From 090c55d2f8439f19858c0676de5fa984e6d9e40d Mon Sep 17 00:00:00 2001 From: Mahesh Binzer-Panchal Date: Wed, 12 Jun 2024 08:59:15 +0000 Subject: [PATCH] Add format validation skeleton --- main.nf | 7 ++++++- subworkflows/format_validation/main.nf | 0 2 files changed, 6 insertions(+), 1 deletion(-) create mode 100644 subworkflows/format_validation/main.nf diff --git a/main.nf b/main.nf index c4451ace..a2eac736 100644 --- a/main.nf +++ b/main.nf @@ -1,11 +1,12 @@ #! /usr/bin/env nextflow -nextflow.enable.dsl = 2 +// nextflow.enable.dsl = 2 include { ABINITIO_TRAINING } from "$projectDir/subworkflows/abinitio_training/main" include { ANNOTATION_PREPROCESSING } from "$projectDir/subworkflows/annotation_preprocessing/main" include { FUNCTIONAL_ANNOTATION } from "$projectDir/subworkflows/functional_annotation/main" include { TRANSCRIPT_ASSEMBLY } from "$projectDir/subworkflows/transcript_assembly/main" +include { FORMAT_VALIDATION } from "$projectDir/subworkflows/format_validation/main" workflow { @@ -41,6 +42,10 @@ workflow { if ( params.subworkflow == 'transcript_assembly' ){ TRANSCRIPT_ASSEMBLY() } + + if ( params.subworkflow == 'format_validation' ) { + FORMAT_VALIDATION() + } } workflow.onComplete { diff --git a/subworkflows/format_validation/main.nf b/subworkflows/format_validation/main.nf new file mode 100644 index 00000000..e69de29b