavelength. - ! SURFACE_BANDS - Computed from multiple surface values - ! and decay wavelengths. - ! DHH85 - Uses Donelan et al. 1985 empirical - ! wave spectrum with prescribed values. - ! LF17 - Infers Stokes drift profile from wind - ! speed following Li and Fox-Kemper 2017. -SURFBAND_SOURCE = "COUPLER" ! default = "EMPTY" - ! Choice of SURFACE_BANDS data mode, valid options include: - ! DATAOVERRIDE - Read from NetCDF using FMS DataOverride. - ! COUPLER - Look for variables from coupler pass - ! INPUT - Testing with fixed values. -STK_BAND_COUPLER = 3 ! default = 1 - ! STK_BAND_COUPLER is the number of Stokes drift bands in the coupler. This has - ! to be consistent with the number of Stokes drift bands in WW3, or the model - ! will fail. -SURFBAND_WAVENUMBERS = 0.04, 0.11, 0.3305 ! [rad/m] default = 0.12566 - ! Central wavenumbers for surface Stokes drift bands. -EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" - ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. - ! Valid values are: - ! NONE - Do not do any extra mixing due to Langmuir turbulence - ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir - ! turbulence - ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other - ! contributions -LT_ENHANCE_COEF = 0.044 ! [nondim] default = 0.447 - ! Coefficient for Langmuir enhancement of mstar -LT_ENHANCE_EXP = -1.5 ! [nondim] default = -1.33 - ! Exponent for Langmuir enhancementt of mstar -LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 - ! Coefficient for modification of Langmuir number due to MLD approaching Ekman - ! depth. -LT_MOD_LAC4 = 0.0 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! stable Obukhov depth. -LT_MOD_LAC5 = 0.22 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! unstable Obukhov depth. - -! === module MOM_regularize_layers === - -! === module MOM_opacity === -PEN_SW_NBANDS = 3 ! default = 1 - ! The number of bands of penetrating shortwave radiation. - -! === module MOM_tracer_advect === -TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" - ! The horizontal transport scheme for tracers: - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) - ! PPM - Piecewise Parabolic Method (Colella-Woodward) - -! === module MOM_tracer_hor_diff === -CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False - ! If true, use enough iterations the diffusion to ensure that the diffusive - ! equivalent of the CFL limit is not violated. If false, always use the greater - ! of 1 or MAX_TR_DIFFUSION_CFL iteration. - -! === module MOM_neutral_diffusion === -! This module implements neutral diffusion of tracers - -! === module MOM_lateral_boundary_diffusion === -! This module implements lateral diffusion of tracers near boundaries - -! === module MOM_sum_output === -MAXTRUNC = 100000 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 - ! to stop if there is any truncation of velocities. -ENERGYSAVEDAYS = 1.00 ! [days] default = 1.0 - ! The interval in units of TIMEUNIT between saves of the energies of the run and - ! other globally summed diagnostics. - -! === module ocean_model_init === - -! === module MOM_oda_incupd === -ODA_INCUPD = @[ODA_INCUPD] ! [Boolean] default = False - ! If true, oda incremental updates will be applied - ! everywhere in the domain. -ODA_INCUPD_FILE = "mom6_increment.nc" ! The name of the file with the T,S,h increments. - -ODA_TEMPINC_VAR = "Temp" ! default = "ptemp_inc" - ! The name of the potential temperature inc. variable in - ! ODA_INCUPD_FILE. -ODA_SALTINC_VAR = "Salt" ! default = "sal_inc" - ! The name of the salinity inc. variable in - ! ODA_INCUPD_FILE. -ODA_THK_VAR = "h" ! default = "h" - ! The name of the int. depth inc. variable in - ! ODA_INCUPD_FILE. -ODA_INCUPD_UV = true ! -ODA_UINC_VAR = "u" ! default = "u_inc" - ! The name of the zonal vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -ODA_VINC_VAR = "v" ! default = "v_inc" - ! The name of the meridional vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -ODA_INCUPD_NHOURS = @[ODA_INCUPD_NHOURS] ! default=3.0 - -! === module MOM_surface_forcing === -OCEAN_SURFACE_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the surface velocity field that is - ! returned to the coupler. Valid values include - ! 'A', 'B', or 'C'. - -MAX_P_SURF = 0.0 ! [Pa] default = -1.0 - ! The maximum surface pressure that can be exerted by the atmosphere and - ! floating sea-ice or ice shelves. This is needed because the FMS coupling - ! structure does not limit the water that can be frozen out of the ocean and the - ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a - ! negative value is used. -WIND_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the input wind stress field. Valid - ! values are 'A', 'B', or 'C'. -CD_TIDES = 0.0018 ! [nondim] default = 1.0E-04 - ! The drag coefficient that applies to the tides. -GUST_CONST = 0.0 ! [Pa] default = 0.02 - ! The background gustiness in the winds. -FIX_USTAR_GUSTLESS_BUG = False ! [Boolean] default = False - ! If true correct a bug in the time-averaging of the gustless wind friction - ! velocity -USE_RIGID_SEA_ICE = True ! [Boolean] default = False - ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that - ! resist vertical motion. -SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 - ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit - ! rigidity -LIQUID_RUNOFF_FROM_DATA = @[MOM6_RIVER_RUNOFF] ! [Boolean] default = False - ! If true, allows liquid river runoff to be specified via - ! the data_table using the component name 'OCN'. -! === module ocean_stochastics === -DO_SPPT = @[DO_OCN_SPPT] ! [Boolean] default = False - ! If true perturb the diabatic tendencies in MOM_diabatic_driver -PERT_EPBL = @[PERT_EPBL] ! [Boolean] default = False - ! If true perturb the KE dissipation and destruction in MOM_energetic_PBL -! === module MOM_restart === -RESTART_CHECKSUMS_REQUIRED = False -! === module MOM_file_parser === diff --git a/parm/ufs/mom6/MOM_input_template_050 b/parm/ufs/mom6/MOM_input_template_050 deleted file mode 100644 index 4c39198c02..0000000000 --- a/parm/ufs/mom6/MOM_input_template_050 +++ /dev/null @@ -1,947 +0,0 @@ -! This input file provides the adjustable run-time parameters for version 6 of the Modular Ocean Model (MOM6). -! Where appropriate, parameters use usually given in MKS units. - -! This particular file is for the example in ice_ocean_SIS2/OM4_05. - -! This MOM_input file typically contains only the non-default values that are needed to reproduce this example. -! A full list of parameters for this example can be found in the corresponding MOM_parameter_doc.all file -! which is generated by the model at run-time. -! === module MOM_domains === -TRIPOLAR_N = True ! [Boolean] default = False - ! Use tripolar connectivity at the northern edge of the domain. With - ! TRIPOLAR_N, NIGLOBAL must be even. -NIGLOBAL = @[NX_GLB] ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NJGLOBAL = @[NY_GLB] ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NIHALO = 4 ! default = 4 - ! The number of halo points on each side in the x-direction. With - ! STATIC_MEMORY_ this is set as NIHALO_ in MOM_memory.h at compile time; without - ! STATIC_MEMORY_ the default is NIHALO_ in MOM_memory.h (if defined) or 2. -NJHALO = 4 ! default = 4 - ! The number of halo points on each side in the y-direction. With - ! STATIC_MEMORY_ this is set as NJHALO_ in MOM_memory.h at compile time; without - ! STATIC_MEMORY_ the default is NJHALO_ in MOM_memory.h (if defined) or 2. -! LAYOUT = 21, 20 ! - ! The processor layout that was actually used. -! IO_LAYOUT = 1, 1 ! default = 1 - ! The processor layout to be used, or 0,0 to automatically set the io_layout to - ! be the same as the layout. - -! === module MOM === -USE_REGRIDDING = True ! [Boolean] default = False - ! If True, use the ALE algorithm (regridding/remapping). If False, use the - ! layered isopycnal algorithm. -THICKNESSDIFFUSE = True ! [Boolean] default = False - ! If true, interface heights are diffused with a coefficient of KHTH. -THICKNESSDIFFUSE_FIRST = True ! [Boolean] default = False - ! If true, do thickness diffusion before dynamics. This is only used if - ! THICKNESSDIFFUSE is true. -DT = @[DT_DYNAM_MOM6] ! [s] - ! The (baroclinic) dynamics time step. The time-step that is actually used will - ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode - ! or the coupling timestep in coupled mode.) -DT_THERM = @[DT_THERM_MOM6] ! [s] default = 1800.0 - ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be - ! an integer multiple of DT and less than the forcing or coupling time-step, - ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer - ! multiple of the coupling timestep. By default DT_THERM is set to DT. -THERMO_SPANS_COUPLING = @[MOM6_THERMO_SPAN] ! [Boolean] default = False - ! If true, the MOM will take thermodynamic and tracer timesteps that can be - ! longer than the coupling timestep. The actual thermodynamic timestep that is - ! used in this case is the largest integer multiple of the coupling timestep - ! that is less than or equal to DT_THERM. -HFREEZE = 20.0 ! [m] default = -1.0 - ! If HFREEZE > 0, melt potential will be computed. The actual depth - ! over which melt potential is computed will be min(HFREEZE, OBLD) - ! where OBLD is the boundary layer depth. If HFREEZE <= 0 (default) - ! melt potential will not be computed. -USE_PSURF_IN_EOS = False ! [Boolean] default = False - ! If true, always include the surface pressure contributions in equation of - ! state calculations. -FRAZIL = True ! [Boolean] default = False - ! If true, water freezes if it gets too cold, and the accumulated heat deficit - ! is returned in the surface state. FRAZIL is only used if - ! ENABLE_THERMODYNAMICS is true. -DO_GEOTHERMAL = True ! [Boolean] default = False - ! If true, apply geothermal heating. -BOUND_SALINITY = True ! [Boolean] default = False - ! If true, limit salinity to being positive. (The sea-ice model may ask for more - ! salt than is available and drive the salinity negative otherwise.) -MIN_SALINITY = 0.01 ! [PPT] default = 0.01 - ! The minimum value of salinity when BOUND_SALINITY=True. The default is 0.01 - ! for backward compatibility but ideally should be 0. -C_P = 3992.0 ! [J kg-1 K-1] default = 3991.86795711963 - ! The heat capacity of sea water, approximated as a constant. This is only used - ! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10 - ! definition of conservative temperature. -CHECK_BAD_SURFACE_VALS = True ! [Boolean] default = False - ! If true, check the surface state for ridiculous values. -BAD_VAL_SSH_MAX = 50.0 ! [m] default = 20.0 - ! The value of SSH above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SSS_MAX = 75.0 ! [PPT] default = 45.0 - ! The value of SSS above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SST_MAX = 55.0 ! [deg C] default = 45.0 - ! The value of SST above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SST_MIN = -3.0 ! [deg C] default = -2.1 - ! The value of SST below which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -DEFAULT_2018_ANSWERS = True ! [Boolean] default = True - ! This sets the default value for the various _2018_ANSWERS parameters. -WRITE_GEOM = 2 ! default = 1 - ! If =0, never write the geometry and vertical grid files. If =1, write the - ! geometry and vertical grid files only for a new simulation. If =2, always - ! write the geometry and vertical grid files. Other values are invalid. -SAVE_INITIAL_CONDS = False ! [Boolean] default = False - ! If true, write the initial conditions to a file given by IC_OUTPUT_FILE. - -! === module MOM_hor_index === -! Sets the horizontal array index types. - -! === module MOM_fixed_initialization === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = True - ! If true, use an older algorithm to calculate the sine and - ! cosines needed rotate between grid-oriented directions and - ! true north and east. Differences arise at the tripolar fold -USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = True - ! If true, use older code that incorrectly sets the longitude in some points - ! along the tripolar fold to be off by 360 degrees. -TOPO_CONFIG = "file" ! - ! This specifies how bathymetry is specified: - ! file - read bathymetric information from the file - ! specified by (TOPO_FILE). - ! flat - flat bottom set to MAXIMUM_DEPTH. - ! bowl - an analytically specified bowl-shaped basin - ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. - ! spoon - a similar shape to 'bowl', but with an vertical - ! wall at the southern face. - ! halfpipe - a zonally uniform channel with a half-sine - ! profile in the meridional direction. - ! benchmark - use the benchmark test case topography. - ! Neverland - use the Neverland test case topography. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a slope and channel configuration for the - ! ISOMIP test case. - ! DOME2D - use a shelf and slope configuration for the - ! DOME2D gravity current/overflow test case. - ! Kelvin - flat but with rotated land mask. - ! seamount - Gaussian bump for spontaneous motion test case. - ! dumbbell - Sloshing channel with reservoirs on both ends. - ! shelfwave - exponential slope for shelfwave test case. - ! Phillips - ACC-like idealized topography used in the Phillips config. - ! dense - Denmark Strait-like dense water formation and overflow. - ! USER - call a user modified routine. -TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" - ! The file from which the bathymetry is read. -ALLOW_LANDMASK_CHANGES = @[MOM6_ALLOW_LANDMASK_CHANGES] ! default = "False" - ! If true, allow topography overrides to change ocean points to land -MAXIMUM_DEPTH = 6500.0 ! [m] - ! The maximum depth of the ocean. -MINIMUM_DEPTH = 9.5 ! [m] default = 0.0 - ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is - ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is - ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than - ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. - -! === module MOM_open_boundary === -! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, -! if any. -MASKING_DEPTH = 0.0 ! [m] default = -9999.0 - ! The depth below which to mask points as land points, for which all fluxes are - ! zeroed out. MASKING_DEPTH is ignored if negative. -CHANNEL_CONFIG = "list" ! default = "none" - ! A parameter that determines which set of channels are - ! restricted to specific widths. Options are: - ! none - All channels have the grid width. - ! global_1deg - Sets 16 specific channels appropriate - ! for a 1-degree model, as used in CM2G. - ! list - Read the channel locations and widths from a - ! text file, like MOM_channel_list in the MOM_SIS - ! test case. - ! file - Read open face widths everywhere from a - ! NetCDF file on the model grid. -CHANNEL_LIST_FILE = "MOM_channels_global_025" ! default = "MOM_channel_list" - ! The file from which the list of narrowed channels is read. - -! === module MOM_verticalGrid === -! Parameters providing information about the vertical grid. -NK = 75 ! [nondim] - ! The number of model layers. - -! === module MOM_tracer_registry === - -! === module MOM_EOS === -DTFREEZE_DP = -7.75E-08 ! [deg C Pa-1] default = 0.0 - ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential - ! temperature with pressure. - -! === module MOM_restart === -PARALLEL_RESTARTFILES = True ! [Boolean] default = False - ! If true, each processor writes its own restart file, otherwise a single - ! restart file is generated - -! === module MOM_tracer_flow_control === -USE_IDEAL_AGE_TRACER = False ! [Boolean] default = False - ! If true, use the ideal_age_example tracer package. - -! === module ideal_age_example === - -! === module MOM_coord_initialization === -COORD_CONFIG = "file" ! - ! This specifies how layers are to be defined: - ! ALE or none - used to avoid defining layers in ALE mode - ! file - read coordinate information from the file - ! specified by (COORD_FILE). - ! BFB - Custom coords for buoyancy-forced basin case - ! based on SST_S, T_BOT and DRHO_DT. - ! linear - linear based on interfaces not layers - ! layer_ref - linear based on layer densities - ! ts_ref - use reference temperature and salinity - ! ts_range - use range of temperature and salinity - ! (T_REF and S_REF) to determine surface density - ! and GINT calculate internal densities. - ! gprime - use reference density (RHO_0) for surface - ! density and GINT calculate internal densities. - ! ts_profile - use temperature and salinity profiles - ! (read from COORD_FILE) to set layer densities. - ! USER - call a user modified routine. -COORD_FILE = "layer_coord.nc" ! - ! The file from which the coordinate densities are read. -REMAP_UV_USING_OLD_ALG = True ! [Boolean] default = True - ! If true, uses the old remapping-via-a-delta-z method for remapping u and v. If - ! false, uses the new method that remaps between grids described by an old and - ! new thickness. -REGRIDDING_COORDINATE_MODE = "HYCOM1" ! default = "LAYER" - ! Coordinate mode for vertical regridding. Choose among the following - ! possibilities: LAYER - Isopycnal or stacked shallow water layers - ! ZSTAR, Z* - stretched geopotential z* - ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf - ! SIGMA - terrain following coordinates - ! RHO - continuous isopycnal - ! HYCOM1 - HyCOM-like hybrid coordinate - ! SLIGHT - stretched coordinates above continuous isopycnal - ! ADAPTIVE - optimize for smooth neutral density surfaces -BOUNDARY_EXTRAPOLATION = True ! [Boolean] default = False - ! When defined, a proper high-order reconstruction scheme is used within - ! boundary cells rather than PCM. E.g., if PPM is used for remapping, a PPM - ! reconstruction will also be used within boundary cells. -ALE_COORDINATE_CONFIG = "HYBRID:hycom1_75_800m.nc,sigma2,FNC1:2,4000,4.5,.01" ! default = "UNIFORM" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter ALE_RESOLUTION - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz -!ALE_RESOLUTION = 7*2.0, 2*2.01, 2.02, 2.03, 2.05, 2.08, 2.11, 2.15, 2.21, 2.2800000000000002, 2.37, 2.48, 2.61, 2.77, 2.95, 3.17, 3.4299999999999997, 3.74, 4.09, 4.49, 4.95, 5.48, 6.07, 6.74, 7.5, 8.34, 9.280000000000001, 10.33, 11.49, 12.77, 14.19, 15.74, 17.450000000000003, 19.31, 21.35, 23.56, 25.97, 28.580000000000002, 31.41, 34.47, 37.77, 41.32, 45.14, 49.25, 53.65, 58.370000000000005, 63.42, 68.81, 74.56, 80.68, 87.21000000000001, 94.14, 101.51, 109.33, 117.62, 126.4, 135.68, 145.5, 155.87, 166.81, 178.35, 190.51, 203.31, 216.78, 230.93, 245.8, 261.42, 277.83 ! [m] - ! The distribution of vertical resolution for the target - ! grid used for Eulerian-like coordinates. For example, - ! in z-coordinate mode, the parameter is a list of level - ! thicknesses (in m). In sigma-coordinate mode, the list - ! is of non-dimensional fractions of the water column. -!TARGET_DENSITIES = 1010.0, 1014.3034, 1017.8088, 1020.843, 1023.5566, 1025.813, 1027.0275, 1027.9114, 1028.6422, 1029.2795, 1029.852, 1030.3762, 1030.8626, 1031.3183, 1031.7486, 1032.1572, 1032.5471, 1032.9207, 1033.2798, 1033.6261, 1033.9608, 1034.2519, 1034.4817, 1034.6774, 1034.8508, 1035.0082, 1035.1533, 1035.2886, 1035.4159, 1035.5364, 1035.6511, 1035.7608, 1035.8661, 1035.9675, 1036.0645, 1036.1554, 1036.2411, 1036.3223, 1036.3998, 1036.4739, 1036.5451, 1036.6137, 1036.68, 1036.7441, 1036.8062, 1036.8526, 1036.8874, 1036.9164, 1036.9418, 1036.9647, 1036.9857, 1037.0052, 1037.0236, 1037.0409, 1037.0574, 1037.0738, 1037.0902, 1037.1066, 1037.123, 1037.1394, 1037.1558, 1037.1722, 1037.1887, 1037.206, 1037.2241, 1037.2435, 1037.2642, 1037.2866, 1037.3112, 1037.3389, 1037.3713, 1037.4118, 1037.475, 1037.6332, 1037.8104, 1038.0 ! [m] - ! HYBRID target densities for interfaces -REGRID_COMPRESSIBILITY_FRACTION = 0.01 ! [nondim] default = 0.0 - ! When interpolating potential density profiles we can add some artificial - ! compressibility solely to make homogeneous regions appear stratified. -MAXIMUM_INT_DEPTH_CONFIG = "FNC1:5,8000.0,1.0,.01" ! default = "NONE" - ! Determines how to specify the maximum interface depths. - ! Valid options are: - ! NONE - there are no maximum interface depths - ! PARAM - use the vector-parameter MAXIMUM_INTERFACE_DEPTHS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAXIMUM_INT_DEPTHS = 0.0, 5.0, 12.75, 23.25, 36.49, 52.480000000000004, 71.22, 92.71000000000001, 116.94000000000001, 143.92000000000002, 173.65, 206.13, 241.36, 279.33000000000004, 320.05000000000007, 363.5200000000001, 409.7400000000001, 458.7000000000001, 510.4100000000001, 564.8700000000001, 622.0800000000002, 682.0300000000002, 744.7300000000002, 810.1800000000003, 878.3800000000003, 949.3300000000004, 1023.0200000000004, 1099.4600000000005, 1178.6500000000005, 1260.5900000000006, 1345.2700000000007, 1432.7000000000007, 1522.8800000000008, 1615.8100000000009, 1711.490000000001, 1809.910000000001, 1911.080000000001, 2015.0000000000011, 2121.670000000001, 2231.080000000001, 2343.2400000000007, 2458.1500000000005, 2575.8100000000004, 2696.2200000000003, 2819.3700000000003, 2945.2700000000004, 3073.9200000000005, 3205.3200000000006, 3339.4600000000005, 3476.3500000000004, 3615.9900000000002, 3758.38, 3903.52, 4051.4, 4202.03, 4355.41, 4511.54, 4670.41, 4832.03, 4996.4, 5163.5199999999995, 5333.379999999999, 5505.989999999999, 5681.3499999999985, 5859.459999999998, 6040.319999999998, 6223.919999999998, 6410.269999999999, 6599.369999999999, 6791.219999999999, 6985.8099999999995, 7183.15, 7383.24, 7586.08, 7791.67, 8000.0 - ! The list of maximum depths for each interface. -MAX_LAYER_THICKNESS_CONFIG = "FNC1:400,31000.0,0.1,.01" ! default = "NONE" - ! Determines how to specify the maximum layer thicknesses. - ! Valid options are: - ! NONE - there are no maximum layer thicknesses - ! PARAM - use the vector-parameter MAX_LAYER_THICKNESS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAX_LAYER_THICKNESS = 400.0, 409.63, 410.32, 410.75, 411.07, 411.32, 411.52, 411.7, 411.86, 412.0, 412.13, 412.24, 412.35, 412.45, 412.54, 412.63, 412.71, 412.79, 412.86, 412.93, 413.0, 413.06, 413.12, 413.18, 413.24, 413.29, 413.34, 413.39, 413.44, 413.49, 413.54, 413.58, 413.62, 413.67, 413.71, 413.75, 413.78, 413.82, 413.86, 413.9, 413.93, 413.97, 414.0, 414.03, 414.06, 414.1, 414.13, 414.16, 414.19, 414.22, 414.24, 414.27, 414.3, 414.33, 414.35, 414.38, 414.41, 414.43, 414.46, 414.48, 414.51, 414.53, 414.55, 414.58, 414.6, 414.62, 414.65, 414.67, 414.69, 414.71, 414.73, 414.75, 414.77, 414.79, 414.83 ! [m] - ! The list of maximum thickness for each layer. -REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" - ! This sets the reconstruction scheme used for vertical remapping for all - ! variables. It can be one of the following schemes: PCM (1st-order - ! accurate) - ! PLM (2nd-order accurate) - ! PPM_H4 (3rd-order accurate) - ! PPM_IH4 (3rd-order accurate) - ! PQM_IH4IH3 (4th-order accurate) - ! PQM_IH6IH5 (5th-order accurate) - -! === module MOM_grid === -! Parameters providing information about the lateral grid. - -! === module MOM_state_initialization === -INIT_LAYERS_FROM_Z_FILE = True ! [Boolean] default = False - ! If true, initialize the layer thicknesses, temperatures, and salinities from a - ! Z-space file on a latitude-longitude grid. - -! === module MOM_initialize_layers_from_Z === -TEMP_SALT_Z_INIT_FILE = "MOM6_IC_TS.nc" ! default = "temp_salt_z.nc" - ! The name of the z-space input file used to initialize - ! temperatures (T) and salinities (S). If T and S are not - ! in the same file, TEMP_Z_INIT_FILE and SALT_Z_INIT_FILE - ! must be set. -Z_INIT_FILE_PTEMP_VAR = "temp" ! default = "ptemp" - ! The name of the potential temperature variable in - ! TEMP_Z_INIT_FILE. -Z_INIT_FILE_SALT_VAR = "salt" ! default = "salt" - ! The name of the salinity variable in - ! SALT_Z_INIT_FILE. - -Z_INIT_ALE_REMAPPING = True ! [Boolean] default = False - ! If True, then remap straight to model coordinate from file. -Z_INIT_REMAP_OLD_ALG = True ! [Boolean] default = True - ! If false, uses the preferred remapping algorithm for initialization. If true, - ! use an older, less robust algorithm for remapping. - -! === module MOM_diag_mediator === -!Jiande NUM_DIAG_COORDS = 2 ! default = 1 -NUM_DIAG_COORDS = 1 ! default = 1 - ! The number of diagnostic vertical coordinates to use. - ! For each coordinate, an entry in DIAG_COORDS must be provided. -!Jiande DIAG_COORDS = "z Z ZSTAR", "rho2 RHO2 RHO" ! -DIAG_COORDS = "z Z ZSTAR" - ! A list of string tuples associating diag_table modules to - ! a coordinate definition used for diagnostics. Each string - ! is of the form "MODULE_SUFFIX,PARAMETER_SUFFIX,COORDINATE_NAME". -DIAG_COORD_DEF_Z="FILE:interpolate_zgrid_40L.nc,interfaces=zw" -DIAG_MISVAL = -1e34 -!DIAG_COORD_DEF_RHO2 = "RFNC1:35,999.5,1028,1028.5,8.,1038.,0.0078125" ! default = "WOA09" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter DIAG_COORD_RES_RHO2 - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz - -! === module MOM_MEKE === -USE_MEKE = True ! [Boolean] default = False - ! If true, turns on the MEKE scheme which calculates a sub-grid mesoscale eddy - ! kinetic energy budget. -MEKE_GMCOEFF = 1.0 ! [nondim] default = -1.0 - ! The efficiency of the conversion of potential energy into MEKE by the - ! thickness mixing parameterization. If MEKE_GMCOEFF is negative, this - ! conversion is not used or calculated. -MEKE_BGSRC = 1.0E-13 ! [W kg-1] default = 0.0 - ! A background energy source for MEKE. -MEKE_KHTH_FAC = 0.5 ! [nondim] default = 0.0 - ! A factor that maps MEKE%Kh to KhTh. -MEKE_KHTR_FAC = 0.5 ! [nondim] default = 0.0 - ! A factor that maps MEKE%Kh to KhTr. -MEKE_KHMEKE_FAC = 1.0 ! [nondim] default = 0.0 - ! A factor that maps MEKE%Kh to Kh for MEKE itself. -MEKE_VISCOSITY_COEFF_KU = 1.0 ! [nondim] default = 0.0 - ! If non-zero, is the scaling coefficient in the expression forviscosity used to - ! parameterize harmonic lateral momentum mixing byunresolved eddies represented - ! by MEKE. Can be negative torepresent backscatter from the unresolved eddies. -MEKE_ALPHA_RHINES = 0.15 ! [nondim] default = 0.05 - ! If positive, is a coefficient weighting the Rhines scale in the expression for - ! mixing length used in MEKE-derived diffusivity. -MEKE_ALPHA_EADY = 0.15 ! [nondim] default = 0.05 - ! If positive, is a coefficient weighting the Eady length scale in the - ! expression for mixing length used in MEKE-derived diffusivity. - -! === module MOM_lateral_mixing_coeffs === -USE_VARIABLE_MIXING = True ! [Boolean] default = False - ! If true, the variable mixing code will be called. This allows diagnostics to - ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or - ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter - ! file. -RESOLN_SCALED_KH = True ! [Boolean] default = False - ! If true, the Laplacian lateral viscosity is scaled away when the first - ! baroclinic deformation radius is well resolved. -RESOLN_SCALED_KHTH = True ! [Boolean] default = False - ! If true, the interface depth diffusivity is scaled away when the first - ! baroclinic deformation radius is well resolved. -KHTH_USE_EBT_STRUCT = True ! [Boolean] default = False - ! If true, uses the equivalent barotropic structure as the vertical structure of - ! thickness diffusivity. -KHTR_SLOPE_CFF = 0.25 ! [nondim] default = 0.0 - ! The nondimensional coefficient in the Visbeck formula for the epipycnal tracer - ! diffusivity -USE_STORED_SLOPES = True ! [Boolean] default = False - ! If true, the isopycnal slopes are calculated once and stored for re-use. This - ! uses more memory but avoids calling the equation of state more times than - ! should be necessary. -KH_RES_FN_POWER = 100 ! [nondim] default = 2 - ! The power of dx/Ld in the Kh resolution function. Any positive integer may be - ! used, although even integers are more efficient to calculate. Setting this - ! greater than 100 results in a step-function being used. -INTERPOLATE_RES_FN = False ! [Boolean] default = True - ! If true, interpolate the resolution function to the velocity points from the - ! thickness points; otherwise interpolate the wave speed and calculate the - ! resolution function independently at each point. -GILL_EQUATORIAL_LD = True ! [Boolean] default = False - ! If true, uses Gill's definition of the baroclinic equatorial deformation - ! radius, otherwise, if false, use Pedlosky's definition. These definitions - ! differ by a factor of 2 in front of the beta term in the denominator. Gill's - ! is the more appropriate definition. -INTERNAL_WAVE_SPEED_BETTER_EST = False ! [Boolean] default = True - ! If true, use a more robust estimate of the first mode wave speed as the - ! starting point for iterations. - -! === module MOM_set_visc === -CHANNEL_DRAG = True ! [Boolean] default = False - ! If true, the bottom drag is exerted directly on each layer proportional to the - ! fraction of the bottom it overlies. -PRANDTL_TURB = 1.25 ! [nondim] default = 1.0 - ! The turbulent Prandtl number applied to shear instability. -HBBL = 10.0 ! [m] - ! The thickness of a bottom boundary layer with a viscosity of KVBBL if - ! BOTTOMDRAGLAW is not defined, or the thickness over which near-bottom - ! velocities are averaged for the drag law if BOTTOMDRAGLAW is defined but - ! LINEAR_DRAG is not. -DRAG_BG_VEL = 0.1 ! [m s-1] default = 0.0 - ! DRAG_BG_VEL is either the assumed bottom velocity (with LINEAR_DRAG) or an - ! unresolved velocity that is combined with the resolved velocity to estimate - ! the velocity magnitude. DRAG_BG_VEL is only used when BOTTOMDRAGLAW is - ! defined. -BBL_USE_EOS = True ! [Boolean] default = False - ! If true, use the equation of state in determining the properties of the bottom - ! boundary layer. Otherwise use the layer target potential densities. -BBL_THICK_MIN = 0.1 ! [m] default = 0.0 - ! The minimum bottom boundary layer thickness that can be used with - ! BOTTOMDRAGLAW. This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum - ! near-bottom viscosity. -KV = 1.0E-04 ! [m2 s-1] - ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 - ! m2 s-1, may be used. -KV_BBL_MIN = 0.0 ! [m2 s-1] default = 1.0E-04 - ! The minimum viscosities in the bottom boundary layer. -KV_TBL_MIN = 0.0 ! [m2 s-1] default = 1.0E-04 - ! The minimum viscosities in the top boundary layer. - -! === module MOM_thickness_diffuse === -KHTH_MAX_CFL = 0.1 ! [nondimensional] default = 0.8 - ! The maximum value of the local diffusive CFL ratio that is permitted for the - ! thickness diffusivity. 1.0 is the marginally unstable value in a pure layered - ! model, but much smaller numbers (e.g. 0.1) seem to work better for ALE-based - ! models. -KHTH_USE_FGNV_STREAMFUNCTION = True ! [Boolean] default = False - ! If true, use the streamfunction formulation of Ferrari et al., 2010, which - ! effectively emphasizes graver vertical modes by smoothing in the vertical. -FGNV_FILTER_SCALE = 0.1 ! [nondim] default = 1.0 - ! A coefficient scaling the vertical smoothing term in the Ferrari et al., 2010, - ! streamfunction formulation. -USE_GM_WORK_BUG = True ! [Boolean] default = True - ! If true, compute the top-layer work tendency on the u-grid with the incorrect - ! sign, for legacy reproducibility. - -! === module MOM_continuity === - -! === module MOM_continuity_PPM === -ETA_TOLERANCE = 1.0E-06 ! [m] default = 3.75E-09 - ! The tolerance for the differences between the barotropic and baroclinic - ! estimates of the sea surface height due to the fluxes through each face. The - ! total tolerance for SSH is 4 times this value. The default is - ! 0.5*NK*ANGSTROM, and this should not be set less than about - ! 10^-15*MAXIMUM_DEPTH. -ETA_TOLERANCE_AUX = 0.001 ! [m] default = 1.0E-06 - ! The tolerance for free-surface height discrepancies between the barotropic - ! solution and the sum of the layer thicknesses when calculating the auxiliary - ! corrected velocities. By default, this is the same as ETA_TOLERANCE, but can - ! be made larger for efficiency. - -! === module MOM_CoriolisAdv === -CORIOLIS_SCHEME = "SADOURNY75_ENSTRO" ! default = "SADOURNY75_ENERGY" - ! CORIOLIS_SCHEME selects the discretization for the Coriolis terms. Valid - ! values are: - ! SADOURNY75_ENERGY - Sadourny, 1975; energy cons. - ! ARAKAWA_HSU90 - Arakawa & Hsu, 1990 - ! SADOURNY75_ENSTRO - Sadourny, 1975; enstrophy cons. - ! ARAKAWA_LAMB81 - Arakawa & Lamb, 1981; En. + Enst. - ! ARAKAWA_LAMB_BLEND - A blend of Arakawa & Lamb with - ! Arakawa & Hsu and Sadourny energy -BOUND_CORIOLIS = True ! [Boolean] default = False - ! If true, the Coriolis terms at u-points are bounded by the four estimates of - ! (f+rv)v from the four neighboring v-points, and similarly at v-points. This - ! option would have no effect on the SADOURNY Coriolis scheme if it were - ! possible to use centered difference thickness fluxes. - -! === module MOM_PressureForce === - -! === module MOM_PressureForce_AFV === -MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False - ! If true, use mass weighting when interpolating T/S for integrals near the - ! bathymetry in AFV pressure gradient calculations. - -! === module MOM_hor_visc === -LAPLACIAN = True ! [Boolean] default = False - ! If true, use a Laplacian horizontal viscosity. -KH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the grid spacing to calculate the - ! Laplacian viscosity. The final viscosity is the largest of this scaled - ! viscosity, the Smagorinsky and Leith viscosities, and KH. -KH_SIN_LAT = 2000.0 ! [m2 s-1] default = 0.0 - ! The amplitude of a latitudinally-dependent background viscosity of the form - ! KH_SIN_LAT*(SIN(LAT)**KH_PWR_OF_SINE). -SMAGORINSKY_KH = True ! [Boolean] default = False - ! If true, use a Smagorinsky nonlinear eddy viscosity. -SMAG_LAP_CONST = 0.15 ! [nondim] default = 0.0 - ! The nondimensional Laplacian Smagorinsky constant, often 0.15. -AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the cube of the grid spacing to - ! calculate the biharmonic viscosity. The final viscosity is the largest of this - ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. -SMAGORINSKY_AH = True ! [Boolean] default = False - ! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity. -SMAG_BI_CONST = 0.06 ! [nondim] default = 0.0 - ! The nondimensional biharmonic Smagorinsky constant, typically 0.015 - 0.06. -USE_LAND_MASK_FOR_HVISC = False ! [Boolean] default = False - ! If true, use Use the land mask for the computation of thicknesses at velocity - ! locations. This eliminates the dependence on arbitrary values over land or - ! outside of the domain. Default is False in order to maintain answers with - ! legacy experiments but should be changed to True for new experiments. - -! === module MOM_vert_friction === -HMIX_FIXED = 0.5 ! [m] - ! The prescribed depth over which the near-surface viscosity and diffusivity are - ! elevated when the bulk mixed layer is not used. -KVML = 1.0E-04 ! [m2 s-1] default = 1.0E-04 - ! The kinematic viscosity in the mixed layer. A typical value is ~1e-2 m2 s-1. - ! KVML is not used if BULKMIXEDLAYER is true. The default is set by KV. -MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 - ! The maximum velocity allowed before the velocity components are truncated. - -! === module MOM_PointAccel === -U_TRUNC_FILE = "U_velocity_truncations" ! default = "" - ! The absolute path to a file into which the accelerations leading to zonal - ! velocity truncations are written. Undefine this for efficiency if this - ! diagnostic is not needed. -V_TRUNC_FILE = "V_velocity_truncations" ! default = "" - ! The absolute path to a file into which the accelerations leading to meridional - ! velocity truncations are written. Undefine this for efficiency if this - ! diagnostic is not needed. - -! === module MOM_barotropic === -BOUND_BT_CORRECTION = True ! [Boolean] default = False - ! If true, the corrective pseudo mass-fluxes into the barotropic solver are - ! limited to values that require less than maxCFL_BT_cont to be accommodated. -BT_PROJECT_VELOCITY = True ! [Boolean] default = False - ! If true, step the barotropic velocity first and project out the velocity - ! tendency by 1+BEBT when calculating the transport. The default (false) is to - ! use a predictor continuity step to find the pressure field, and then to do a - ! corrector continuity step using a weighted average of the old and new - ! velocities, with weights of (1-BEBT) and BEBT. -DYNAMIC_SURFACE_PRESSURE = True ! [Boolean] default = False - ! If true, add a dynamic pressure due to a viscous ice shelf, for instance. -BEBT = 0.2 ! [nondim] default = 0.1 - ! BEBT determines whether the barotropic time stepping uses the forward-backward - ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range - ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 - ! (for a backward Euler treatment). In practice, BEBT must be greater than about - ! 0.05. -DTBT = -0.9 ! [s or nondim] default = -0.98 - ! The barotropic time step, in s. DTBT is only used with the split explicit time - ! stepping. To set the time step automatically based the maximum stable value - ! use 0, or a negative value gives the fraction of the stable value. Setting - ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will - ! actually be used is an integer fraction of DT, rounding down. -BT_USE_OLD_CORIOLIS_BRACKET_BUG = True ! [Boolean] default = False - ! If True, use an order of operations that is not bitwise rotationally symmetric - ! in the meridional Coriolis term of the barotropic solver. - -! === module MOM_mixed_layer_restrat === -MIXEDLAYER_RESTRAT = True ! [Boolean] default = False - ! If true, a density-gradient dependent re-stratifying flow is imposed in the - ! mixed layer. Can be used in ALE mode without restriction but in layer mode can - ! only be used if BULKMIXEDLAYER is true. -FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0 - ! A nondimensional coefficient that is proportional to the ratio of the - ! deformation radius to the dominant lengthscale of the submesoscale mixed layer - ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic - ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of - ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. - ! (2010) -MLE_FRONT_LENGTH = 200.0 ! [m] default = 0.0 - ! If non-zero, is the frontal-length scale used to calculate the upscaling of - ! buoyancy gradients that is otherwise represented by the parameter - ! FOX_KEMPER_ML_RESTRAT_COEF. If MLE_FRONT_LENGTH is non-zero, it is recommended - ! to set FOX_KEMPER_ML_RESTRAT_COEF=1.0. -MLE_USE_PBL_MLD = True ! [Boolean] default = False - ! If true, the MLE parameterization will use the mixed-layer depth provided by - ! the active PBL parameterization. If false, MLE will estimate a MLD based on a - ! density difference with the surface using the parameter MLE_DENSITY_DIFF. -MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 - ! The time-scale for a running-mean filter applied to the mixed-layer depth used - ! in the MLE restratification parameterization. When the MLD deepens below the - ! current running-mean the running-mean is instantaneously set to the current - ! MLD. - -! === module MOM_diabatic_driver === -! The following parameters are used for diabatic processes. -ENERGETICS_SFC_PBL = True ! [Boolean] default = False - ! If true, use an implied energetics planetary boundary layer scheme to - ! determine the diffusivity and viscosity in the surface boundary layer. -EPBL_IS_ADDITIVE = False ! [Boolean] default = True - ! If true, the diffusivity from ePBL is added to all other diffusivities. - ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. - -! === module MOM_CVMix_KPP === -! This is the MOM wrapper to CVMix:KPP -! See http://cvmix.github.io/ - -! === module MOM_tidal_mixing === -! Vertical Tidal Mixing Parameterization -INT_TIDE_DISSIPATION = True ! [Boolean] default = False - ! If true, use an internal tidal dissipation scheme to drive diapycnal mixing, - ! along the lines of St. Laurent et al. (2002) and Simmons et al. (2004). -INT_TIDE_PROFILE = "POLZIN_09" ! default = "STLAURENT_02" - ! INT_TIDE_PROFILE selects the vertical profile of energy dissipation with - ! INT_TIDE_DISSIPATION. Valid values are: - ! STLAURENT_02 - Use the St. Laurent et al exponential - ! decay profile. - ! POLZIN_09 - Use the Polzin WKB-stretched algebraic - ! decay profile. -INT_TIDE_DECAY_SCALE = 300.3003003003003 ! [m] default = 500.0 - ! The decay scale away from the bottom for tidal TKE with the new coding when - ! INT_TIDE_DISSIPATION is used. -KAPPA_ITIDES = 6.28319E-04 ! [m-1] default = 6.283185307179586E-04 - ! A topographic wavenumber used with INT_TIDE_DISSIPATION. The default is 2pi/10 - ! km, as in St.Laurent et al. 2002. -KAPPA_H2_FACTOR = 0.84 ! [nondim] default = 1.0 - ! A scaling factor for the roughness amplitude with INT_TIDE_DISSIPATION. -TKE_ITIDE_MAX = 0.1 ! [W m-2] default = 1000.0 - ! The maximum internal tide energy source available to mix above the bottom - ! boundary layer with INT_TIDE_DISSIPATION. -READ_TIDEAMP = True ! [Boolean] default = False - ! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude - ! with INT_TIDE_DISSIPATION. -TIDEAMP_FILE = "tidal_amplitude.nc" ! default = "tideamp.nc" - ! The path to the file containing the spatially varying tidal amplitudes with - ! INT_TIDE_DISSIPATION. -H2_FILE = "ocean_topog.nc" ! - ! The path to the file containing the sub-grid-scale topographic roughness - ! amplitude with INT_TIDE_DISSIPATION. - -! === module MOM_CVMix_conv === -! Parameterization of enhanced mixing due to convection via CVMix - -! === module MOM_geothermal === -GEOTHERMAL_SCALE = 1.0 ! [W m-2 or various] default = 0.0 - ! The constant geothermal heat flux, a rescaling factor for the heat flux read - ! from GEOTHERMAL_FILE, or 0 to disable the geothermal heating. -GEOTHERMAL_FILE = "geothermal_davies2013_v1.nc" ! default = "" - ! The file from which the geothermal heating is to be read, or blank to use a - ! constant heating rate. -GEOTHERMAL_VARNAME = "geothermal_hf" ! default = "geo_heat" - ! The name of the geothermal heating variable in GEOTHERMAL_FILE. - -! === module MOM_set_diffusivity === -BBL_MIXING_AS_MAX = False ! [Boolean] default = True - ! If true, take the maximum of the diffusivity from the BBL mixing and the other - ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added. -USE_LOTW_BBL_DIFFUSIVITY = True ! [Boolean] default = False - ! If true, uses a simple, imprecise but non-coordinate dependent, model of BBL - ! mixing diffusivity based on Law of the Wall. Otherwise, uses the original BBL - ! scheme. -SIMPLE_TKE_TO_KD = True ! [Boolean] default = False - ! If true, uses a simple estimate of Kd/TKE that will work for arbitrary - ! vertical coordinates. If false, calculates Kd/TKE and bounds based on exact - ! energetics for an isopycnal layer-formulation. - -! === module MOM_bkgnd_mixing === -! Adding static vertical background mixing coefficients -KD = 1.5E-05 ! [m2 s-1] - ! The background diapycnal diffusivity of density in the interior. Zero or the - ! molecular value, ~1e-7 m2 s-1, may be used. -KD_MIN = 2.0E-06 ! [m2 s-1] default = 1.5E-07 - ! The minimum diapycnal diffusivity. -HENYEY_IGW_BACKGROUND = True ! [Boolean] default = False - ! If true, use a latitude-dependent scaling for the near surface background - ! diffusivity, as described in Harrison & Hallberg, JPO 2008. -KD_MAX = 0.1 ! [m2 s-1] default = -1.0 - ! The maximum permitted increment for the diapycnal diffusivity from TKE-based - ! parameterizations, or a negative value for no limit. - -! === module MOM_kappa_shear === -! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 -USE_JACKSON_PARAM = True ! [Boolean] default = False - ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing - ! parameterization. -MAX_RINO_IT = 25 ! [nondim] default = 50 - ! The maximum number of iterations that may be used to estimate the Richardson - ! number driven mixing. -VERTEX_SHEAR = False ! [Boolean] default = False - ! If true, do the calculations of the shear-driven mixing - ! at the cell vertices (i.e., the vorticity points). -KAPPA_SHEAR_ITER_BUG = True ! [Boolean] default = True - ! If true, use an older, dimensionally inconsistent estimate of the derivative - ! of diffusivity with energy in the Newton's method iteration. The bug causes - ! undercorrections when dz > 1 m. -KAPPA_SHEAR_ALL_LAYER_TKE_BUG = True ! [Boolean] default = True - ! If true, report back the latest estimate of TKE instead of the time average - ! TKE when there is mass in all layers. Otherwise always report the time - ! averaged TKE, as is currently done when there are some massless layers. - -! === module MOM_CVMix_shear === -! Parameterization of shear-driven turbulence via CVMix (various options) - -! === module MOM_CVMix_ddiff === -! Parameterization of mixing due to double diffusion processes via CVMix - -! === module MOM_diabatic_aux === -! The following parameters are used for auxiliary diabatic processes. -PRESSURE_DEPENDENT_FRAZIL = False ! [Boolean] default = False - ! If true, use a pressure dependent freezing temperature when making frazil. The - ! default is false, which will be faster but is inappropriate with ice-shelf - ! cavities. -VAR_PEN_SW = True ! [Boolean] default = False - ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine - ! the e-folding depth of incoming short wave radiation. -CHL_FILE = @[CHLCLIM] ! - ! CHL_FILE is the file containing chl_a concentrations in the variable CHL_A. It - ! is used when VAR_PEN_SW and CHL_FROM_FILE are true. -CHL_VARNAME = "chlor_a" ! default = "CHL_A" - ! Name of CHL_A variable in CHL_FILE. - -! === module MOM_energetic_PBL === -ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0 - ! When setting the decay scale for turbulence, use this fraction of the absolute - ! rotation rate blended with the local value of f, as sqrt((1-of)*f^2 + - ! of*4*omega^2). -TKE_DECAY = 0.01 ! [nondim] default = 2.5 - ! TKE_DECAY relates the vertical rate of decay of the TKE available for - ! mechanical entrainment to the natural Ekman depth. -EPBL_MSTAR_SCHEME = "OM4" ! default = "CONSTANT" - ! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are: - ! CONSTANT - Use a fixed mstar given by MSTAR - ! OM4 - Use L_Ekman/L_Obukhov in the sabilizing limit, as in OM4 - ! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018. -MSTAR_CAP = 10.0 ! [nondim] default = -1.0 - ! If this value is positive, it sets the maximum value of mstar allowed in ePBL. - ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT). -MSTAR2_COEF1 = 0.29 ! [nondim] default = 0.3 - ! Coefficient in computing mstar when rotation and stabilizing effects are both - ! important (used if EPBL_MSTAR_SCHEME = OM4). -MSTAR2_COEF2 = 0.152 ! [nondim] default = 0.085 - ! Coefficient in computing mstar when only rotation limits the total mixing - ! (used if EPBL_MSTAR_SCHEME = OM4) -EPBL_MLD_BISECTION = True ! [Boolean] default = False - ! If true, use bisection with the iterative determination of the self-consistent - ! mixed layer depth. Otherwise use the false position after a maximum and - ! minimum bound have been evaluated and the returned value or bisection before - ! this. -NSTAR = 0.06 ! [nondim] default = 0.2 - ! The portion of the buoyant potential energy imparted by surface fluxes that is - ! available to drive entrainment at the base of mixed layer when that energy is - ! positive. -MSTAR_CONV_ADJ = 0.667 ! [nondim] default = 0.0 - ! Coefficient used for reducing mstar during convection due to reduction of - ! stable density gradient. -USE_MLD_ITERATION = True ! [Boolean] default = False - ! A logical that specifies whether or not to use the distance to the bottom of - ! the actively turbulent boundary layer to help set the EPBL length scale. -EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1 - ! A scale for the mixing length in the transition layer at the edge of the - ! boundary layer as a fraction of the boundary layer thickness. -MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0 - ! The exponent applied to the ratio of the distance to the MLD and the MLD depth - ! which determines the shape of the mixing length. This is only used if - ! USE_MLD_ITERATION is True. -USE_LA_LI2016 = @[MOM6_USE_LI2016] ! [nondim] default = False - ! A logical to use the Li et al. 2016 (submitted) formula to determine the - ! Langmuir number. -USE_WAVES = @[MOM6_USE_WAVES] ! [Boolean] default = False - ! If true, enables surface wave modules. -WAVE_METHOD = "SURFACE_BANDS" ! default = "EMPTY" - ! Choice of wave method, valid options include: - ! TEST_PROFILE - Prescribed from surface Stokes drift - ! and a decay wavelength. - ! SURFACE_BANDS - Computed from multiple surface values - ! and decay wavelengths. - ! DHH85 - Uses Donelan et al. 1985 empirical - ! wave spectrum with prescribed values. - ! LF17 - Infers Stokes drift profile from wind - ! speed following Li and Fox-Kemper 2017. -SURFBAND_SOURCE = "COUPLER" ! default = "EMPTY" - ! Choice of SURFACE_BANDS data mode, valid options include: - ! DATAOVERRIDE - Read from NetCDF using FMS DataOverride. - ! COUPLER - Look for variables from coupler pass - ! INPUT - Testing with fixed values. -STK_BAND_COUPLER = 3 ! default = 1 - ! STK_BAND_COUPLER is the number of Stokes drift bands in the coupler. This has - ! to be consistent with the number of Stokes drift bands in WW3, or the model - ! will fail. -SURFBAND_WAVENUMBERS = 0.04, 0.11, 0.3305 ! [rad/m] default = 0.12566 - ! Central wavenumbers for surface Stokes drift bands. -EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" - ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. - ! Valid values are: - ! NONE - Do not do any extra mixing due to Langmuir turbulence - ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir - ! turbulence - ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other - ! contributions -LT_ENHANCE_COEF = 0.044 ! [nondim] default = 0.447 - ! Coefficient for Langmuir enhancement of mstar -LT_ENHANCE_EXP = -1.5 ! [nondim] default = -1.33 - ! Exponent for Langmuir enhancementt of mstar -LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 - ! Coefficient for modification of Langmuir number due to MLD approaching Ekman - ! depth. -LT_MOD_LAC4 = 0.0 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! stable Obukhov depth. -LT_MOD_LAC5 = 0.22 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! unstable Obukhov depth. - -! === module MOM_regularize_layers === - -! === module MOM_opacity === -PEN_SW_NBANDS = 3 ! default = 1 - ! The number of bands of penetrating shortwave radiation. - -! === module MOM_tracer_advect === -TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" - ! The horizontal transport scheme for tracers: - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) - ! PPM - Piecewise Parabolic Method (Colella-Woodward) - -! === module MOM_tracer_hor_diff === -KHTR = 50.0 ! [m2 s-1] default = 0.0 - ! The background along-isopycnal tracer diffusivity. -CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False - ! If true, use enough iterations the diffusion to ensure that the diffusive - ! equivalent of the CFL limit is not violated. If false, always use the greater - ! of 1 or MAX_TR_DIFFUSION_CFL iteration. -MAX_TR_DIFFUSION_CFL = 2.0 ! [nondim] default = -1.0 - ! If positive, locally limit the along-isopycnal tracer diffusivity to keep the - ! diffusive CFL locally at or below this value. The number of diffusive - ! iterations is often this value or the next greater integer. - -! === module MOM_neutral_diffusion === -! This module implements neutral diffusion of tracers -USE_NEUTRAL_DIFFUSION = True ! [Boolean] default = False - ! If true, enables the neutral diffusion module. - -! === module ocean_model_init === -RESTART_CHECKSUMS_REQUIRED = False - -! === module MOM_oda_incupd === -ODA_INCUPD = @[ODA_INCUPD] ! [Boolean] default = False - ! If true, oda incremental updates will be applied - ! everywhere in the domain. -ODA_INCUPD_FILE = "mom6_increment.nc" ! The name of the file with the T,S,h increments. - -ODA_TEMPINC_VAR = "Temp" ! default = "ptemp_inc" - ! The name of the potential temperature inc. variable in - ! ODA_INCUPD_FILE. -ODA_SALTINC_VAR = "Salt" ! default = "sal_inc" - ! The name of the salinity inc. variable in - ! ODA_INCUPD_FILE. -ODA_THK_VAR = "h" ! default = "h" - ! The name of the int. depth inc. variable in - ! ODA_INCUPD_FILE. -ODA_INCUPD_UV = false ! -!ODA_UINC_VAR = "u" ! default = "u_inc" - ! The name of the zonal vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -!ODA_VINC_VAR = "v" ! default = "v_inc" - ! The name of the meridional vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -ODA_INCUPD_NHOURS = @[ODA_INCUPD_NHOURS] ! default=3.0 - -! === module MOM_lateral_boundary_diffusion === -! This module implements lateral diffusion of tracers near boundaries - -! === module MOM_sum_output === -MAXTRUNC = 100000 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 - ! to stop if there is any truncation of velocities. -ENERGYSAVEDAYS = 1.0 ! [days] default = 1.0 - ! The interval in units of TIMEUNIT between saves of the energies of the run and - ! other globally summed diagnostics. -ENERGYSAVEDAYS_GEOMETRIC = 0.25 ! [days] default = 0.0 - ! The starting interval in units of TIMEUNIT for the first call to save the - ! energies of the run and other globally summed diagnostics. The interval - ! increases by a factor of 2. after each call to write_energy. - -! === module ocean_model_init === - -! === module MOM_surface_forcing === -OCEAN_SURFACE_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the surface velocity field that is - ! returned to the coupler. Valid values include - ! 'A', 'B', or 'C'. - -MAX_P_SURF = 0.0 ! [Pa] default = -1.0 - ! The maximum surface pressure that can be exerted by the atmosphere and - ! floating sea-ice or ice shelves. This is needed because the FMS coupling - ! structure does not limit the water that can be frozen out of the ocean and the - ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a - ! negative value is used. -WIND_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the input wind stress field. Valid - ! values are 'A', 'B', or 'C'. -CD_TIDES = 0.0018 ! [nondim] default = 1.0E-04 - ! The drag coefficient that applies to the tides. -GUST_CONST = 0.0 ! [Pa] default = 0.02 - ! The background gustiness in the winds. -FIX_USTAR_GUSTLESS_BUG = False ! [Boolean] default = False - ! If true correct a bug in the time-averaging of the gustless wind friction - ! velocity -USE_RIGID_SEA_ICE = True ! [Boolean] default = False - ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that - ! resist vertical motion. -SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 - ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit - ! rigidity -LIQUID_RUNOFF_FROM_DATA = @[MOM6_RIVER_RUNOFF] ! [Boolean] default = False - ! If true, allows liquid river runoff to be specified via - ! the data_table using the component name 'OCN'. -! === module ocean_stochastics === -DO_SPPT = @[DO_OCN_SPPT] ! [Boolean] default = False - ! If true perturb the diabatic tendencies in MOM_diabatic_driver -PERT_EPBL = @[PERT_EPBL] ! [Boolean] default = False - ! If true perturb the KE dissipation and destruction in MOM_energetic_PBL -! === module MOM_restart === - -! === module MOM_file_parser === diff --git a/parm/ufs/mom6/MOM_input_template_100 b/parm/ufs/mom6/MOM_input_template_100 deleted file mode 100644 index f26d6e4bfb..0000000000 --- a/parm/ufs/mom6/MOM_input_template_100 +++ /dev/null @@ -1,866 +0,0 @@ -! This file was written by the model and records all non-layout or debugging parameters used at run-time. -! === module MOM === - -! === module MOM_unit_scaling === -! Parameters for doing unit scaling of variables. -USE_REGRIDDING = True ! [Boolean] default = False - ! If True, use the ALE algorithm (regridding/remapping). If False, use the - ! layered isopycnal algorithm. -THICKNESSDIFFUSE = True ! [Boolean] default = False - ! If true, interface heights are diffused with a coefficient of KHTH. -THICKNESSDIFFUSE_FIRST = True ! [Boolean] default = False - ! If true, do thickness diffusion before dynamics. This is only used if - ! THICKNESSDIFFUSE is true. -DT = @[DT_DYNAM_MOM6] ! [s] - ! The (baroclinic) dynamics time step. The time-step that is actually used will - ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode - ! or the coupling timestep in coupled mode.) -DT_THERM = @[DT_THERM_MOM6] ! [s] default = 1800.0 - ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be - ! an integer multiple of DT and less than the forcing or coupling time-step, - ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer - ! multiple of the coupling timestep. By default DT_THERM is set to DT. -THERMO_SPANS_COUPLING = @[MOM6_THERMO_SPAN] ! [Boolean] default = False - ! If true, the MOM will take thermodynamic and tracer timesteps that can be - ! longer than the coupling timestep. The actual thermodynamic timestep that is - ! used in this case is the largest integer multiple of the coupling timestep - ! that is less than or equal to DT_THERM. -HFREEZE = 20.0 ! [m] default = -1.0 - ! If HFREEZE > 0, melt potential will be computed. The actual depth - ! over which melt potential is computed will be min(HFREEZE, OBLD) - ! where OBLD is the boundary layer depth. If HFREEZE <= 0 (default) - ! melt potential will not be computed. -DTBT_RESET_PERIOD = -1.0 ! [s] default = 7200.0 - ! The period between recalculations of DTBT (if DTBT <= 0). If DTBT_RESET_PERIOD - ! is negative, DTBT is set based only on information available at - ! initialization. If 0, DTBT will be set every dynamics time step. The default - ! is set by DT_THERM. This is only used if SPLIT is true. -FRAZIL = True ! [Boolean] default = False - ! If true, water freezes if it gets too cold, and the accumulated heat deficit - ! is returned in the surface state. FRAZIL is only used if - ! ENABLE_THERMODYNAMICS is true. -BOUND_SALINITY = True ! [Boolean] default = False - ! If true, limit salinity to being positive. (The sea-ice model may ask for more - ! salt than is available and drive the salinity negative otherwise.) -MIN_SALINITY = 0.01 ! [PPT] default = 0.0 - ! The minimum value of salinity when BOUND_SALINITY=True. -C_P = 3925.0 ! [J kg-1 K-1] default = 3991.86795711963 - ! The heat capacity of sea water, approximated as a constant. This is only used - ! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10 - ! definition of conservative temperature. -USE_PSURF_IN_EOS = False ! [Boolean] default = True - ! If true, always include the surface pressure contributions in equation of - ! state calculations. -CHECK_BAD_SURFACE_VALS = True ! [Boolean] default = False - ! If true, check the surface state for ridiculous values. -BAD_VAL_SSH_MAX = 50.0 ! [m] default = 20.0 - ! The value of SSH above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SSS_MAX = 75.0 ! [PPT] default = 45.0 - ! The value of SSS above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SST_MAX = 55.0 ! [deg C] default = 45.0 - ! The value of SST above which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -BAD_VAL_SST_MIN = -3.0 ! [deg C] default = -2.1 - ! The value of SST below which a bad value message is triggered, if - ! CHECK_BAD_SURFACE_VALS is true. -DEFAULT_2018_ANSWERS = True ! [Boolean] default = False - ! This sets the default value for the various _2018_ANSWERS parameters. -WRITE_GEOM = 2 ! default = 1 - ! If =0, never write the geometry and vertical grid files. If =1, write the - ! geometry and vertical grid files only for a new simulation. If =2, always - ! write the geometry and vertical grid files. Other values are invalid. -SAVE_INITIAL_CONDS = False ! [Boolean] default = False - ! If true, write the initial conditions to a file given by IC_OUTPUT_FILE. - -! === module MOM_domains === -TRIPOLAR_N = True ! [Boolean] default = False - ! Use tripolar connectivity at the northern edge of the domain. With - ! TRIPOLAR_N, NIGLOBAL must be even. -NIGLOBAL = @[NX_GLB] ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NJGLOBAL = @[NY_GLB] ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. - -! === module MOM_hor_index === -! Sets the horizontal array index types. - -! === module MOM_fixed_initialization === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = True - ! If true, use an older algorithm to calculate the sine and - ! cosines needed rotate between grid-oriented directions and - ! true north and east. Differences arise at the tripolar fold -USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = True - ! If true, use older code that incorrectly sets the longitude in some points - ! along the tripolar fold to be off by 360 degrees. -TOPO_CONFIG = "file" ! - ! This specifies how bathymetry is specified: - ! file - read bathymetric information from the file - ! specified by (TOPO_FILE). - ! flat - flat bottom set to MAXIMUM_DEPTH. - ! bowl - an analytically specified bowl-shaped basin - ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. - ! spoon - a similar shape to 'bowl', but with an vertical - ! wall at the southern face. - ! halfpipe - a zonally uniform channel with a half-sine - ! profile in the meridional direction. - ! bbuilder - build topography from list of functions. - ! benchmark - use the benchmark test case topography. - ! Neverworld - use the Neverworld test case topography. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a slope and channel configuration for the - ! ISOMIP test case. - ! DOME2D - use a shelf and slope configuration for the - ! DOME2D gravity current/overflow test case. - ! Kelvin - flat but with rotated land mask. - ! seamount - Gaussian bump for spontaneous motion test case. - ! dumbbell - Sloshing channel with reservoirs on both ends. - ! shelfwave - exponential slope for shelfwave test case. - ! Phillips - ACC-like idealized topography used in the Phillips config. - ! dense - Denmark Strait-like dense water formation and overflow. - ! USER - call a user modified routine. -TOPO_EDITS_FILE = "@[TOPOEDITS]" ! default = "" - ! The file from which to read a list of i,j,z topography overrides. -ALLOW_LANDMASK_CHANGES = @[MOM6_ALLOW_LANDMASK_CHANGES] ! default = "False" - ! If true, allow topography overrides to change ocean points to land -MAXIMUM_DEPTH = 6500.0 ! [m] - ! The maximum depth of the ocean. -MINIMUM_DEPTH = 9.5 ! [m] default = 0.0 - ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is - ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is - ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than - ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. - -! === module MOM_open_boundary === -! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, -! if any. -MASKING_DEPTH = 0.0 ! [m] default = -9999.0 - ! The depth below which to mask points as land points, for which all fluxes are - ! zeroed out. MASKING_DEPTH is ignored if negative. -CHANNEL_CONFIG = "list" ! default = "none" - ! A parameter that determines which set of channels are - ! restricted to specific widths. Options are: - ! none - All channels have the grid width. - ! global_1deg - Sets 16 specific channels appropriate - ! for a 1-degree model, as used in CM2G. - ! list - Read the channel locations and widths from a - ! text file, like MOM_channel_list in the MOM_SIS - ! test case. - ! file - Read open face widths everywhere from a - ! NetCDF file on the model grid. -CHANNEL_LIST_FILE = "MOM_channels_SPEAR" ! default = "MOM_channel_list" - ! The file from which the list of narrowed channels is read. - -! === module MOM_verticalGrid === -! Parameters providing information about the vertical grid. -NK = 75 ! [nondim] - ! The number of model layers. - -! === module MOM_tracer_registry === - -! === module MOM_EOS === -TFREEZE_FORM = "MILLERO_78" ! default = "LINEAR" - ! TFREEZE_FORM determines which expression should be used for the freezing - ! point. Currently, the valid choices are "LINEAR", "MILLERO_78", "TEOS10" - -! === module MOM_restart === -PARALLEL_RESTARTFILES = True ! [Boolean] default = False - ! If true, each processor writes its own restart file, otherwise a single - ! restart file is generated - -! === module MOM_tracer_flow_control === -USE_IDEAL_AGE_TRACER = False ! [Boolean] default = False - ! If true, use the ideal_age_example tracer package. - -! === module ideal_age_example === - -! === module MOM_coord_initialization === -COORD_CONFIG = "file" ! default = "none" - ! This specifies how layers are to be defined: - ! ALE or none - used to avoid defining layers in ALE mode - ! file - read coordinate information from the file - ! specified by (COORD_FILE). - ! BFB - Custom coords for buoyancy-forced basin case - ! based on SST_S, T_BOT and DRHO_DT. - ! linear - linear based on interfaces not layers - ! layer_ref - linear based on layer densities - ! ts_ref - use reference temperature and salinity - ! ts_range - use range of temperature and salinity - ! (T_REF and S_REF) to determine surface density - ! and GINT calculate internal densities. - ! gprime - use reference density (RHO_0) for surface - ! density and GINT calculate internal densities. - ! ts_profile - use temperature and salinity profiles - ! (read from COORD_FILE) to set layer densities. - ! USER - call a user modified routine. -COORD_FILE = "layer_coord.nc" ! - ! The file from which the coordinate densities are read. -REMAP_UV_USING_OLD_ALG = True ! [Boolean] default = False - ! If true, uses the old remapping-via-a-delta-z method for remapping u and v. If - ! false, uses the new method that remaps between grids described by an old and - ! new thickness. -REGRIDDING_COORDINATE_MODE = "HYCOM1" ! default = "LAYER" - ! Coordinate mode for vertical regridding. Choose among the following - ! possibilities: LAYER - Isopycnal or stacked shallow water layers - ! ZSTAR, Z* - stretched geopotential z* - ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf - ! SIGMA - terrain following coordinates - ! RHO - continuous isopycnal - ! HYCOM1 - HyCOM-like hybrid coordinate - ! SLIGHT - stretched coordinates above continuous isopycnal - ! ADAPTIVE - optimize for smooth neutral density surfaces -BOUNDARY_EXTRAPOLATION = True ! [Boolean] default = False - ! When defined, a proper high-order reconstruction scheme is used within - ! boundary cells rather than PCM. E.g., if PPM is used for remapping, a PPM - ! reconstruction will also be used within boundary cells. -ALE_COORDINATE_CONFIG = "HYBRID:hycom1_75_800m.nc,sigma2,FNC1:2,4000,4.5,.01" ! default = "UNIFORM" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter ALE_RESOLUTION - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz -!ALE_RESOLUTION = 7*2.0, 2*2.01, 2.02, 2.03, 2.05, 2.08, 2.11, 2.15, 2.21, 2.2800000000000002, 2.37, 2.48, 2.61, 2.77, 2.95, 3.17, 3.4299999999999997, 3.74, 4.09, 4.49, 4.95, 5.48, 6.07, 6.74, 7.5, 8.34, 9.280000000000001, 10.33, 11.49, 12.77, 14.19, 15.74, 17.450000000000003, 19.31, 21.35, 23.56, 25.97, 28.580000000000002, 31.41, 34.47, 37.77, 41.32, 45.14, 49.25, 53.65, 58.370000000000005, 63.42, 68.81, 74.56, 80.68, 87.21000000000001, 94.14, 101.51, 109.33, 117.62, 126.4, 135.68, 145.5, 155.87, 166.81, 178.35, 190.51, 203.31, 216.78, 230.93, 245.8, 261.42, 277.83 ! [m] - ! The distribution of vertical resolution for the target - ! grid used for Eulerian-like coordinates. For example, - ! in z-coordinate mode, the parameter is a list of level - ! thicknesses (in m). In sigma-coordinate mode, the list - ! is of non-dimensional fractions of the water column. -!TARGET_DENSITIES = 1010.0, 1014.3034, 1017.8088, 1020.843, 1023.5566, 1025.813, 1027.0275, 1027.9114, 1028.6422, 1029.2795, 1029.852, 1030.3762, 1030.8626, 1031.3183, 1031.7486, 1032.1572, 1032.5471, 1032.9207, 1033.2798, 1033.6261, 1033.9608, 1034.2519, 1034.4817, 1034.6774, 1034.8508, 1035.0082, 1035.1533, 1035.2886, 1035.4159, 1035.5364, 1035.6511, 1035.7608, 1035.8661, 1035.9675, 1036.0645, 1036.1554, 1036.2411, 1036.3223, 1036.3998, 1036.4739, 1036.5451, 1036.6137, 1036.68, 1036.7441, 1036.8062, 1036.8526, 1036.8874, 1036.9164, 1036.9418, 1036.9647, 1036.9857, 1037.0052, 1037.0236, 1037.0409, 1037.0574, 1037.0738, 1037.0902, 1037.1066, 1037.123, 1037.1394, 1037.1558, 1037.1722, 1037.1887, 1037.206, 1037.2241, 1037.2435, 1037.2642, 1037.2866, 1037.3112, 1037.3389, 1037.3713, 1037.4118, 1037.475, 1037.6332, 1037.8104, 1038.0 ! [m] - ! HYBRID target densities for interfaces -MAXIMUM_INT_DEPTH_CONFIG = "FNC1:5,8000.0,1.0,.01" ! default = "NONE" - ! Determines how to specify the maximum interface depths. - ! Valid options are: - ! NONE - there are no maximum interface depths - ! PARAM - use the vector-parameter MAXIMUM_INTERFACE_DEPTHS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAXIMUM_INT_DEPTHS = 0.0, 5.0, 12.75, 23.25, 36.49, 52.480000000000004, 71.22, 92.71000000000001, 116.94000000000001, 143.92000000000002, 173.65, 206.13, 241.36, 279.33000000000004, 320.05000000000007, 363.5200000000001, 409.7400000000001, 458.7000000000001, 510.4100000000001, 564.8700000000001, 622.0800000000002, 682.0300000000002, 744.7300000000002, 810.1800000000003, 878.3800000000003, 949.3300000000004, 1023.0200000000004, 1099.4600000000005, 1178.6500000000005, 1260.5900000000006, 1345.2700000000007, 1432.7000000000007, 1522.8800000000008, 1615.8100000000009, 1711.490000000001, 1809.910000000001, 1911.080000000001, 2015.0000000000011, 2121.670000000001, 2231.080000000001, 2343.2400000000007, 2458.1500000000005, 2575.8100000000004, 2696.2200000000003, 2819.3700000000003, 2945.2700000000004, 3073.9200000000005, 3205.3200000000006, 3339.4600000000005, 3476.3500000000004, 3615.9900000000002, 3758.38, 3903.52, 4051.4, 4202.03, 4355.41, 4511.54, 4670.41, 4832.03, 4996.4, 5163.5199999999995, 5333.379999999999, 5505.989999999999, 5681.3499999999985, 5859.459999999998, 6040.319999999998, 6223.919999999998, 6410.269999999999, 6599.369999999999, 6791.219999999999, 6985.8099999999995, 7183.15, 7383.24, 7586.08, 7791.67, 8000.0 - ! The list of maximum depths for each interface. -MAX_LAYER_THICKNESS_CONFIG = "FNC1:400,31000.0,0.1,.01" ! default = "NONE" - ! Determines how to specify the maximum layer thicknesses. - ! Valid options are: - ! NONE - there are no maximum layer thicknesses - ! PARAM - use the vector-parameter MAX_LAYER_THICKNESS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAX_LAYER_THICKNESS = 400.0, 409.63, 410.32, 410.75, 411.07, 411.32, 411.52, 411.7, 411.86, 412.0, 412.13, 412.24, 412.35, 412.45, 412.54, 412.63, 412.71, 412.79, 412.86, 412.93, 413.0, 413.06, 413.12, 413.18, 413.24, 413.29, 413.34, 413.39, 413.44, 413.49, 413.54, 413.58, 413.62, 413.67, 413.71, 413.75, 413.78, 413.82, 413.86, 413.9, 413.93, 413.97, 414.0, 414.03, 414.06, 414.1, 414.13, 414.16, 414.19, 414.22, 414.24, 414.27, 414.3, 414.33, 414.35, 414.38, 414.41, 414.43, 414.46, 414.48, 414.51, 414.53, 414.55, 414.58, 414.6, 414.62, 414.65, 414.67, 414.69, 414.71, 414.73, 414.75, 414.77, 414.79, 414.83 ! [m] - ! The list of maximum thickness for each layer. -REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" - ! This sets the reconstruction scheme used for vertical remapping for all - ! variables. It can be one of the following schemes: PCM (1st-order - ! accurate) - ! PLM (2nd-order accurate) - ! PPM_H4 (3rd-order accurate) - ! PPM_IH4 (3rd-order accurate) - ! PQM_IH4IH3 (4th-order accurate) - ! PQM_IH6IH5 (5th-order accurate) - -! === module MOM_grid === -! Parameters providing information about the lateral grid. - -! === module MOM_state_initialization === -INIT_LAYERS_FROM_Z_FILE = True ! [Boolean] default = False - ! If true, initialize the layer thicknesses, temperatures, and salinities from a - ! Z-space file on a latitude-longitude grid. - -! === module MOM_initialize_layers_from_Z === -TEMP_SALT_Z_INIT_FILE = "MOM6_IC_TS.nc" ! default = "temp_salt_z.nc" - ! The name of the z-space input file used to initialize - ! temperatures (T) and salinities (S). If T and S are not - ! in the same file, TEMP_Z_INIT_FILE and SALT_Z_INIT_FILE - ! must be set. -Z_INIT_FILE_PTEMP_VAR = "temp" ! default = "ptemp" - ! The name of the potential temperature variable in - ! TEMP_Z_INIT_FILE. -Z_INIT_FILE_SALT_VAR = "salt" ! default = "salt" - ! The name of the salinity variable in - ! SALT_Z_INIT_FILE. -Z_INIT_ALE_REMAPPING = True ! [Boolean] default = False - ! If True, then remap straight to model coordinate from file. -Z_INIT_REMAP_OLD_ALG = True ! [Boolean] default = False - ! If false, uses the preferred remapping algorithm for initialization. If true, - ! use an older, less robust algorithm for remapping. - -! === module MOM_diag_mediator === -!Jiande NUM_DIAG_COORDS = 2 ! default = 1 -NUM_DIAG_COORDS = 1 - ! The number of diagnostic vertical coordinates to use. - ! For each coordinate, an entry in DIAG_COORDS must be provided. -!Jiande DIAG_COORDS = "z Z ZSTAR", "rho2 RHO2 RHO" ! -DIAG_COORDS = "z Z ZSTAR" - ! A list of string tuples associating diag_table modules to - ! a coordinate definition used for diagnostics. Each string - ! is of the form "MODULE_SUFFIX,PARAMETER_SUFFIX,COORDINATE_NAME". -DIAG_COORD_DEF_Z="FILE:@[MOM6_DIAG_COORD_DEF_Z_FILE],interfaces=zw" -DIAG_MISVAL = @[MOM6_DIAG_MISVAL] -!AVAILABLE_DIAGS_FILE = "available_diags.002160" ! default = "available_diags.000000" - ! A file into which to write a list of all available ocean diagnostics that can - ! be included in a diag_table. -!DIAG_COORD_DEF_Z = "FILE:vgrid_75_2m.nc,dz" ! default = "WOA09" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter DIAG_COORD_RES_Z - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz -!DIAG_COORD_DEF_RHO2 = "RFNC1:35,999.5,1028,1028.5,8.,1038.,0.0078125" ! default = "WOA09" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter DIAG_COORD_RES_RHO2 - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz - -! === module MOM_MEKE === -USE_MEKE = True ! [Boolean] default = False - ! If true, turns on the MEKE scheme which calculates a sub-grid mesoscale eddy - ! kinetic energy budget. -MEKE_GMCOEFF = 1.0 ! [nondim] default = -1.0 - ! The efficiency of the conversion of potential energy into MEKE by the - ! thickness mixing parameterization. If MEKE_GMCOEFF is negative, this - ! conversion is not used or calculated. -MEKE_BGSRC = 1.0E-13 ! [W kg-1] default = 0.0 - ! A background energy source for MEKE. -MEKE_KHTH_FAC = 0.8 ! [nondim] default = 0.0 - ! A factor that maps MEKE%Kh to KhTh. -MEKE_KHTR_FAC = 0.8 ! [nondim] default = 0.0 - ! A factor that maps MEKE%Kh to KhTr. -MEKE_ALPHA_RHINES = 0.05 ! [nondim] default = 0.0 - ! If positive, is a coefficient weighting the Rhines scale in the expression for - ! mixing length used in MEKE-derived diffusivity. -MEKE_ALPHA_EADY = 0.05 ! [nondim] default = 0.0 - ! If positive, is a coefficient weighting the Eady length scale in the - ! expression for mixing length used in MEKE-derived diffusivity. - -! === module MOM_lateral_mixing_coeffs === -USE_VARIABLE_MIXING = True ! [Boolean] default = False - ! If true, the variable mixing code will be called. This allows diagnostics to - ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or - ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter - ! file. -RESOLN_SCALED_KH = True ! [Boolean] default = False - ! If true, the Laplacian lateral viscosity is scaled away when the first - ! baroclinic deformation radius is well resolved. -RESOLN_SCALED_KHTH = True ! [Boolean] default = False - ! If true, the interface depth diffusivity is scaled away when the first - ! baroclinic deformation radius is well resolved. -KHTR_SLOPE_CFF = 0.25 ! [nondim] default = 0.0 - ! The nondimensional coefficient in the Visbeck formula for the epipycnal tracer - ! diffusivity -USE_STORED_SLOPES = True ! [Boolean] default = False - ! If true, the isopycnal slopes are calculated once and stored for re-use. This - ! uses more memory but avoids calling the equation of state more times than - ! should be necessary. -KH_RES_FN_POWER = 100 ! [nondim] default = 2 - ! The power of dx/Ld in the Kh resolution function. Any positive integer may be - ! used, although even integers are more efficient to calculate. Setting this - ! greater than 100 results in a step-function being used. -VISC_RES_FN_POWER = 2 ! [nondim] default = 100 - ! The power of dx/Ld in the Kh resolution function. Any positive integer may be - ! used, although even integers are more efficient to calculate. Setting this - ! greater than 100 results in a step-function being used. This function affects - ! lateral viscosity, Kh, and not KhTh. -INTERNAL_WAVE_SPEED_BETTER_EST = False ! [Boolean] default = True - ! If true, use a more robust estimate of the first mode wave speed as the - ! starting point for iterations. - -! === module MOM_set_visc === -CHANNEL_DRAG = True ! [Boolean] default = False - ! If true, the bottom drag is exerted directly on each layer proportional to the - ! fraction of the bottom it overlies. -HBBL = 10.0 ! [m] - ! The thickness of a bottom boundary layer with a viscosity of KVBBL if - ! BOTTOMDRAGLAW is not defined, or the thickness over which near-bottom - ! velocities are averaged for the drag law if BOTTOMDRAGLAW is defined but - ! LINEAR_DRAG is not. -DRAG_BG_VEL = 0.1 ! [m s-1] default = 0.0 - ! DRAG_BG_VEL is either the assumed bottom velocity (with LINEAR_DRAG) or an - ! unresolved velocity that is combined with the resolved velocity to estimate - ! the velocity magnitude. DRAG_BG_VEL is only used when BOTTOMDRAGLAW is - ! defined. -BBL_USE_EOS = True ! [Boolean] default = False - ! If true, use the equation of state in determining the properties of the bottom - ! boundary layer. Otherwise use the layer target potential densities. -BBL_THICK_MIN = 0.1 ! [m] default = 0.0 - ! The minimum bottom boundary layer thickness that can be used with - ! BOTTOMDRAGLAW. This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum - ! near-bottom viscosity. -KV = 1.0E-04 ! [m2 s-1] - ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 - ! m2 s-1, may be used. -KV_BBL_MIN = 0.0 ! [m2 s-1] default = 1.0E-04 - ! The minimum viscosities in the bottom boundary layer. -KV_TBL_MIN = 0.0 ! [m2 s-1] default = 1.0E-04 - ! The minimum viscosities in the top boundary layer. - -! === module MOM_thickness_diffuse === -USE_GM_WORK_BUG = True ! [Boolean] default = False - ! If true, compute the top-layer work tendency on the u-grid with the incorrect - ! sign, for legacy reproducibility. - -! === module MOM_dynamics_split_RK2 === - -! === module MOM_continuity === - -! === module MOM_continuity_PPM === -ETA_TOLERANCE = 1.0E-06 ! [m] default = 3.75E-09 - ! The tolerance for the differences between the barotropic and baroclinic - ! estimates of the sea surface height due to the fluxes through each face. The - ! total tolerance for SSH is 4 times this value. The default is - ! 0.5*NK*ANGSTROM, and this should not be set less than about - ! 10^-15*MAXIMUM_DEPTH. -ETA_TOLERANCE_AUX = 0.001 ! [m] default = 1.0E-06 - ! The tolerance for free-surface height discrepancies between the barotropic - ! solution and the sum of the layer thicknesses when calculating the auxiliary - ! corrected velocities. By default, this is the same as ETA_TOLERANCE, but can - ! be made larger for efficiency. - -! === module MOM_CoriolisAdv === -CORIOLIS_SCHEME = "SADOURNY75_ENSTRO" ! default = "SADOURNY75_ENERGY" - ! CORIOLIS_SCHEME selects the discretization for the Coriolis terms. Valid - ! values are: - ! SADOURNY75_ENERGY - Sadourny, 1975; energy cons. - ! ARAKAWA_HSU90 - Arakawa & Hsu, 1990 - ! SADOURNY75_ENSTRO - Sadourny, 1975; enstrophy cons. - ! ARAKAWA_LAMB81 - Arakawa & Lamb, 1981; En. + Enst. - ! ARAKAWA_LAMB_BLEND - A blend of Arakawa & Lamb with - ! Arakawa & Hsu and Sadourny energy -BOUND_CORIOLIS = True ! [Boolean] default = False - ! If true, the Coriolis terms at u-points are bounded by the four estimates of - ! (f+rv)v from the four neighboring v-points, and similarly at v-points. This - ! option would have no effect on the SADOURNY Coriolis scheme if it were - ! possible to use centered difference thickness fluxes. - -! === module MOM_PressureForce === - -! === module MOM_PressureForce_AFV === -MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False - ! If true, use mass weighting when interpolating T/S for integrals near the - ! bathymetry in AFV pressure gradient calculations. - -! === module MOM_hor_visc === -LAPLACIAN = True ! [Boolean] default = False - ! If true, use a Laplacian horizontal viscosity. -SMAGORINSKY_KH = True ! [Boolean] default = False - ! If true, use a Smagorinsky nonlinear eddy viscosity. -SMAG_LAP_CONST = 0.15 ! [nondim] default = 0.0 - ! The nondimensional Laplacian Smagorinsky constant, often 0.15. -AH_VEL_SCALE = 0.05 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the cube of the grid spacing to - ! calculate the biharmonic viscosity. The final viscosity is the largest of this - ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. -SMAGORINSKY_AH = True ! [Boolean] default = False - ! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity. -SMAG_BI_CONST = 0.06 ! [nondim] default = 0.0 - ! The nondimensional biharmonic Smagorinsky constant, typically 0.015 - 0.06. -USE_KH_BG_2D = True ! [Boolean] default = False - ! If true, read a file containing 2-d background harmonic viscosities. The final - ! viscosity is the maximum of the other terms and this background value. - -! === module MOM_vert_friction === -HMIX_FIXED = 0.5 ! [m] - ! The prescribed depth over which the near-surface viscosity and diffusivity are - ! elevated when the bulk mixed layer is not used. -KVML = 1.0E-04 ! [m2 s-1] default = 1.0E-04 - ! The kinematic viscosity in the mixed layer. A typical value is ~1e-2 m2 s-1. - ! KVML is not used if BULKMIXEDLAYER is true. The default is set by KV. -MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 - ! The maximum velocity allowed before the velocity components are truncated. - -! === module MOM_barotropic === -BOUND_BT_CORRECTION = True ! [Boolean] default = False - ! If true, the corrective pseudo mass-fluxes into the barotropic solver are - ! limited to values that require less than maxCFL_BT_cont to be accommodated. -BT_PROJECT_VELOCITY = True ! [Boolean] default = False - ! If true, step the barotropic velocity first and project out the velocity - ! tendency by 1+BEBT when calculating the transport. The default (false) is to - ! use a predictor continuity step to find the pressure field, and then to do a - ! corrector continuity step using a weighted average of the old and new - ! velocities, with weights of (1-BEBT) and BEBT. -BT_STRONG_DRAG = True ! [Boolean] default = False - ! If true, use a stronger estimate of the retarding effects of strong bottom - ! drag, by making it implicit with the barotropic time-step instead of implicit - ! with the baroclinic time-step and dividing by the number of barotropic steps. -BEBT = 0.2 ! [nondim] default = 0.1 - ! BEBT determines whether the barotropic time stepping uses the forward-backward - ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range - ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 - ! (for a backward Euler treatment). In practice, BEBT must be greater than about - ! 0.05. -DTBT = -0.9 ! [s or nondim] default = -0.98 - ! The barotropic time step, in s. DTBT is only used with the split explicit time - ! stepping. To set the time step automatically based the maximum stable value - ! use 0, or a negative value gives the fraction of the stable value. Setting - ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will - ! actually be used is an integer fraction of DT, rounding down. - -! === module MOM_mixed_layer_restrat === -MIXEDLAYER_RESTRAT = True ! [Boolean] default = False - ! If true, a density-gradient dependent re-stratifying flow is imposed in the - ! mixed layer. Can be used in ALE mode without restriction but in layer mode can - ! only be used if BULKMIXEDLAYER is true. -FOX_KEMPER_ML_RESTRAT_COEF = 60.0 ! [nondim] default = 0.0 - ! A nondimensional coefficient that is proportional to the ratio of the - ! deformation radius to the dominant lengthscale of the submesoscale mixed layer - ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic - ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of - ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. - ! (2010) -MLE_USE_PBL_MLD = True ! [Boolean] default = False - ! If true, the MLE parameterization will use the mixed-layer depth provided by - ! the active PBL parameterization. If false, MLE will estimate a MLD based on a - ! density difference with the surface using the parameter MLE_DENSITY_DIFF. -MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 - ! The time-scale for a running-mean filter applied to the mixed-layer depth used - ! in the MLE restratification parameterization. When the MLD deepens below the - ! current running-mean the running-mean is instantaneously set to the current - ! MLD. - -! === module MOM_diabatic_driver === -! The following parameters are used for diabatic processes. -ENERGETICS_SFC_PBL = True ! [Boolean] default = False - ! If true, use an implied energetics planetary boundary layer scheme to - ! determine the diffusivity and viscosity in the surface boundary layer. -EPBL_IS_ADDITIVE = False ! [Boolean] default = True - ! If true, the diffusivity from ePBL is added to all other diffusivities. - ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. -KD_MIN_TR = 2.0E-06 ! [m2 s-1] default = 2.0E-06 - ! A minimal diffusivity that should always be applied to tracers, especially in - ! massless layers near the bottom. The default is 0.1*KD. - -! === module MOM_CVMix_KPP === -! This is the MOM wrapper to CVMix:KPP -! See http://cvmix.github.io/ - -! === module MOM_tidal_mixing === -! Vertical Tidal Mixing Parameterization -INT_TIDE_DISSIPATION = True ! [Boolean] default = False - ! If true, use an internal tidal dissipation scheme to drive diapycnal mixing, - ! along the lines of St. Laurent et al. (2002) and Simmons et al. (2004). -INT_TIDE_PROFILE = "POLZIN_09" ! default = "STLAURENT_02" - ! INT_TIDE_PROFILE selects the vertical profile of energy dissipation with - ! INT_TIDE_DISSIPATION. Valid values are: - ! STLAURENT_02 - Use the St. Laurent et al exponential - ! decay profile. - ! POLZIN_09 - Use the Polzin WKB-stretched algebraic - ! decay profile. -KAPPA_ITIDES = 6.28319E-04 ! [m-1] default = 6.283185307179586E-04 - ! A topographic wavenumber used with INT_TIDE_DISSIPATION. The default is 2pi/10 - ! km, as in St.Laurent et al. 2002. -KAPPA_H2_FACTOR = 0.84 ! [nondim] default = 1.0 - ! A scaling factor for the roughness amplitude with INT_TIDE_DISSIPATION. -TKE_ITIDE_MAX = 0.1 ! [W m-2] default = 1000.0 - ! The maximum internal tide energy source available to mix above the bottom - ! boundary layer with INT_TIDE_DISSIPATION. -READ_TIDEAMP = True ! [Boolean] default = False - ! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude - ! with INT_TIDE_DISSIPATION. -TIDEAMP_FILE = "tidal_amplitude.nc" ! default = "tideamp.nc" - ! The path to the file containing the spatially varying tidal amplitudes with - ! INT_TIDE_DISSIPATION. -H2_FILE = "topog.nc" ! - ! The path to the file containing the sub-grid-scale topographic roughness - ! amplitude with INT_TIDE_DISSIPATION. - -! === module MOM_CVMix_conv === -! Parameterization of enhanced mixing due to convection via CVMix - -! === module MOM_set_diffusivity === -BBL_MIXING_AS_MAX = False ! [Boolean] default = True - ! If true, take the maximum of the diffusivity from the BBL mixing and the other - ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added. -USE_LOTW_BBL_DIFFUSIVITY = True ! [Boolean] default = False - ! If true, uses a simple, imprecise but non-coordinate dependent, model of BBL - ! mixing diffusivity based on Law of the Wall. Otherwise, uses the original BBL - ! scheme. -SIMPLE_TKE_TO_KD = True ! [Boolean] default = False - ! If true, uses a simple estimate of Kd/TKE that will work for arbitrary - ! vertical coordinates. If false, calculates Kd/TKE and bounds based on exact - ! energetics for an isopycnal layer-formulation. - -! === module MOM_bkgnd_mixing === -! Adding static vertical background mixing coefficients -KD = 2.0E-05 ! [m2 s-1] default = 0.0 - ! The background diapycnal diffusivity of density in the interior. Zero or the - ! molecular value, ~1e-7 m2 s-1, may be used. -KD_MIN = 2.0E-06 ! [m2 s-1] default = 2.0E-07 - ! The minimum diapycnal diffusivity. -HENYEY_IGW_BACKGROUND = True ! [Boolean] default = False - ! If true, use a latitude-dependent scaling for the near surface background - ! diffusivity, as described in Harrison & Hallberg, JPO 2008. -KD_MAX = 0.1 ! [m2 s-1] default = -1.0 - ! The maximum permitted increment for the diapycnal diffusivity from TKE-based - ! parameterizations, or a negative value for no limit. - -! === module MOM_kappa_shear === -! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 -USE_JACKSON_PARAM = True ! [Boolean] default = False - ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing - ! parameterization. -MAX_RINO_IT = 25 ! [nondim] default = 50 - ! The maximum number of iterations that may be used to estimate the Richardson - ! number driven mixing. -VERTEX_SHEAR = False ! [Boolean] default = False - ! If true, do the calculations of the shear-driven mixing - ! at the cell vertices (i.e., the vorticity points). -KD_TRUNC_KAPPA_SHEAR = 2.0E-07 ! [m2 s-1] default = 2.0E-07 - ! The value of shear-driven diffusivity that is considered negligible and is - ! rounded down to 0. The default is 1% of KD_KAPPA_SHEAR_0. -KAPPA_SHEAR_ITER_BUG = True ! [Boolean] default = False - ! If true, use an older, dimensionally inconsistent estimate of the derivative - ! of diffusivity with energy in the Newton's method iteration. The bug causes - ! undercorrections when dz > 1 m. -KAPPA_SHEAR_ALL_LAYER_TKE_BUG = True ! [Boolean] default = False - ! If true, report back the latest estimate of TKE instead of the time average - ! TKE when there is mass in all layers. Otherwise always report the time - ! averaged TKE, as is currently done when there are some massless layers. - -! === module MOM_CVMix_shear === -! Parameterization of shear-driven turbulence via CVMix (various options) - -! === module MOM_CVMix_ddiff === -! Parameterization of mixing due to double diffusion processes via CVMix - -! === module MOM_diabatic_aux === -! The following parameters are used for auxiliary diabatic processes. -PRESSURE_DEPENDENT_FRAZIL = False ! [Boolean] default = False - ! If true, use a pressure dependent freezing temperature when making frazil. The - ! default is false, which will be faster but is inappropriate with ice-shelf - ! cavities. -VAR_PEN_SW = True ! [Boolean] default = False - ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine - ! the e-folding depth of incoming short wave radiation. -CHL_FILE = @[CHLCLIM] ! - ! CHL_FILE is the file containing chl_a concentrations in the variable CHL_A. It - ! is used when VAR_PEN_SW and CHL_FROM_FILE are true. - -! === module MOM_energetic_PBL === -ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0 - ! When setting the decay scale for turbulence, use this fraction of the absolute - ! rotation rate blended with the local value of f, as sqrt((1-of)*f^2 + - ! of*4*omega^2). -TKE_DECAY = 0.01 ! [nondim] default = 2.5 - ! TKE_DECAY relates the vertical rate of decay of the TKE available for - ! mechanical entrainment to the natural Ekman depth. -EPBL_MSTAR_SCHEME = "OM4" ! default = "CONSTANT" - ! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are: - ! CONSTANT - Use a fixed mstar given by MSTAR - ! OM4 - Use L_Ekman/L_Obukhov in the sabilizing limit, as in OM4 - ! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018. -MSTAR_CAP = 10.0 ! [nondim] default = -1.0 - ! If this value is positive, it sets the maximum value of mstar allowed in ePBL. - ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT). -MSTAR2_COEF1 = 0.29 ! [nondim] default = 0.3 - ! Coefficient in computing mstar when rotation and stabilizing effects are both - ! important (used if EPBL_MSTAR_SCHEME = OM4). -MSTAR2_COEF2 = 0.152 ! [nondim] default = 0.085 - ! Coefficient in computing mstar when only rotation limits the total mixing - ! (used if EPBL_MSTAR_SCHEME = OM4) -NSTAR = 0.06 ! [nondim] default = 0.2 - ! The portion of the buoyant potential energy imparted by surface fluxes that is - ! available to drive entrainment at the base of mixed layer when that energy is - ! positive. -MSTAR_CONV_ADJ = 0.667 ! [nondim] default = 0.0 - ! Coefficient used for reducing mstar during convection due to reduction of - ! stable density gradient. -USE_MLD_ITERATION = False ! [Boolean] default = True - ! A logical that specifies whether or not to use the distance to the bottom of - ! the actively turbulent boundary layer to help set the EPBL length scale. -EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1 - ! A scale for the mixing length in the transition layer at the edge of the - ! boundary layer as a fraction of the boundary layer thickness. -MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0 - ! The exponent applied to the ratio of the distance to the MLD and the MLD depth - ! which determines the shape of the mixing length. This is only used if - ! USE_MLD_ITERATION is True. -USE_LA_LI2016 = @[MOM6_USE_LI2016] ! [nondim] default = False - ! A logical to use the Li et al. 2016 (submitted) formula to determine the - ! Langmuir number. -USE_WAVES = @[MOM6_USE_WAVES] ! [Boolean] default = False - ! If true, enables surface wave modules. -WAVE_METHOD = "SURFACE_BANDS" ! default = "EMPTY" - ! Choice of wave method, valid options include: - ! TEST_PROFILE - Prescribed from surface Stokes drift - ! and a decay wavelength. - ! SURFACE_BANDS - Computed from multiple surface values - ! and decay wavelengths. - ! DHH85 - Uses Donelan et al. 1985 empirical - ! wave spectrum with prescribed values. - ! LF17 - Infers Stokes drift profile from wind - ! speed following Li and Fox-Kemper 2017. -SURFBAND_SOURCE = "COUPLER" ! default = "EMPTY" - ! Choice of SURFACE_BANDS data mode, valid options include: - ! DATAOVERRIDE - Read from NetCDF using FMS DataOverride. - ! COUPLER - Look for variables from coupler pass - ! INPUT - Testing with fixed values. -STK_BAND_COUPLER = 3 ! default = 1 - ! STK_BAND_COUPLER is the number of Stokes drift bands in the coupler. This has - ! to be consistent with the number of Stokes drift bands in WW3, or the model - ! will fail. -SURFBAND_WAVENUMBERS = 0.04, 0.11, 0.3305 ! [rad/m] default = 0.12566 - ! Central wavenumbers for surface Stokes drift bands. -EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" - ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. - ! Valid values are: - ! NONE - Do not do any extra mixing due to Langmuir turbulence - ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir - ! turbulence - ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other - ! contributions -LT_ENHANCE_COEF = 0.044 ! [nondim] default = 0.447 - ! Coefficient for Langmuir enhancement of mstar -LT_ENHANCE_EXP = -1.5 ! [nondim] default = -1.33 - ! Exponent for Langmuir enhancementt of mstar -LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 - ! Coefficient for modification of Langmuir number due to MLD approaching Ekman - ! depth. -LT_MOD_LAC4 = 0.0 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! stable Obukhov depth. -LT_MOD_LAC5 = 0.22 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! unstable Obukhov depth. - -! === module MOM_regularize_layers === - -! === module MOM_opacity === -PEN_SW_NBANDS = 3 ! default = 1 - ! The number of bands of penetrating shortwave radiation. - -! === module MOM_tracer_advect === -TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" - ! The horizontal transport scheme for tracers: - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) - ! PPM - Piecewise Parabolic Method (Colella-Woodward) - -! === module MOM_tracer_hor_diff === -CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False - ! If true, use enough iterations the diffusion to ensure that the diffusive - ! equivalent of the CFL limit is not violated. If false, always use the greater - ! of 1 or MAX_TR_DIFFUSION_CFL iteration. - -! === module MOM_neutral_diffusion === -! This module implements neutral diffusion of tracers -USE_NEUTRAL_DIFFUSION = True ! [Boolean] default = False - ! If true, enables the neutral diffusion module. - -! === module MOM_lateral_boundary_diffusion === -! This module implements lateral diffusion of tracers near boundaries - -! === module MOM_sum_output === -CALCULATE_APE = False ! [Boolean] default = True - ! If true, calculate the available potential energy of the interfaces. Setting - ! this to false reduces the memory footprint of high-PE-count models - ! dramatically. -MAXTRUNC = 100000 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 - ! to stop if there is any truncation of velocities. -ENERGYSAVEDAYS = 0.25 ! [days] default = 1.0 - ! The interval in units of TIMEUNIT between saves of the energies of the run and - ! other globally summed diagnostics. - -! === module ocean_model_init === - -! === module MOM_oda_incupd === -ODA_INCUPD = @[ODA_INCUPD] ! [Boolean] default = False - ! If true, oda incremental updates will be applied - ! everywhere in the domain. -ODA_INCUPD_FILE = "mom6_increment.nc" ! The name of the file with the T,S,h increments. - -ODA_TEMPINC_VAR = "Temp" ! default = "ptemp_inc" - ! The name of the potential temperature inc. variable in - ! ODA_INCUPD_FILE. -ODA_SALTINC_VAR = "Salt" ! default = "sal_inc" - ! The name of the salinity inc. variable in - ! ODA_INCUPD_FILE. -ODA_THK_VAR = "h" ! default = "h" - ! The name of the int. depth inc. variable in - ! ODA_INCUPD_FILE. -ODA_INCUPD_UV = true ! -ODA_UINC_VAR = "u" ! default = "u_inc" - ! The name of the zonal vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -ODA_VINC_VAR = "v" ! default = "v_inc" - ! The name of the meridional vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -ODA_INCUPD_NHOURS = @[ODA_INCUPD_NHOURS] ! default=3.0 - -! === module MOM_surface_forcing === -OCEAN_SURFACE_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the surface velocity field that is - ! returned to the coupler. Valid values include - ! 'A', 'B', or 'C'. - -MAX_P_SURF = 0.0 ! [Pa] default = -1.0 - ! The maximum surface pressure that can be exerted by the atmosphere and - ! floating sea-ice or ice shelves. This is needed because the FMS coupling - ! structure does not limit the water that can be frozen out of the ocean and the - ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a - ! negative value is used. -WIND_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the input wind stress field. Valid - ! values are 'A', 'B', or 'C'. -CD_TIDES = 0.0018 ! [nondim] default = 1.0E-04 - ! The drag coefficient that applies to the tides. -GUST_CONST = 0.02 ! [Pa] default = 0.0 - ! The background gustiness in the winds. -FIX_USTAR_GUSTLESS_BUG = False ! [Boolean] default = True - ! If true correct a bug in the time-averaging of the gustless wind friction - ! velocity -! === module ocean_stochastics === -DO_SPPT = @[DO_OCN_SPPT] ! [Boolean] default = False - ! If true perturb the diabatic tendencies in MOM_diabatic_driver -PERT_EPBL = @[PERT_EPBL] ! [Boolean] default = False - ! If true perturb the KE dissipation and destruction in MOM_energetic_PBL - -! === module MOM_restart === - -! === module MOM_file_parser === diff --git a/parm/ufs/mom6/MOM_input_template_500 b/parm/ufs/mom6/MOM_input_template_500 deleted file mode 100644 index dde805d247..0000000000 --- a/parm/ufs/mom6/MOM_input_template_500 +++ /dev/null @@ -1,592 +0,0 @@ -! This file was written by the model and records the non-default parameters used at run-time. -! === module MOM === - -! === module MOM_unit_scaling === -! Parameters for doing unit scaling of variables. -USE_REGRIDDING = True ! [Boolean] default = False - ! If True, use the ALE algorithm (regridding/remapping). If False, use the - ! layered isopycnal algorithm. -THICKNESSDIFFUSE = True ! [Boolean] default = False - ! If true, interface heights are diffused with a coefficient of KHTH. -THICKNESSDIFFUSE_FIRST = True ! [Boolean] default = False - ! If true, do thickness diffusion before dynamics. This is only used if - ! THICKNESSDIFFUSE is true. -DT = @[DT_DYNAM_MOM6] ! [s] - ! The (baroclinic) dynamics time step. The time-step that is actually used will - ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode - ! or the coupling timestep in coupled mode.) -DT_THERM = @[DT_THERM_MOM6] ! [s] default = 1800.0 - ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be - ! an integer multiple of DT and less than the forcing or coupling time-step, - ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer - ! multiple of the coupling timestep. By default DT_THERM is set to DT. -THERMO_SPANS_COUPLING = @[MOM6_THERMO_SPAN] ! [Boolean] default = False - ! If true, the MOM will take thermodynamic and tracer timesteps that can be - ! longer than the coupling timestep. The actual thermodynamic timestep that is - ! used in this case is the largest integer multiple of the coupling timestep - ! that is less than or equal to DT_THERM. -HFREEZE = 20.0 ! [m] default = -1.0 - ! If HFREEZE > 0, melt potential will be computed. The actual depth - ! over which melt potential is computed will be min(HFREEZE, OBLD) - ! where OBLD is the boundary layer depth. If HFREEZE <= 0 (default) - ! melt potential will not be computed. -FRAZIL = True ! [Boolean] default = False - ! If true, water freezes if it gets too cold, and the accumulated heat deficit - ! is returned in the surface state. FRAZIL is only used if - ! ENABLE_THERMODYNAMICS is true. -BOUND_SALINITY = True ! [Boolean] default = False - ! If true, limit salinity to being positive. (The sea-ice model may ask for more - ! salt than is available and drive the salinity negative otherwise.) - -! === module MOM_domains === -TRIPOLAR_N = True ! [Boolean] default = False - ! Use tripolar connectivity at the northern edge of the domain. With - ! TRIPOLAR_N, NIGLOBAL must be even. -NIGLOBAL = @[NX_GLB] ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NJGLOBAL = @[NY_GLB] ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. - -! === module MOM_hor_index === -! Sets the horizontal array index types. - -! === module MOM_fixed_initialization === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = True - ! If true, use an older algorithm to calculate the sine and - ! cosines needed rotate between grid-oriented directions and - ! true north and east. Differences arise at the tripolar fold -USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = True - ! If true, use older code that incorrectly sets the longitude in some points - ! along the tripolar fold to be off by 360 degrees. -TOPO_CONFIG = "file" ! - ! This specifies how bathymetry is specified: - ! file - read bathymetric information from the file - ! specified by (TOPO_FILE). - ! flat - flat bottom set to MAXIMUM_DEPTH. - ! bowl - an analytically specified bowl-shaped basin - ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. - ! spoon - a similar shape to 'bowl', but with an vertical - ! wall at the southern face. - ! halfpipe - a zonally uniform channel with a half-sine - ! profile in the meridional direction. - ! bbuilder - build topography from list of functions. - ! benchmark - use the benchmark test case topography. - ! Neverworld - use the Neverworld test case topography. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a slope and channel configuration for the - ! ISOMIP test case. - ! DOME2D - use a shelf and slope configuration for the - ! DOME2D gravity current/overflow test case. - ! Kelvin - flat but with rotated land mask. - ! seamount - Gaussian bump for spontaneous motion test case. - ! dumbbell - Sloshing channel with reservoirs on both ends. - ! shelfwave - exponential slope for shelfwave test case. - ! Phillips - ACC-like idealized topography used in the Phillips config. - ! dense - Denmark Strait-like dense water formation and overflow. - ! USER - call a user modified routine. -TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" - ! The file from which the bathymetry is read. -!MAXIMUM_DEPTH = 5801.341919389728 ! [m] - ! The (diagnosed) maximum depth of the ocean. -MINIMUM_DEPTH = 10.0 ! [m] default = 0.0 - ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is - ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is - ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than - ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. - -! === module MOM_open_boundary === -! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, -! if any. -MASKING_DEPTH = 0.0 ! [m] default = -9999.0 - ! The depth below which to mask points as land points, for which all fluxes are - ! zeroed out. MASKING_DEPTH is ignored if negative. - -! === module MOM_verticalGrid === -! Parameters providing information about the vertical grid. -NK = 25 ! [nondim] - ! The number of model layers. - -! === module MOM_tracer_registry === - -! === module MOM_EOS === -TFREEZE_FORM = "MILLERO_78" ! default = "LINEAR" - ! TFREEZE_FORM determines which expression should be used for the freezing - ! point. Currently, the valid choices are "LINEAR", "MILLERO_78", "TEOS10" - -! === module MOM_restart === -RESTART_CHECKSUMS_REQUIRED = False -! === module MOM_tracer_flow_control === - -! === module MOM_coord_initialization === -COORD_CONFIG = "file" ! default = "none" - ! This specifies how layers are to be defined: - ! ALE or none - used to avoid defining layers in ALE mode - ! file - read coordinate information from the file - ! specified by (COORD_FILE). - ! BFB - Custom coords for buoyancy-forced basin case - ! based on SST_S, T_BOT and DRHO_DT. - ! linear - linear based on interfaces not layers - ! layer_ref - linear based on layer densities - ! ts_ref - use reference temperature and salinity - ! ts_range - use range of temperature and salinity - ! (T_REF and S_REF) to determine surface density - ! and GINT calculate internal densities. - ! gprime - use reference density (RHO_0) for surface - ! density and GINT calculate internal densities. - ! ts_profile - use temperature and salinity profiles - ! (read from COORD_FILE) to set layer densities. - ! USER - call a user modified routine. -COORD_FILE = "layer_coord25.nc" ! - ! The file from which the coordinate densities are read. -REGRIDDING_COORDINATE_MODE = "HYCOM1" ! default = "LAYER" - ! Coordinate mode for vertical regridding. Choose among the following - ! possibilities: LAYER - Isopycnal or stacked shallow water layers - ! ZSTAR, Z* - stretched geopotential z* - ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf - ! SIGMA - terrain following coordinates - ! RHO - continuous isopycnal - ! HYCOM1 - HyCOM-like hybrid coordinate - ! SLIGHT - stretched coordinates above continuous isopycnal - ! ADAPTIVE - optimize for smooth neutral density surfaces -BOUNDARY_EXTRAPOLATION = True ! [Boolean] default = False - ! When defined, a proper high-order reconstruction scheme is used within - ! boundary cells rather than PCM. E.g., if PPM is used for remapping, a PPM - ! reconstruction will also be used within boundary cells. -ALE_COORDINATE_CONFIG = "HYBRID:hycom1_25.nc,sigma2,FNC1:5,4000,4.5,.01" ! default = "UNIFORM" - ! Determines how to specify the coordinate - ! resolution. Valid options are: - ! PARAM - use the vector-parameter ALE_RESOLUTION - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz -!ALE_RESOLUTION = 2*5.0, 5.01, 5.07, 5.25, 5.68, 6.55, 8.1, 10.66, 14.620000000000001, 20.450000000000003, 28.73, 40.1, 55.32, 75.23, 100.8, 133.09, 173.26, 222.62, 282.56, 354.62, 440.47, 541.87, 660.76, 799.1800000000001 ! [m] - ! The distribution of vertical resolution for the target - ! grid used for Eulerian-like coordinates. For example, - ! in z-coordinate mode, the parameter is a list of level - ! thicknesses (in m). In sigma-coordinate mode, the list - ! is of non-dimensional fractions of the water column. -!TARGET_DENSITIES = 1010.0, 1020.843017578125, 1027.0274658203125, 1029.279541015625, 1030.862548828125, 1032.1572265625, 1033.27978515625, 1034.251953125, 1034.850830078125, 1035.28857421875, 1035.651123046875, 1035.967529296875, 1036.2410888671875, 1036.473876953125, 1036.6800537109375, 1036.8525390625, 1036.9417724609375, 1037.0052490234375, 1037.057373046875, 1037.1065673828125, 1037.15576171875, 1037.2060546875, 1037.26416015625, 1037.3388671875, 1037.4749755859375, 1038.0 ! [m] - ! HYBRID target densities for itnerfaces -REGRID_COMPRESSIBILITY_FRACTION = 0.01 ! [not defined] default = 0.0 - ! When interpolating potential density profiles we can add - ! some artificial compressibility solely to make homogenous - ! regions appear stratified. -MAXIMUM_INT_DEPTH_CONFIG = "FNC1:5,8000.0,1.0,.125" ! default = "NONE" - ! Determines how to specify the maximum interface depths. - ! Valid options are: - ! NONE - there are no maximum interface depths - ! PARAM - use the vector-parameter MAXIMUM_INTERFACE_DEPTHS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAXIMUM_INT_DEPTHS = 0.0, 5.0, 36.25, 93.75, 177.5, 287.5, 423.75, 586.25, 775.0, 990.0, 1231.25, 1498.75, 1792.5, 2112.5, 2458.75, 2831.25, 3230.0, 3655.0, 4106.25, 4583.75, 5087.5, 5617.5, 6173.75, 6756.25, 7365.0, 8000.0 ! [m] - ! The list of maximum depths for each interface. -MAX_LAYER_THICKNESS_CONFIG = "FNC1:400,31000.0,0.1,.01" ! default = "NONE" - ! Determines how to specify the maximum layer thicknesses. - ! Valid options are: - ! NONE - there are no maximum layer thicknesses - ! PARAM - use the vector-parameter MAX_LAYER_THICKNESS - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,Z - ! FNC1:string - FNC1:dz_min,H_total,power,precision -!MAX_LAYER_THICKNESS = 400.0, 1094.2, 1144.02, 1174.81, 1197.42, 1215.4099999999999, 1230.42, 1243.3200000000002, 1254.65, 1264.78, 1273.94, 1282.31, 1290.02, 1297.17, 1303.85, 1310.1, 1316.0, 1321.5700000000002, 1326.85, 1331.87, 1336.67, 1341.25, 1345.6399999999999, 1349.85, 1353.88 ! [m] - ! The list of maximum thickness for each layer. -REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" - ! This sets the reconstruction scheme used for vertical remapping for all - ! variables. It can be one of the following schemes: PCM (1st-order - ! accurate) - ! PLM (2nd-order accurate) - ! PPM_H4 (3rd-order accurate) - ! PPM_IH4 (3rd-order accurate) - ! PQM_IH4IH3 (4th-order accurate) - ! PQM_IH6IH5 (5th-order accurate) - -! === module MOM_grid === -! Parameters providing information about the lateral grid. - -! === module MOM_state_initialization === -INIT_LAYERS_FROM_Z_FILE = True ! [Boolean] default = False - ! If true, initialize the layer thicknesses, temperatures, and salinities from a - ! Z-space file on a latitude-longitude grid. - -! === module MOM_initialize_layers_from_Z === -TEMP_SALT_Z_INIT_FILE = "" ! default = "temp_salt_z.nc" - ! The name of the z-space input file used to initialize - ! temperatures (T) and salinities (S). If T and S are not - ! in the same file, TEMP_Z_INIT_FILE and SALT_Z_INIT_FILE - ! must be set. -TEMP_Z_INIT_FILE = "woa18_decav_t00_01.nc" ! default = "" - ! The name of the z-space input file used to initialize - ! temperatures, only. -SALT_Z_INIT_FILE = "woa18_decav_s00_01.nc" ! default = "" - ! The name of the z-space input file used to initialize - ! temperatures, only. -Z_INIT_FILE_PTEMP_VAR = "t_an" ! default = "ptemp" - ! The name of the potential temperature variable in - ! TEMP_Z_INIT_FILE. -Z_INIT_FILE_SALT_VAR = "s_an" ! default = "salt" - ! The name of the salinity variable in - ! SALT_Z_INIT_FILE. -Z_INIT_ALE_REMAPPING = True ! [Boolean] default = False - ! If True, then remap straight to model coordinate from file. - -! === module MOM_diag_mediator === -NUM_DIAG_COORDS = 1 - ! The number of diagnostic vertical coordinates to use. - ! For each coordinate, an entry in DIAG_COORDS must be provided. -DIAG_COORDS = "z Z ZSTAR" - ! A list of string tuples associating diag_table modules to - ! a coordinate definition used for diagnostics. Each string - ! is of the form "MODULE_SUFFIX,PARAMETER_SUFFIX,COORDINATE_NAME". -DIAG_COORD_DEF_Z="FILE:@[MOM6_DIAG_COORD_DEF_Z_FILE],interfaces=zw" -DIAG_MISVAL = @[MOM6_DIAG_MISVAL] - -! === module MOM_MEKE === -USE_MEKE = True ! [Boolean] default = False - ! If true, turns on the MEKE scheme which calculates a sub-grid mesoscale eddy - ! kinetic energy budget. - -! === module MOM_lateral_mixing_coeffs === -USE_VARIABLE_MIXING = True ! [Boolean] default = False - ! If true, the variable mixing code will be called. This allows diagnostics to - ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or - ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter - ! file. -! === module MOM_set_visc === -CHANNEL_DRAG = True ! [Boolean] default = False - ! If true, the bottom drag is exerted directly on each layer proportional to the - ! fraction of the bottom it overlies. -HBBL = 10.0 ! [m] - ! The thickness of a bottom boundary layer with a viscosity of KVBBL if - ! BOTTOMDRAGLAW is not defined, or the thickness over which near-bottom - ! velocities are averaged for the drag law if BOTTOMDRAGLAW is defined but - ! LINEAR_DRAG is not. -KV = 1.0E-04 ! [m2 s-1] - ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 - ! m2 s-1, may be used. - -! === module MOM_continuity === - -! === module MOM_continuity_PPM === - -! === module MOM_CoriolisAdv === -CORIOLIS_SCHEME = "SADOURNY75_ENSTRO" ! default = "SADOURNY75_ENERGY" - ! CORIOLIS_SCHEME selects the discretization for the Coriolis terms. Valid - ! values are: - ! SADOURNY75_ENERGY - Sadourny, 1975; energy cons. - ! ARAKAWA_HSU90 - Arakawa & Hsu, 1990 - ! SADOURNY75_ENSTRO - Sadourny, 1975; enstrophy cons. - ! ARAKAWA_LAMB81 - Arakawa & Lamb, 1981; En. + Enst. - ! ARAKAWA_LAMB_BLEND - A blend of Arakawa & Lamb with - ! Arakawa & Hsu and Sadourny energy -BOUND_CORIOLIS = True ! [Boolean] default = False - ! If true, the Coriolis terms at u-points are bounded by the four estimates of - ! (f+rv)v from the four neighboring v-points, and similarly at v-points. This - ! option would have no effect on the SADOURNY Coriolis scheme if it were - ! possible to use centered difference thickness fluxes. - -! === module MOM_PressureForce === - -! === module MOM_PressureForce_AFV === -MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False - ! If true, use mass weighting when interpolating T/S for integrals near the - ! bathymetry in AFV pressure gradient calculations. - -! === module MOM_hor_visc === -LAPLACIAN = True ! [Boolean] default = False - ! If true, use a Laplacian horizontal viscosity. -KH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the grid spacing to calculate the - ! Laplacian viscosity. The final viscosity is the largest of this scaled - ! viscosity, the Smagorinsky and Leith viscosities, and KH. -KH_SIN_LAT = 2000.0 ! [m2 s-1] default = 0.0 - ! The amplitude of a latitudinally-dependent background viscosity of the form - ! KH_SIN_LAT*(SIN(LAT)**KH_PWR_OF_SINE). -SMAGORINSKY_KH = True ! [Boolean] default = False - ! If true, use a Smagorinsky nonlinear eddy viscosity. -SMAG_LAP_CONST = 0.15 ! [nondim] default = 0.0 - ! The nondimensional Laplacian Smagorinsky constant, often 0.15. -AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the cube of the grid spacing to - ! calculate the biharmonic viscosity. The final viscosity is the largest of this - ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. -SMAGORINSKY_AH = True ! [Boolean] default = False - ! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity. -SMAG_BI_CONST = 0.06 ! [nondim] default = 0.0 - ! The nondimensional biharmonic Smagorinsky constant, typically 0.015 - 0.06. -USE_LAND_MASK_FOR_HVISC = True ! [Boolean] default = False - ! If true, use Use the land mask for the computation of thicknesses at velocity - ! locations. This eliminates the dependence on arbitrary values over land or - ! outside of the domain. - -! === module MOM_vert_friction === -HMIX_FIXED = 0.5 ! [m] - ! The prescribed depth over which the near-surface viscosity and diffusivity are - ! elevated when the bulk mixed layer is not used. -KVML = 1.0E-04 ! [m2 s-1] default = 1.0E-04 - ! The kinematic viscosity in the mixed layer. A typical value is ~1e-2 m2 s-1. - ! KVML is not used if BULKMIXEDLAYER is true. The default is set by KV. -MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 - ! The maximum velocity allowed before the velocity components are truncated. - -! === module MOM_barotropic === -BOUND_BT_CORRECTION = True ! [Boolean] default = False - ! If true, the corrective pseudo mass-fluxes into the barotropic solver are - ! limited to values that require less than maxCFL_BT_cont to be accommodated. -BT_PROJECT_VELOCITY = True ! [Boolean] default = False - ! If true, step the barotropic velocity first and project out the velocity - ! tendency by 1+BEBT when calculating the transport. The default (false) is to - ! use a predictor continuity step to find the pressure field, and then to do a - ! corrector continuity step using a weighted average of the old and new - ! velocities, with weights of (1-BEBT) and BEBT. -DYNAMIC_SURFACE_PRESSURE = False ! [Boolean] default = False - ! If true, add a dynamic pressure due to a viscous ice shelf, for instance. -BEBT = 0.2 ! [nondim] default = 0.1 - ! BEBT determines whether the barotropic time stepping uses the forward-backward - ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range - ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 - ! (for a backward Euler treatment). In practice, BEBT must be greater than about - ! 0.05. -DTBT = -0.9 ! [s or nondim] default = -0.98 - ! The barotropic time step, in s. DTBT is only used with the split explicit time - ! stepping. To set the time step automatically based the maximum stable value - ! use 0, or a negative value gives the fraction of the stable value. Setting - ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will - ! actually be used is an integer fraction of DT, rounding down. - -! === module MOM_mixed_layer_restrat === -MIXEDLAYER_RESTRAT = False ! [Boolean] default = False - ! If true, a density-gradient dependent re-stratifying flow is imposed in the - ! mixed layer. Can be used in ALE mode without restriction but in layer mode can - ! only be used if BULKMIXEDLAYER is true. -FOX_KEMPER_ML_RESTRAT_COEF = 60.0 ! [nondim] default = 0.0 - ! A nondimensional coefficient that is proportional to the ratio of the - ! deformation radius to the dominant lengthscale of the submesoscale mixed layer - ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic - ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of - ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. - ! (2010) -MLE_FRONT_LENGTH = 200.0 ! [m] default = 0.0 - ! If non-zero, is the frontal-length scale used to calculate the upscaling of - ! buoyancy gradients that is otherwise represented by the parameter - ! FOX_KEMPER_ML_RESTRAT_COEF. If MLE_FRONT_LENGTH is non-zero, it is recommended - ! to set FOX_KEMPER_ML_RESTRAT_COEF=1.0. -MLE_USE_PBL_MLD = True ! [Boolean] default = False - ! If true, the MLE parameterization will use the mixed-layer depth provided by - ! the active PBL parameterization. If false, MLE will estimate a MLD based on a - ! density difference with the surface using the parameter MLE_DENSITY_DIFF. -MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 - ! The time-scale for a running-mean filter applied to the mixed-layer depth used - ! in the MLE restratification parameterization. When the MLD deepens below the - ! current running-mean the running-mean is instantaneously set to the current - ! MLD. - -! === module MOM_diabatic_driver === -! The following parameters are used for diabatic processes. -ENERGETICS_SFC_PBL = True ! [Boolean] default = False - ! If true, use an implied energetics planetary boundary layer scheme to - ! determine the diffusivity and viscosity in the surface boundary layer. -EPBL_IS_ADDITIVE = False ! [Boolean] default = True - ! If true, the diffusivity from ePBL is added to all other diffusivities. - ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. - -! === module MOM_CVMix_KPP === -! This is the MOM wrapper to CVMix:KPP -! See http://cvmix.github.io/ - -! === module MOM_tidal_mixing === -! Vertical Tidal Mixing Parameterization - -! === module MOM_CVMix_conv === -! Parameterization of enhanced mixing due to convection via CVMix - -! === module MOM_set_diffusivity === - -! === module MOM_bkgnd_mixing === -! Adding static vertical background mixing coefficients -KD = 1.5E-05 ! [m2 s-1] default = 0.0 - ! The background diapycnal diffusivity of density in the interior. Zero or the - ! molecular value, ~1e-7 m2 s-1, may be used. -KD_MIN = 2.0E-06 ! [m2 s-1] default = 2.0E-07 - ! The minimum diapycnal diffusivity. -HENYEY_IGW_BACKGROUND = True ! [Boolean] default = False - ! If true, use a latitude-dependent scaling for the near surface background - ! diffusivity, as described in Harrison & Hallberg, JPO 2008. - -! === module MOM_kappa_shear === -! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 -USE_JACKSON_PARAM = True ! [Boolean] default = False - ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing - ! parameterization. -MAX_RINO_IT = 25 ! [nondim] default = 50 - ! The maximum number of iterations that may be used to estimate the Richardson - ! number driven mixing. - -! === module MOM_CVMix_shear === -! Parameterization of shear-driven turbulence via CVMix (various options) - -! === module MOM_CVMix_ddiff === -! Parameterization of mixing due to double diffusion processes via CVMix - -! === module MOM_diabatic_aux === -! The following parameters are used for auxiliary diabatic processes. - -! === module MOM_energetic_PBL === -EPBL_USTAR_MIN = 1.45842E-18 ! [m s-1] - ! The (tiny) minimum friction velocity used within the ePBL code, derived from - ! OMEGA and ANGSTROM.. -USE_LA_LI2016 = @[MOM6_USE_LI2016] ! [nondim] default = False - ! A logical to use the Li et al. 2016 (submitted) formula to determine the - ! Langmuir number. -USE_WAVES = @[MOM6_USE_WAVES] ! [Boolean] default = False - ! If true, enables surface wave modules. -WAVE_METHOD = "SURFACE_BANDS" ! default = "EMPTY" - ! Choice of wave method, valid options include: - ! TEST_PROFILE - Prescribed from surface Stokes drift - ! and a decay wavelength. - ! SURFACE_BANDS - Computed from multiple surface values - ! and decay wavelengths. - ! DHH85 - Uses Donelan et al. 1985 empirical - ! wave spectrum with prescribed values. - ! LF17 - Infers Stokes drift profile from wind - ! speed following Li and Fox-Kemper 2017. -SURFBAND_SOURCE = "COUPLER" ! default = "EMPTY" - ! Choice of SURFACE_BANDS data mode, valid options include: - ! DATAOVERRIDE - Read from NetCDF using FMS DataOverride. - ! COUPLER - Look for variables from coupler pass - ! INPUT - Testing with fixed values. -STK_BAND_COUPLER = 3 ! default = 1 - ! STK_BAND_COUPLER is the number of Stokes drift bands in the coupler. This has - ! to be consistent with the number of Stokes drift bands in WW3, or the model - ! will fail. -SURFBAND_WAVENUMBERS = 0.04, 0.11, 0.3305 ! [rad/m] default = 0.12566 - ! Central wavenumbers for surface Stokes drift bands. -EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" - ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. - ! Valid values are: - ! NONE - Do not do any extra mixing due to Langmuir turbulence - ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir - ! turbulence - ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other - ! contributions -LT_ENHANCE_COEF = 0.044 ! [nondim] default = 0.447 - ! Coefficient for Langmuir enhancement of mstar -LT_ENHANCE_EXP = -1.5 ! [nondim] default = -1.33 - ! Exponent for Langmuir enhancementt of mstar -LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 - ! Coefficient for modification of Langmuir number due to MLD approaching Ekman - ! depth. -LT_MOD_LAC4 = 0.0 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! stable Obukhov depth. -LT_MOD_LAC5 = 0.22 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! unstable Obukhov depth. - -! === module MOM_regularize_layers === - -! === module MOM_opacity === - -! === module MOM_tracer_advect === -TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" - ! The horizontal transport scheme for tracers: - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) - ! PPM - Piecewise Parabolic Method (Colella-Woodward) - -! === module MOM_tracer_hor_diff === -KHTR = 50.0 ! [m2 s-1] default = 0.0 - ! The background along-isopycnal tracer diffusivity. -CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False - ! If true, use enough iterations the diffusion to ensure that the diffusive - ! equivalent of the CFL limit is not violated. If false, always use the greater - ! of 1 or MAX_TR_DIFFUSION_CFL iteration. -MAX_TR_DIFFUSION_CFL = 2.0 ! [nondim] default = -1.0 - ! If positive, locally limit the along-isopycnal tracer diffusivity to keep the - ! diffusive CFL locally at or below this value. The number of diffusive - ! iterations is often this value or the next greater integer. - -! === module MOM_neutral_diffusion === -! This module implements neutral diffusion of tracers -USE_NEUTRAL_DIFFUSION = True ! [Boolean] default = False - ! If true, enables the neutral diffusion module. - -! === module MOM_sum_output === -MAXTRUNC = 1000 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 - ! to stop if there is any truncation of velocities. - -! === module ocean_model_init === - -! === module MOM_oda_incupd === -ODA_INCUPD = @[ODA_INCUPD] ! [Boolean] default = False - ! If true, oda incremental updates will be applied - ! everywhere in the domain. -ODA_INCUPD_FILE = "mom6_increment.nc" ! The name of the file with the T,S,h increments. - -ODA_TEMPINC_VAR = "Temp" ! default = "ptemp_inc" - ! The name of the potential temperature inc. variable in - ! ODA_INCUPD_FILE. -ODA_SALTINC_VAR = "Salt" ! default = "sal_inc" - ! The name of the salinity inc. variable in - ! ODA_INCUPD_FILE. -ODA_THK_VAR = "h" ! default = "h" - ! The name of the int. depth inc. variable in - ! ODA_INCUPD_FILE. -ODA_INCUPD_UV = true ! -ODA_UINC_VAR = "u" ! default = "u_inc" - ! The name of the zonal vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -ODA_VINC_VAR = "v" ! default = "v_inc" - ! The name of the meridional vel. inc. variable in - ! ODA_INCUPD_UV_FILE. -ODA_INCUPD_NHOURS = @[ODA_INCUPD_NHOURS] ! default=3.0 - -! === module MOM_surface_forcing === -OCEAN_SURFACE_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the surface velocity field that is - ! returned to the coupler. Valid values include - ! 'A', 'B', or 'C'. - -MAX_P_SURF = 0.0 ! [Pa] default = -1.0 - ! The maximum surface pressure that can be exerted by the atmosphere and - ! floating sea-ice or ice shelves. This is needed because the FMS coupling - ! structure does not limit the water that can be frozen out of the ocean and the - ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a - ! negative value is used. -WIND_STAGGER = "A" ! default = "C" - ! A case-insensitive character string to indicate the - ! staggering of the input wind stress field. Valid - ! values are 'A', 'B', or 'C'. -! === module MOM_restart === - -! === module MOM_file_parser === diff --git a/parm/ufs/ufs.configure.atm.IN b/parm/ufs/ufs.configure.atm.IN deleted file mode 100644 index 3457d8cf53..0000000000 --- a/parm/ufs/ufs.configure.atm.IN +++ /dev/null @@ -1,22 +0,0 @@ -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -EARTH_component_list: ATM -EARTH_attributes:: - Verbosity = 0 -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 - Diagnostic = 0 -:: - -# Run Sequence # -runSeq:: - ATM -:: diff --git a/parm/ufs/ufs.configure.atm_aero.IN b/parm/ufs/ufs.configure.atm_aero.IN deleted file mode 100644 index 629cc156ce..0000000000 --- a/parm/ufs/ufs.configure.atm_aero.IN +++ /dev/null @@ -1,40 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: ATM CHM -EARTH_attributes:: - Verbosity = 0 -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 -:: - -# CHM # -CHM_model: @[chm_model] -CHM_petlist_bounds: @[chm_petlist_bounds] -CHM_omp_num_threads: @[chm_omp_num_threads] -CHM_attributes:: - Verbosity = 0 -:: - -# Run Sequence # -runSeq:: - @@[coupling_interval_fast_sec] - ATM phase1 - ATM -> CHM - CHM - CHM -> ATM - ATM phase2 - @ -:: diff --git a/parm/ufs/ufs.configure.blocked_atm_wav.IN b/parm/ufs/ufs.configure.blocked_atm_wav.IN deleted file mode 100644 index b68aa2e735..0000000000 --- a/parm/ufs/ufs.configure.blocked_atm_wav.IN +++ /dev/null @@ -1,41 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: ATM WAV -EARTH_attributes:: - Verbosity = max -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = max - DumpFields = true -:: - -# WAV # -WAV_model: @[wav_model] -WAV_petlist_bounds: @[wav_petlist_bounds] -WAV_omp_num_threads: @[wav_omp_num_threads] -WAV_attributes:: - Verbosity = max -:: - - - -# Run Sequence # -runSeq:: - @@[coupling_interval_sec] - ATM -> WAV - ATM - WAV - @ -:: diff --git a/parm/ufs/ufs.configure.cpld.IN b/parm/ufs/ufs.configure.cpld.IN deleted file mode 100644 index e473fb2a03..0000000000 --- a/parm/ufs/ufs.configure.cpld.IN +++ /dev/null @@ -1,122 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: MED ATM OCN ICE -EARTH_attributes:: - Verbosity = 0 -:: - -# MED # -MED_model: @[med_model] -MED_petlist_bounds: @[med_petlist_bounds] -MED_omp_num_threads: @[med_omp_num_threads] -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true -:: - -# OCN # -OCN_model: @[ocn_model] -OCN_petlist_bounds: @[ocn_petlist_bounds] -OCN_omp_num_threads: @[ocn_omp_num_threads] -OCN_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ocn = @[MESH_OCN_ICE] - use_coldstart = @[use_coldstart] - use_mommesh = @[use_mommesh] -:: - -# ICE # -ICE_model: @[ice_model] -ICE_petlist_bounds: @[ice_petlist_bounds] -ICE_omp_num_threads: @[ice_omp_num_threads] -ICE_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ice = @[MESH_OCN_ICE] - eps_imesh = @[eps_imesh] - stop_n = @[RESTART_N] - stop_option = nhours - stop_ymd = -999 -:: - -# CMEPS warm run sequence -runSeq:: -@@[coupling_interval_slow_sec] - MED med_phases_prep_ocn_avg - MED -> OCN :remapMethod=redist - OCN - @@[coupling_interval_fast_sec] - MED med_phases_prep_atm - MED med_phases_prep_ice - MED -> ATM :remapMethod=redist - MED -> ICE :remapMethod=redist - ATM - ICE - ATM -> MED :remapMethod=redist - MED med_phases_post_atm - ICE -> MED :remapMethod=redist - MED med_phases_post_ice - MED med_phases_ocnalb_run - MED med_phases_prep_ocn_accum - @ - OCN -> MED :remapMethod=redist - MED med_phases_post_ocn - MED med_phases_restart_write -@ -:: - -# CMEPS variables - -DRIVER_attributes:: -:: -MED_attributes:: - ATM_model = @[atm_model] - ICE_model = @[ice_model] - OCN_model = @[ocn_model] - coupling_mode = @[CPLMODE] - history_tile_atm = @[ATMTILESIZE] - pio_rearranger = box - ocean_albedo_limit = @[ocean_albedo_limit] -:: -ALLCOMP_attributes:: - ScalarFieldCount = 2 - ScalarFieldIdxGridNX = 1 - ScalarFieldIdxGridNY = 2 - ScalarFieldName = cpl_scalars - start_type = @[RUNTYPE] - restart_dir = RESTART/ - case_name = ufs.cpld - restart_n = @[RESTART_N] - restart_option = nhours - restart_ymd = -999 - dbug_flag = @[cap_dbug_flag] - stop_n = @[FHMAX] - stop_option = nhours - stop_ymd = -999 - orb_eccen = 1.e36 - orb_iyear = 2000 - orb_iyear_align = 2000 - orb_mode = fixed_year - orb_mvelp = 1.e36 - orb_obliq = 1.e36 -:: diff --git a/parm/ufs/ufs.configure.cpld_aero.IN b/parm/ufs/ufs.configure.cpld_aero.IN deleted file mode 100644 index d90d377006..0000000000 --- a/parm/ufs/ufs.configure.cpld_aero.IN +++ /dev/null @@ -1,134 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: MED ATM CHM OCN ICE -EARTH_attributes:: - Verbosity = 0 -:: - -# MED # -MED_model: @[med_model] -MED_petlist_bounds: @[med_petlist_bounds] -MED_omp_num_threads: @[med_omp_num_threads] -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true -:: - -# CHM # -CHM_model: @[chm_model] -CHM_petlist_bounds: @[chm_petlist_bounds] -CHM_omp_num_threads: @[chm_omp_num_threads] -CHM_attributes:: - Verbosity = 0 -:: - -# OCN # -OCN_model: @[ocn_model] -OCN_petlist_bounds: @[ocn_petlist_bounds] -OCN_omp_num_threads: @[ocn_omp_num_threads] -OCN_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ocn = @[MESH_OCN_ICE] - use_coldstart = @[use_coldstart] - use_mommesh = @[use_mommesh] -:: - -# ICE # -ICE_model: @[ice_model] -ICE_petlist_bounds: @[ice_petlist_bounds] -ICE_omp_num_threads: @[ice_omp_num_threads] -ICE_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ice = @[MESH_OCN_ICE] - eps_imesh = @[eps_imesh] - stop_n = @[RESTART_N] - stop_option = nhours - stop_ymd = -999 -:: - -# CMEPS warm run sequence -runSeq:: -@@[coupling_interval_slow_sec] - MED med_phases_prep_ocn_avg - MED -> OCN :remapMethod=redist - OCN - @@[coupling_interval_fast_sec] - MED med_phases_prep_atm - MED med_phases_prep_ice - MED -> ATM :remapMethod=redist - MED -> ICE :remapMethod=redist - ATM phase1 - ATM -> CHM - CHM - CHM -> ATM - ATM phase2 - ICE - ATM -> MED :remapMethod=redist - MED med_phases_post_atm - ICE -> MED :remapMethod=redist - MED med_phases_post_ice - MED med_phases_ocnalb_run - MED med_phases_prep_ocn_accum - @ - OCN -> MED :remapMethod=redist - MED med_phases_post_ocn - MED med_phases_restart_write -@ -:: - -# CMEPS variables - -DRIVER_attributes:: -:: -MED_attributes:: - ATM_model = @[atm_model] - ICE_model = @[ice_model] - OCN_model = @[ocn_model] - coupling_mode = @[CPLMODE] - history_tile_atm = @[ATMTILESIZE] - pio_rearranger = box - ocean_albedo_limit = @[ocean_albedo_limit] -:: -ALLCOMP_attributes:: - ScalarFieldCount = 2 - ScalarFieldIdxGridNX = 1 - ScalarFieldIdxGridNY = 2 - ScalarFieldName = cpl_scalars - start_type = @[RUNTYPE] - restart_dir = RESTART/ - case_name = ufs.cpld - restart_n = @[RESTART_N] - restart_option = nhours - restart_ymd = -999 - dbug_flag = @[cap_dbug_flag] - stop_n = @[FHMAX] - stop_option = nhours - stop_ymd = -999 - orb_eccen = 1.e36 - orb_iyear = 2000 - orb_iyear_align = 2000 - orb_mode = fixed_year - orb_mvelp = 1.e36 - orb_obliq = 1.e36 -:: diff --git a/parm/ufs/ufs.configure.cpld_aero_outerwave.IN b/parm/ufs/ufs.configure.cpld_aero_outerwave.IN deleted file mode 100644 index 23e7751112..0000000000 --- a/parm/ufs/ufs.configure.cpld_aero_outerwave.IN +++ /dev/null @@ -1,151 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: MED ATM CHM OCN ICE WAV -EARTH_attributes:: - Verbosity = 0 -:: - -# MED # -MED_model: @[med_model] -MED_petlist_bounds: @[med_petlist_bounds] -MED_omp_num_threads: @[med_omp_num_threads] -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true -:: - -# CHM # -CHM_model: @[chm_model] -CHM_petlist_bounds: @[chm_petlist_bounds] -CHM_omp_num_threads: @[chm_omp_num_threads] -CHM_attributes:: - Verbosity = 0 -:: - -# OCN # -OCN_model: @[ocn_model] -OCN_petlist_bounds: @[ocn_petlist_bounds] -OCN_omp_num_threads: @[ocn_omp_num_threads] -OCN_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ocn = @[MESH_OCN_ICE] - use_coldstart = @[use_coldstart] - use_mommesh = @[use_mommesh] -:: - -# ICE # -ICE_model: @[ice_model] -ICE_petlist_bounds: @[ice_petlist_bounds] -ICE_omp_num_threads: @[ice_omp_num_threads] -ICE_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ice = @[MESH_OCN_ICE] - eps_imesh = @[eps_imesh] - stop_n = @[RESTART_N] - stop_option = nhours - stop_ymd = -999 -:: - -# WAV # -WAV_model: @[wav_model] -WAV_petlist_bounds: @[wav_petlist_bounds] -WAV_omp_num_threads: @[wav_omp_num_threads] -WAV_attributes:: - Verbosity = 0 - OverwriteSlice = false - mesh_wav = @[MESH_WAV] -:: - -# CMEPS warm run sequence -runSeq:: -@@[coupling_interval_slow_sec] - MED med_phases_prep_wav_avg - MED med_phases_prep_ocn_avg - MED -> WAV :remapMethod=redist - MED -> OCN :remapMethod=redist - WAV - OCN - @@[coupling_interval_fast_sec] - MED med_phases_prep_atm - MED med_phases_prep_ice - MED -> ATM :remapMethod=redist - MED -> ICE :remapMethod=redist - ATM phase1 - ATM -> CHM - CHM - CHM -> ATM - ATM phase2 - ICE - ATM -> MED :remapMethod=redist - MED med_phases_post_atm - ICE -> MED :remapMethod=redist - MED med_phases_post_ice - MED med_phases_ocnalb_run - MED med_phases_prep_ocn_accum - MED med_phases_prep_wav_accum - @ - OCN -> MED :remapMethod=redist - WAV -> MED :remapMethod=redist - MED med_phases_post_ocn - MED med_phases_post_wav - MED med_phases_restart_write -@ -:: - -# CMEPS variables - -DRIVER_attributes:: -:: -MED_attributes:: - ATM_model = @[atm_model] - ICE_model = @[ice_model] - OCN_model = @[ocn_model] - WAV_model = @[wav_model] - coupling_mode = @[CPLMODE] - history_tile_atm = @[ATMTILESIZE] - pio_rearranger = box - ocean_albedo_limit = @[ocean_albedo_limit] -:: -ALLCOMP_attributes:: - ScalarFieldCount = 2 - ScalarFieldIdxGridNX = 1 - ScalarFieldIdxGridNY = 2 - ScalarFieldName = cpl_scalars - start_type = @[RUNTYPE] - restart_dir = RESTART/ - case_name = ufs.cpld - restart_n = @[RESTART_N] - restart_option = nhours - restart_ymd = -999 - dbug_flag = @[cap_dbug_flag] - stop_n = @[FHMAX] - stop_option = nhours - stop_ymd = -999 - orb_eccen = 1.e36 - orb_iyear = 2000 - orb_iyear_align = 2000 - orb_mode = fixed_year - orb_mvelp = 1.e36 - orb_obliq = 1.e36 -:: diff --git a/parm/ufs/ufs.configure.cpld_aero_wave.IN b/parm/ufs/ufs.configure.cpld_aero_wave.IN deleted file mode 100644 index ab0f6a9f8d..0000000000 --- a/parm/ufs/ufs.configure.cpld_aero_wave.IN +++ /dev/null @@ -1,151 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: MED ATM CHM OCN ICE WAV -EARTH_attributes:: - Verbosity = 0 -:: - -# MED # -MED_model: @[med_model] -MED_petlist_bounds: @[med_petlist_bounds] -MED_omp_num_threads: @[med_omp_num_threads] -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true -:: - -# CHM # -CHM_model: @[chm_model] -CHM_petlist_bounds: @[chm_petlist_bounds] -CHM_omp_num_threads: @[chm_omp_num_threads] -CHM_attributes:: - Verbosity = 0 -:: - -# OCN # -OCN_model: @[ocn_model] -OCN_petlist_bounds: @[ocn_petlist_bounds] -OCN_omp_num_threads: @[ocn_omp_num_threads] -OCN_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ocn = @[MESH_OCN_ICE] - use_coldstart = @[use_coldstart] - use_mommesh = @[use_mommesh] -:: - -# ICE # -ICE_model: @[ice_model] -ICE_petlist_bounds: @[ice_petlist_bounds] -ICE_omp_num_threads: @[ice_omp_num_threads] -ICE_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ice = @[MESH_OCN_ICE] - eps_imesh = @[eps_imesh] - stop_n = @[RESTART_N] - stop_option = nhours - stop_ymd = -999 -:: - -# WAV # -WAV_model: @[wav_model] -WAV_petlist_bounds: @[wav_petlist_bounds] -WAV_omp_num_threads: @[wav_omp_num_threads] -WAV_attributes:: - Verbosity = 0 - OverwriteSlice = false - mesh_wav = @[MESH_WAV] -:: - -# CMEPS warm run sequence -runSeq:: -@@[coupling_interval_slow_sec] - MED med_phases_prep_ocn_avg - MED -> OCN :remapMethod=redist - OCN - @@[coupling_interval_fast_sec] - MED med_phases_prep_atm - MED med_phases_prep_ice - MED med_phases_prep_wav_accum - MED med_phases_prep_wav_avg - MED -> ATM :remapMethod=redist - MED -> ICE :remapMethod=redist - MED -> WAV :remapMethod=redist - ATM phase1 - ATM -> CHM - CHM - CHM -> ATM - ATM phase2 - ICE - WAV - ATM -> MED :remapMethod=redist - MED med_phases_post_atm - ICE -> MED :remapMethod=redist - MED med_phases_post_ice - WAV -> MED :remapMethod=redist - MED med_phases_post_wav - MED med_phases_ocnalb_run - MED med_phases_prep_ocn_accum - @ - OCN -> MED :remapMethod=redist - MED med_phases_post_ocn - MED med_phases_restart_write -@ -:: - -# CMEPS variables - -DRIVER_attributes:: -:: -MED_attributes:: - ATM_model = @[atm_model] - ICE_model = @[ice_model] - OCN_model = @[ocn_model] - WAV_model = @[wav_model] - coupling_mode = @[CPLMODE] - history_tile_atm = @[ATMTILESIZE] - pio_rearranger = box - ocean_albedo_limit = @[ocean_albedo_limit] -:: -ALLCOMP_attributes:: - ScalarFieldCount = 2 - ScalarFieldIdxGridNX = 1 - ScalarFieldIdxGridNY = 2 - ScalarFieldName = cpl_scalars - start_type = @[RUNTYPE] - restart_dir = RESTART/ - case_name = ufs.cpld - restart_n = @[RESTART_N] - restart_option = nhours - restart_ymd = -999 - dbug_flag = @[cap_dbug_flag] - stop_n = @[FHMAX] - stop_option = nhours - stop_ymd = -999 - orb_eccen = 1.e36 - orb_iyear = 2000 - orb_iyear_align = 2000 - orb_mode = fixed_year - orb_mvelp = 1.e36 - orb_obliq = 1.e36 -:: diff --git a/parm/ufs/ufs.configure.cpld_outerwave.IN b/parm/ufs/ufs.configure.cpld_outerwave.IN deleted file mode 100644 index 9a45d5ff9a..0000000000 --- a/parm/ufs/ufs.configure.cpld_outerwave.IN +++ /dev/null @@ -1,139 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: MED ATM OCN ICE WAV -EARTH_attributes:: - Verbosity = 0 -:: - -# MED # -MED_model: @[med_model] -MED_petlist_bounds: @[med_petlist_bounds] -MED_omp_num_threads: @[med_omp_num_threads] -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true -:: - -# OCN # -OCN_model: @[ocn_model] -OCN_petlist_bounds: @[ocn_petlist_bounds] -OCN_omp_num_threads: @[ocn_omp_num_threads] -OCN_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ocn = @[MESH_OCN_ICE] - use_coldstart = @[use_coldstart] - use_mommesh = @[use_mommesh] -:: - -# ICE # -ICE_model: @[ice_model] -ICE_petlist_bounds: @[ice_petlist_bounds] -ICE_omp_num_threads: @[ice_omp_num_threads] -ICE_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ice = @[MESH_OCN_ICE] - eps_imesh = @[eps_imesh] - stop_n = @[RESTART_N] - stop_option = nhours - stop_ymd = -999 -:: - -# WAV # -WAV_model: @[wav_model] -WAV_petlist_bounds: @[wav_petlist_bounds] -WAV_omp_num_threads: @[wav_omp_num_threads] -WAV_attributes:: - Verbosity = 0 - OverwriteSlice = false - mesh_wav = @[MESH_WAV] -:: - -# CMEPS warm run sequence -runSeq:: -@@[coupling_interval_slow_sec] - MED med_phases_prep_wav_avg - MED med_phases_prep_ocn_avg - MED -> WAV :remapMethod=redist - MED -> OCN :remapMethod=redist - WAV - OCN - @@[coupling_interval_fast_sec] - MED med_phases_prep_atm - MED med_phases_prep_ice - MED -> ATM :remapMethod=redist - MED -> ICE :remapMethod=redist - ATM - ICE - ATM -> MED :remapMethod=redist - MED med_phases_post_atm - ICE -> MED :remapMethod=redist - MED med_phases_post_ice - MED med_phases_ocnalb_run - MED med_phases_prep_ocn_accum - MED med_phases_prep_wav_accum - @ - OCN -> MED :remapMethod=redist - WAV -> MED :remapMethod=redist - MED med_phases_post_ocn - MED med_phases_post_wav - MED med_phases_restart_write -@ -:: - -# CMEPS variables - -DRIVER_attributes:: -:: -MED_attributes:: - ATM_model = @[atm_model] - ICE_model = @[ice_model] - OCN_model = @[ocn_model] - WAV_model = @[wav_model] - coupling_mode = @[CPLMODE] - history_tile_atm = @[ATMTILESIZE] - pio_rearranger = box - ocean_albedo_limit = @[ocean_albedo_limit] -:: -ALLCOMP_attributes:: - ScalarFieldCount = 2 - ScalarFieldIdxGridNX = 1 - ScalarFieldIdxGridNY = 2 - ScalarFieldName = cpl_scalars - start_type = @[RUNTYPE] - restart_dir = RESTART/ - case_name = ufs.cpld - restart_n = @[RESTART_N] - restart_option = nhours - restart_ymd = -999 - dbug_flag = @[cap_dbug_flag] - stop_n = @[FHMAX] - stop_option = nhours - stop_ymd = -999 - orb_eccen = 1.e36 - orb_iyear = 2000 - orb_iyear_align = 2000 - orb_mode = fixed_year - orb_mvelp = 1.e36 - orb_obliq = 1.e36 -:: diff --git a/parm/ufs/ufs.configure.cpld_wave.IN b/parm/ufs/ufs.configure.cpld_wave.IN deleted file mode 100644 index 37a462a5d4..0000000000 --- a/parm/ufs/ufs.configure.cpld_wave.IN +++ /dev/null @@ -1,139 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: MED ATM OCN ICE WAV -EARTH_attributes:: - Verbosity = 0 -:: - -# MED # -MED_model: @[med_model] -MED_petlist_bounds: @[med_petlist_bounds] -MED_omp_num_threads: @[med_omp_num_threads] -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true -:: - -# OCN # -OCN_model: @[ocn_model] -OCN_petlist_bounds: @[ocn_petlist_bounds] -OCN_omp_num_threads: @[ocn_omp_num_threads] -OCN_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ocn = @[MESH_OCN_ICE] - use_coldstart = @[use_coldstart] - use_mommesh = @[use_mommesh] -:: - -# ICE # -ICE_model: @[ice_model] -ICE_petlist_bounds: @[ice_petlist_bounds] -ICE_omp_num_threads: @[ice_omp_num_threads] -ICE_attributes:: - Verbosity = 0 - DumpFields = @[DumpFields] - ProfileMemory = false - OverwriteSlice = true - mesh_ice = @[MESH_OCN_ICE] - eps_imesh = @[eps_imesh] - stop_n = @[RESTART_N] - stop_option = nhours - stop_ymd = -999 -:: - -# WAV # -WAV_model: @[wav_model] -WAV_petlist_bounds: @[wav_petlist_bounds] -WAV_omp_num_threads: @[wav_omp_num_threads] -WAV_attributes:: - Verbosity = 0 - OverwriteSlice = false - mesh_wav = @[MESH_WAV] -:: - -# CMEPS warm run sequence -runSeq:: -@@[coupling_interval_slow_sec] - MED med_phases_prep_ocn_avg - MED -> OCN :remapMethod=redist - OCN - @@[coupling_interval_fast_sec] - MED med_phases_prep_atm - MED med_phases_prep_ice - MED med_phases_prep_wav_accum - MED med_phases_prep_wav_avg - MED -> ATM :remapMethod=redist - MED -> ICE :remapMethod=redist - MED -> WAV :remapMethod=redist - ATM - ICE - WAV - ATM -> MED :remapMethod=redist - MED med_phases_post_atm - ICE -> MED :remapMethod=redist - MED med_phases_post_ice - WAV -> MED :remapMethod=redist - MED med_phases_post_wav - MED med_phases_ocnalb_run - MED med_phases_prep_ocn_accum - @ - OCN -> MED :remapMethod=redist - MED med_phases_post_ocn - MED med_phases_restart_write -@ -:: - -# CMEPS variables - -DRIVER_attributes:: -:: -MED_attributes:: - ATM_model = @[atm_model] - ICE_model = @[ice_model] - OCN_model = @[ocn_model] - WAV_model = @[wav_model] - coupling_mode = @[CPLMODE] - history_tile_atm = @[ATMTILESIZE] - pio_rearranger = box - ocean_albedo_limit = @[ocean_albedo_limit] -:: -ALLCOMP_attributes:: - ScalarFieldCount = 2 - ScalarFieldIdxGridNX = 1 - ScalarFieldIdxGridNY = 2 - ScalarFieldName = cpl_scalars - start_type = @[RUNTYPE] - restart_dir = RESTART/ - case_name = ufs.cpld - restart_n = @[RESTART_N] - restart_option = nhours - restart_ymd = -999 - dbug_flag = @[cap_dbug_flag] - stop_n = @[FHMAX] - stop_option = nhours - stop_ymd = -999 - orb_eccen = 1.e36 - orb_iyear = 2000 - orb_iyear_align = 2000 - orb_mode = fixed_year - orb_mvelp = 1.e36 - orb_obliq = 1.e36 -:: diff --git a/parm/ufs/ufs.configure.leapfrog_atm_wav.IN b/parm/ufs/ufs.configure.leapfrog_atm_wav.IN deleted file mode 100644 index ec22c9478c..0000000000 --- a/parm/ufs/ufs.configure.leapfrog_atm_wav.IN +++ /dev/null @@ -1,41 +0,0 @@ -############################################# -#### UFS Run-Time Configuration File ##### -############################################# - -# ESMF # -logKindFlag: @[esmf_logkind] -globalResourceControl: true - -# EARTH # -EARTH_component_list: ATM WAV -EARTH_attributes:: - Verbosity = max -:: - -# ATM # -ATM_model: @[atm_model] -ATM_petlist_bounds: @[atm_petlist_bounds] -ATM_omp_num_threads: @[atm_omp_num_threads] -ATM_attributes:: - Verbosity = max - DumpFields = true -:: - -# WAV # -WAV_model: @[wav_model] -WAV_petlist_bounds: @[wav_petlist_bounds] -WAV_omp_num_threads: @[wav_omp_num_threads] -WAV_attributes:: - Verbosity = max -:: - - - -# Run Sequence # -runSeq:: - @@[coupling_interval_slow_sec] - ATM - ATM -> WAV - WAV - @ -:: diff --git a/scripts/exglobal_forecast.sh b/scripts/exglobal_forecast.sh index c50cde74f1..eebc9e59c3 100755 --- a/scripts/exglobal_forecast.sh +++ b/scripts/exglobal_forecast.sh @@ -83,7 +83,7 @@ source "${HOMEgfs}/ush/preamble.sh" source "${HOMEgfs}/ush/forecast_predet.sh" # include functions for variable definition source "${HOMEgfs}/ush/forecast_det.sh" # include functions for run type determination source "${HOMEgfs}/ush/forecast_postdet.sh" # include functions for variables after run type determination -source "${HOMEgfs}/ush/ufs_configure.sh" # include functions for ufs.configure processing +source "${HOMEgfs}/ush/parsing_ufs_configure.sh" # include functions for ufs_configure processing source "${HOMEgfs}/ush/parsing_model_configure_FV3.sh" # Coupling control switches, for coupling purpose, off by default diff --git a/sorc/link_workflow.sh b/sorc/link_workflow.sh index d7604bf9ba..2e190e3285 100755 --- a/sorc/link_workflow.sh +++ b/sorc/link_workflow.sh @@ -150,25 +150,25 @@ for file in finddate.sh make_ntc_bull.pl make_NTC_file.pl make_tif.sh month_name ${LINK_OR_COPY} "${HOMEgfs}/sorc/gfs_utils.fd/ush/${file}" . done -# TODO: Link these ufs.configure templates from ufs-weather-model -#cd "${HOMEgfs}/parm/ufs" || exit 1 -#declare -a ufs_configure_files=("ufs.configure.atm.IN" \ -# "ufs.configure.atm_aero.IN" \ -# "ufs.configure.atmw.IN" \ -# "ufs.configure.blocked_atm_wav_2way.IN" \ -# "ufs.configure.blocked_atm_wav.IN" \ -# "ufs.configure.cpld_agrid.IN" \ -# "ufs.configure.cpld_esmfthreads.IN" \ -# "ufs.configure.cpld.IN" \ -# "ufs.configure.cpld_noaero.IN" \ -# "ufs.configure.cpld_noaero_nowave.IN" \ -# "ufs.configure.cpld_noaero_outwav.IN" \ -# "ufs.configure.leapfrog_atm_wav.IN") -#for file in "${ufs_configure_files[@]}"; do -# [[ -s "${file}" ]] && rm -f "${file}" -# ${LINK_OR_COPY} "${HOMEgfs}/sorc/ufs_model.fd/tests/parm/${file}" . -#done +# Link these templates from ufs-weather-model +cd "${HOMEgfs}/parm/ufs" || exit 1 +declare -a ufs_templates=("model_configure.IN" \ + "MOM_input_025.IN" "MOM_input_050.IN" "MOM_input_100.IN" "MOM_input_500.IN" \ + "MOM6_data_table.IN" \ + "ice_in.IN" \ + "ufs.configure.atm.IN" \ + "ufs.configure.atmaero.IN" \ + "ufs.configure.leapfrog_atm_wav.IN" \ + "ufs.configure.s2s_esmf.IN" \ + "ufs.configure.s2sa_esmf.IN" \ + "ufs.configure.s2sw_esmf.IN" \ + "ufs.configure.s2swa_esmf.IN" ) +for file in "${ufs_templates[@]}"; do + [[ -s "${file}" ]] && rm -f "${file}" + ${LINK_OR_COPY} "${HOMEgfs}/sorc/ufs_model.fd/tests/parm/${file}" . +done +# Link the script from ufs-weather-model that parses the templates cd "${HOMEgfs}/ush" || exit 1 [[ -s "atparse.bash" ]] && rm -f "atparse.bash" ${LINK_OR_COPY} "${HOMEgfs}/sorc/ufs_model.fd/tests/atparse.bash" . diff --git a/ush/forecast_postdet.sh b/ush/forecast_postdet.sh index f47755f854..02f69c63ed 100755 --- a/ush/forecast_postdet.sh +++ b/ush/forecast_postdet.sh @@ -44,11 +44,11 @@ FV3_postdet(){ done fi - # Need a coupler.res when doing IAU + # Need a coupler.res when doing IAU # FIXME: This is needed for warm_start, regardless of IAU. if [[ ${DOIAU} = "YES" ]]; then rm -f "${DATA}/INPUT/coupler.res" cat >> "${DATA}/INPUT/coupler.res" << EOF - 2 (Calendar: no_calendar=0, thirty_day_months=1, julian=2, gregorian=3, noleap=4) + 3 (Calendar: no_calendar=0, thirty_day_months=1, julian=2, gregorian=3, noleap=4) ${gPDY:0:4} ${gPDY:4:2} ${gPDY:6:2} ${gcyc} 0 0 Model start time: year, month, day, hour, minute, second ${sPDY:0:4} ${sPDY:4:2} ${sPDY:6:2} ${scyc} 0 0 Current model time: year, month, day, hour, minute, second EOF @@ -93,7 +93,9 @@ EOF ${NLN} "${file}" "${DATA}/INPUT/${file2}" done - local hour_rst=$(nhour "${CDATE_RST}" "${current_cycle}") + local hour_rst + hour_rst=$(nhour "${CDATE_RST}" "${current_cycle}") + # shellcheck disable=SC2034 IAU_FHROT=$((IAU_OFFSET+hour_rst)) if [[ ${DOIAU} = "YES" ]]; then IAUFHRS=-1 @@ -516,7 +518,7 @@ FV3_out() { ${NCP} "${DATA}/input.nml" "${COM_CONF}/ufs.input.nml" ${NCP} "${DATA}/model_configure" "${COM_CONF}/ufs.model_configure" ${NCP} "${DATA}/ufs.configure" "${COM_CONF}/ufs.ufs.configure" - ${NCP} "${DATA}/diag_table" "${COM_CONF}/ufs.diag_table" + ${NCP} "${DATA}/diag_table" "${COM_CONF}/ufs.diag_table" fi echo "SUB ${FUNCNAME[0]}: Output data for FV3 copied" } @@ -540,10 +542,9 @@ WW3_postdet() { fi - #if wave mesh is not the same as the ocn/ice mesh, linkk it in the file - local comparemesh=${MESH_OCN_ICE:-"mesh.mx${ICERES}.nc"} - if [[ "${MESH_WAV}" = "${comparemesh}" ]]; then - echo "Wave is on same mesh as ocean/ice" + #if wave mesh is not the same as the ocean mesh, link it in the file + if [[ "${MESH_WAV}" == "${MESH_OCN:-mesh.mx${OCNRES}.nc}" ]]; then + echo "Wave is on same mesh as ocean" else ${NLN} "${FIXwave}/${MESH_WAV}" "${DATA}/" fi @@ -879,31 +880,6 @@ MOM6_out() { CICE_postdet() { echo "SUB ${FUNCNAME[0]}: CICE after run type determination" - # TODO: These settings should be elevated to config.ice - histfreq_n=${histfreq_n:-6} - dumpfreq_n=${dumpfreq_n:-1000} # Set this to a really large value, as cice, mom6 and cmeps restart interval is controlled by ufs.configure - dumpfreq=${dumpfreq:-"y"} # "h","d","m" or "y" for restarts at intervals of "hours", "days", "months" or "years" - - if [[ "${RUN}" =~ "gdas" ]]; then - cice_hist_avg=".false., .false., .false., .false., .false." # DA needs instantaneous - else - cice_hist_avg=".true., .true., .true., .true., .true." # P8 wants averaged over histfreq_n - fi - - FRAZIL_FWSALT=${FRAZIL_FWSALT:-".true."} - ktherm=${ktherm:-2} - tfrz_option=${tfrz_option:-"'mushy'"} - tr_pond_lvl=${tr_pond_lvl:-".true."} # Use level melt ponds tr_pond_lvl=true - - # restart_pond_lvl (if tr_pond_lvl=true): - # -- if true, initialize the level ponds from restart (if runtype=continue) - # -- if false, re-initialize level ponds to zero (if runtype=initial or continue) - restart_pond_lvl=${restart_pond_lvl:-".false."} - - ice_grid_file=${ice_grid_file:-"grid_cice_NEMS_mx${ICERES}.nc"} - ice_kmt_file=${ice_kmt_file:-"kmtu_cice_NEMS_mx${ICERES}.nc"} - export MESH_OCN_ICE=${MESH_OCN_ICE:-"mesh.mx${ICERES}.nc"} - # Copy CICE ICs echo "Link CICE ICs" cice_restart_file="${COM_ICE_RESTART_PREV}/${sPDY}.${scyc}0000.cice_model.res.nc" @@ -917,9 +893,9 @@ CICE_postdet() { echo "${DATA}/cice_model.res.nc" > "${DATA}/ice.restart_file" echo "Link CICE fixed files" - ${NLN} "${FIXcice}/${ICERES}/${ice_grid_file}" "${DATA}/" - ${NLN} "${FIXcice}/${ICERES}/${ice_kmt_file}" "${DATA}/" - ${NLN} "${FIXcice}/${ICERES}/${MESH_OCN_ICE}" "${DATA}/" + ${NLN} "${FIXcice}/${ICERES}/${CICE_GRID}" "${DATA}/" + ${NLN} "${FIXcice}/${ICERES}/${CICE_MASK}" "${DATA}/" + ${NLN} "${FIXcice}/${ICERES}/${MESH_ICE}" "${DATA}/" # Link CICE output files if [[ ! -d "${COM_ICE_HISTORY}" ]]; then mkdir -p "${COM_ICE_HISTORY}"; fi @@ -941,7 +917,7 @@ CICE_postdet() { if [[ 10#${fhr} -eq 0 ]]; then ${NLN} "${COM_ICE_HISTORY}/iceic${vdate}.${ENSMEM}.${current_cycle}.nc" "${DATA}/CICE_OUTPUT/iceh_ic.${vdatestr}.nc" else - (( interval = fhr - last_fhr )) # Umm.. isn't this histfreq_n? + (( interval = fhr - last_fhr )) # Umm.. isn't this CICE_HISTFREQ_N in hours (currently set to FHOUT)? ${NLN} "${COM_ICE_HISTORY}/ice${vdate}.${ENSMEM}.${current_cycle}.nc" "${DATA}/CICE_OUTPUT/iceh_$(printf "%0.2d" "${interval}")h.${vdatestr}.nc" fi last_fhr=${fhr} diff --git a/ush/parsing_model_configure_DATM.sh b/ush/parsing_model_configure_DATM.sh deleted file mode 100755 index ecd3fa6dd6..0000000000 --- a/ush/parsing_model_configure_DATM.sh +++ /dev/null @@ -1,38 +0,0 @@ -#! /usr/bin/env bash - -##### -## "parsing_model_configure_DATM.sh" -## This script writes model configure file -## for DATM model -## -## This is the child script of ex-global forecast, -## writing model configure file for DATM -## This script is a direct execution. -##### - -DATM_model_configure(){ - -rm -f model_configure -cat > model_configure <> model_configure <> "${DATA}/model_configure" +echo "Rendered model_configure" +cat "${DATA}/model_configure" -quilting: ${QUILTING} -quilting_restart: .true. -write_groups: ${WRITE_GROUP:-1} -write_tasks_per_group: ${WRTTASK_PER_GROUP:-24} -itasks: 1 -output_history: ${OUTPUT_HISTORY:-".true."} -history_file_on_native_grid: .false. -write_dopost: ${WRITE_DOPOST:-".false."} -write_nsflip: ${WRITE_NSFLIP:-".false."} -num_files: ${NUM_FILES:-2} -filename_base: 'atm' 'sfc' -output_grid: ${OUTPUT_GRID} -output_file: '${OUTPUT_FILETYPE_ATM}' '${OUTPUT_FILETYPE_SFC}' -zstandard_level: 0 -ichunk2d: ${ichunk2d:-0} -jchunk2d: ${jchunk2d:-0} -ichunk3d: ${ichunk3d:-0} -jchunk3d: ${jchunk3d:-0} -kchunk3d: ${kchunk3d:-0} -ideflate: ${ideflate:-1} -quantize_mode: 'quantize_bitround' -quantize_nsd: ${QUANTIZE_NSD:-0} -imo: ${LONB_IMO} -jmo: ${LATB_JMO} -output_fh: ${FV3_OUTPUT_FH} -iau_offset: ${IAU_OFFSET:-0} -EOF - -echo "$(cat model_configure)" } diff --git a/ush/parsing_namelists_CICE.sh b/ush/parsing_namelists_CICE.sh index 6ef743ebc9..3f1798d3e9 100755 --- a/ush/parsing_namelists_CICE.sh +++ b/ush/parsing_namelists_CICE.sh @@ -2,6 +2,8 @@ # parsing namelist of CICE +# Disable variable not used warnings +# shellcheck disable=SC2034 CICE_namelists(){ # "warm_start" here refers to whether CICE model is warm starting or not. @@ -37,374 +39,80 @@ if (( $(( NY_GLB % NPY )) == 0 )); then else local block_size_y=$(( (NY_GLB / NPY) + 1 )) fi -local max_blocks=-1 local sec stepsperhr npt sec=$(to_seconds "${current_cycle:8:2}0000") stepsperhr=$((3600/ICETIM)) npt=$((FHMAX*stepsperhr)) # Need this in order for dump_last to work -cat > ice_in <> "${DATA}/ice_in" +echo "Rendered ice_in:" +cat "${DATA}/ice_in" } diff --git a/ush/parsing_namelists_FV3.sh b/ush/parsing_namelists_FV3.sh index 0d759e7570..83e0c10525 100755 --- a/ush/parsing_namelists_FV3.sh +++ b/ush/parsing_namelists_FV3.sh @@ -14,7 +14,7 @@ FV3_namelists(){ # setup the tables DIAG_TABLE=${DIAG_TABLE:-${HOMEgfs}/parm/ufs/fv3/diag_table} DIAG_TABLE_APPEND=${DIAG_TABLE_APPEND:-${HOMEgfs}/parm/ufs/fv3/diag_table_aod} -DATA_TABLE=${DATA_TABLE:-${HOMEgfs}/parm/ufs/fv3/data_table} +DATA_TABLE=${DATA_TABLE:-${HOMEgfs}/parm/ufs/MOM6_data_table.IN} FIELD_TABLE=${FIELD_TABLE:-${HOMEgfs}/parm/ufs/fv3/field_table} # ensure non-prognostic tracers are set diff --git a/ush/parsing_namelists_MOM6.sh b/ush/parsing_namelists_MOM6.sh index 8059096363..ca93edb526 100755 --- a/ush/parsing_namelists_MOM6.sh +++ b/ush/parsing_namelists_MOM6.sh @@ -1,15 +1,14 @@ #! /usr/bin/env bash +# Disable variable not used warnings +# shellcheck disable=SC2034 MOM6_namelists(){ # MOM6 namelists generation -if [[ "${cplwav}" == ".true." ]] ; then - local MOM6_USE_WAVES='True' -else - local MOM6_USE_WAVES='False' -fi - +# ================================================================ +# input.nml +# --------- cat >> input.nml <> input.nml <> input.nml <> input.nml < "${DATA}/INPUT/MOM_input" -rm "${DATA}/INPUT/MOM_input_template_${OCNRES}" +# ================================================================ +# MOM_input +# --------- +# Prepare local variables for use in MOM_input.IN from UFSWM +# The ones already defined are left commented as a reminder +# == MOM_domains section == +# NX_GLB +# NY_GLB +# == MOM section == +# DT_DYNAM_MOM6 +# DT_THERM_MOM6 +# MOM6_THERMO_SPAN +# == MOM_grid_init section == +local MOM6_TOPOEDITS=${TOPOEDITS} +# MOM6_ALLOW_LANDMASK_CHANGES +# == MOM_diag_mediator section == +# MOM6_DIAG_COORD_DEF_Z_FILE +# MOM6_DIAG_MISVAL +# == MOM_diabatic_aux section == +local MOM6_CHLCLIM=${CHLCLIM} +# == MOM_energetic_PBL section == +# MOM6_USE_LI2016 +if [[ "${cplwav}" == ".true." ]] ; then + local MOM6_USE_WAVES="True" +else + local MOM6_USE_WAVES="False" +fi +# == MOM_oda_incupd section == +local ODA_TEMPINC_VAR="Temp" +local ODA_SALTINC_VAR="Salt" +local ODA_THK_VAR="h" +local ODA_INCUPD_UV="True" +local ODA_UINC_VAR="u" +local ODA_VINC_VAR="v" +# ODA_INCUPD +# ODA_INCUPD_NHOURS +# == MOM_surface_forcing section == +# MOM6_RIVER_RUNOFF +# == ocean_stochastics section == +if [[ "${DO_OCN_SPPT}" == "YES" ]]; then + local DO_OCN_SPPT="True" # TODO: This is problematic if DO_OCN_SPPT is going to be used elsewhere +else + local DO_OCN_SPPT="False" +fi +if [[ "${DO_OCN_PERT_EPBL}" == "YES" ]]; then + local PERT_EPBL="True" +else + local PERT_EPBL="False" +fi +# Ensure the template exists +local template=${MOM6_INPUT_TEMPLATE:-"${HOMEgfs}/parm/ufs/MOM_input_${OCNRES}.IN"} +if [[ ! -f "${template}" ]]; then + echo "FATAL ERROR: template '${template}' does not exist, ABORT!" + exit 1 +fi +rm -f "${DATA}/INPUT/MOM_input" +atparse < "${template}" >> "${DATA}/INPUT/MOM_input" +echo "Rendered MOM_input:" +cat "${DATA}/INPUT/MOM_input" -#data table for runoff: -DATA_TABLE=${DATA_TABLE:-${HOMEgfs}/parm/ufs/fv3/data_table} -${NCP} "${DATA_TABLE}" "${DATA}/data_table_template" -sed -e "s/@\[FRUNOFF\]/${FRUNOFF}/g" "${DATA}/data_table_template" > "${DATA}/data_table" -rm "${DATA}/data_table_template" +# ================================================================ +# data_table +# ---------- +# Prepare local variables for use in MOM6_data_table.IN from UFSWM +local MOM6_FRUNOFF=${FRUNOFF} + +# Ensure the template exists +local template=${MOM6_DATA_TABLE_TEMPLATE:-"${HOMEgfs}/parm/ufs/MOM6_data_table.IN"} +if [[ ! -f "${template}" ]]; then + echo "FATAL ERROR: template '${template}' does not exist, ABORT!" + exit 1 +fi +rm -f "${DATA}/data_table" +atparse < "${template}" >> "${DATA}/data_table" +echo "Rendered data_table:" +cat "${DATA}/data_table" } diff --git a/ush/ufs_configure.sh b/ush/parsing_ufs_configure.sh similarity index 93% rename from ush/ufs_configure.sh rename to ush/parsing_ufs_configure.sh index 8898d11162..2071586905 100755 --- a/ush/ufs_configure.sh +++ b/ush/parsing_ufs_configure.sh @@ -17,8 +17,10 @@ writing_ufs_configure() { echo "SUB ${FUNCNAME[0]}: ufs.configure.sh begins" # Setup ufs.configure -local DumpFields=${NEMSDumpFields:-false} +local esmf_logkind=${esmf_logkind:-"ESMF_LOGKIND_MULTI"} #options: ESMF_LOGKIND_MULTI_ON_ERROR, ESMF_LOGKIND_MULTI, ESMF_LOGKIND_NONE +local DumpFields=${DumpFields:-false} local cap_dbug_flag=${cap_dbug_flag:-0} + # Determine "cmeps_run_type" based on the availability of the mediator restart file # If it is a warm_start, we already copied the mediator restart to DATA, if it was present # If the mediator restart was not present, despite being a "warm_start", we put out a WARNING @@ -29,7 +31,6 @@ else local cmeps_run_type='startup' fi -local esmf_logkind=${esmf_logkind:-"ESMF_LOGKIND_MULTI"} #options: ESMF_LOGKIND_MULTI_ON_ERROR, ESMF_LOGKIND_MULTI, ESMF_LOGKIND_NONE # Atm-related local atm_model="fv3" @@ -53,12 +54,14 @@ if [[ "${cplflx}" = ".true." ]]; then local ocn_petlist_bounds="${ATMPETS} $(( ATMPETS+OCNPETS-1 ))" local ocn_omp_num_threads="${OCNTHREADS}" local RUNTYPE="${cmeps_run_type}" + local CMEPS_RESTART_DIR="RESTART/" local CPLMODE="${cplmode}" local coupling_interval_fast_sec="${CPL_FAST}" local RESTART_N="${restart_interval}" local ocean_albedo_limit=0.06 local ATMTILESIZE="${CASE:1}" local ocean_albedo_limit=0.06 + local pio_rearranger=${pio_rearranger:-"box"} fi if [[ "${cplice}" = ".true." ]]; then @@ -66,7 +69,6 @@ if [[ "${cplice}" = ".true." ]]; then local ice_model="cice6" local ice_petlist_bounds="$(( ATMPETS+OCNPETS )) $(( ATMPETS+OCNPETS+ICEPETS-1 ))" local ice_omp_num_threads="${ICETHREADS}" - local MESH_OCN_ICE=${MESH_OCN_ICE:-"mesh.mx${ICERES}.nc"} local FHMAX="${FHMAX_GFS}" # TODO: How did this get in here hard-wired to FHMAX_GFS? fi @@ -76,6 +78,7 @@ if [[ "${cplwav}" = ".true." ]]; then local wav_petlist_bounds="$(( ATMPETS+OCNPETS+ICEPETS )) $(( ATMPETS+OCNPETS+ICEPETS+WAVPETS-1 ))" local wav_omp_num_threads="${WAVTHREADS}" local MULTIGRID="${waveMULTIGRID}" + local WW3_user_sets_restname="false" fi @@ -84,7 +87,7 @@ if [[ "${cplchm}" = ".true." ]]; then local chm_model="gocart" local chm_petlist_bounds="0 $(( CHMPETS-1 ))" local chm_omp_num_threads="${CHMTHREADS}" - local coupling_interval_fast_sec="${CPL_FAST}" + local coupling_interval_sec="${CPL_FAST}" fi