-
Notifications
You must be signed in to change notification settings - Fork 0
/
lstm+encoder mul-OFEA.py
787 lines (663 loc) · 28.9 KB
/
lstm+encoder mul-OFEA.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
import torch
import torch.nn as nn
import torch.optim as optim
import os
import numpy as np
from sklearn.metrics import f1_score
from torchtext import data, datasets
from sklearn import metrics
from numba import jit
#from apex import amp
from Warmup import adjust_learning_rate
from sklearn.metrics import confusion_matrix
import torch.nn.functional as Fn
from sklearn.metrics import matthews_corrcoef
from torch.autograd import Variable
base_dir = os.path.abspath(os.path.join(os.getcwd()))
atis_data = os.path.join(base_dir, 'data')
import random
import torch.nn.functional as F
import time
DEVICE = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
SEED = 1234
random.seed(SEED)
torch.manual_seed(SEED)
torch.cuda.manual_seed(SEED)
torch.backends.cudnn.deterministic = True
torch.backends.cudnn.benchmark = False
DEVICE = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
'''
build train and val dataset
'''
tokenize = lambda s: s.split()
os.environ['CUDA_LAUNCH_BLOCKING'] = '1'
SOURCE = data.Field(sequential=True, tokenize=tokenize,
lower=True, use_vocab=True,
init_token=None,
pad_token='<pad>', unk_token=None,
batch_first=True, fix_length=2160,
include_lengths=True) # include_lengths=True为方便之后使用torch的pack_padded_sequence
YUFA = data.Field(sequential=True, tokenize=tokenize,
lower=True, use_vocab=True,
init_token=None,
pad_token='<pad>', unk_token=None,
batch_first=True, fix_length=240,
include_lengths=True) # include_lengths=True为方便之后使用torch的pack_padded_sequence
LABEL = data.Field(
sequential=False, unk_token=None,
use_vocab=True)
train, val, test = data.TabularDataset.splits(
path=atis_data,
skip_header=True,
train='biosfa3L.train.csv',
validation='biosfa3L.test.csv',
test='biosfa3L.valid.csv',
format='csv',
fields=[('source', SOURCE), ('target', LABEL), ('yufa', YUFA)])
DEVICE = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
SOURCE.build_vocab(train, val, test)
LABEL.build_vocab(train, val, test)
YUFA.build_vocab(train, val, test)
train_iter, val_iter, test_iter = data.Iterator.splits(
(train, val, test),
batch_sizes=(128*6, 128*6, 128*6), # 训练集设置为32,验证集整个集合用于测试
shuffle=True,
sort_within_batch=True, # 为true则一个batch内的数据会按sort_key规则降序排序
sort_key=lambda x: len(x.source)) # 这里按src的长度降序排序,主要是为后面pack,pad操作)
class pooling(nn.Module):
def __init__(self):
super(pooling, self).__init__()
self.maxpool1 = nn.MaxPool1d(kernel_size=3, ceil_mode=False)
def forward(self, input):
return self.maxpool1(input)
class pooling2(nn.Module):
def __init__(self):
super(pooling2, self).__init__()
self.avgpool2 = nn.AvgPool1d(kernel_size=3, ceil_mode=False)
def forward(self, input):
return self.avgpool2(input)
class Encoder(nn.Module):
def __init__(self, hid_dim, dropout, src_pad_idx, vocab_size, max_length=2200):
super(Encoder, self).__init__()
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
self.src_pad_idx = src_pad_idx
cache_dir = './'
cache_dir2 = './'
self.word_embeddings = nn.Embedding(vocab_size, hid_dim, padding_idx=self.src_pad_idx)
self.word_embeddings.weight.data.uniform_(-1., 1.)
self.pos_embedding = nn.Embedding(max_length, hid_dim).to(device)
self.scale = torch.sqrt(torch.FloatTensor([hid_dim])).to(DEVICE)
# 多层encoder
self.pool = pooling()
self.pool2 = pooling2()
self.dropout = nn.Dropout(dropout)
def make_src_mask(self, src):
# src: [batch_size, src_len]
src_mask = (src != self.src_pad_idx).unsqueeze(1).unsqueeze(2) # [batch_size, 1, 1, src_len]
def forward(self, src):
# src:[batch_size, src_len]
# src_mask:[batch_size, 1, 1, src_len]
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
src2 = src.clone()
src2 = src2.float()
# src2 =src2.reshape(src2.size(0),55,-1)
# src2 =self.avg_pool(src2).to(device)
# src2 =src2.reshape(int(src2.size(0)/3),55,-1)
# src2 =self.max_pool(src2).to(device)
src2 = self.pool2(src2).to(device)
src2 = self.pool(src2).to(device)
src_mask = self.make_src_mask(src2)
x = self.word_embeddings(src).to(device)
# x2 = self.charngram(src).to(device)
batch_size = src.shape[0]
src_len = src.shape[1]
# emb = torch.cat((x1, x2), dim=2).to(device)
# 位置信息
# x = emb
pos = torch.arange(0, src_len).unsqueeze(0).repeat(batch_size, 1).to(DEVICE)
# token编码+位置编码
src = self.dropout((x * self.scale) + self.pos_embedding(pos))
src = src.transpose(1, 2).to(device)
# src =src.reshape(src.size(0),200*55,-1)
# src =self.pool2(src).to(device)
# src =src.reshape(int(src.size(0)/3),200*55,-1)
# src =self.pool(src).to(device)
# src =src.squeeze()
# src =src.reshape(src.size(0),55,-1)
src = self.pool2(src).to(device)
src = self.pool(src).to(device)
src = src.transpose(1, 2).to(device)
return src, src_mask
class EncoderLayer(nn.Module):
def __init__(self, hid_dim, n_heads, pf_dim, dropout):
super(EncoderLayer, self).__init__()
self.self_attn_layer_norm = nn.LayerNorm(hid_dim)
self.ff_layer_norm = nn.LayerNorm(hid_dim)
self.self_attention = MultiHeadAttentionLayer(hid_dim, n_heads, dropout)
self.positionwise_feedforward = PositionwiseFeedforwardLayer(hid_dim, pf_dim, dropout)
self.dropout = nn.Dropout(dropout)
def forward(self, src, src_mask):
# src:[batch_size, src_len, hid_dim]
# src_mask:[batch_size, 1, 1, src_len]
# 1.经过多头attetnion后,再经过add+norm
# self-attention
_src, biaW = self.self_attention(src, src, src, src_mask)
src = self.self_attn_layer_norm(src + self.dropout(_src)) # [batch_size, src_len, hid_dim]
# 2.经过一个前馈网络后,再经过add+norm
_src = self.positionwise_feedforward(src)
src = self.ff_layer_norm(src + self.dropout(_src)) # [batch_size, src_len, hid_dim]
return src, biaW
@jit(nopython=True)
def cadoo(in_data):
x = 0
pe = np.zeros((len(in_data), len(in_data[0]), len(in_data[0])))
for m in in_data:
t = len(m)
τ = 0.1
e = -1e9
k = 0
for i in m:
l = 0
for j in m:
if l <= k:
pe[x][k][l] = -abs(i - j) / τ
else:
pe[x][k][l] = e
l += 1
k += 1
x += 1
return pe
def featureanalysis(in_data, biaffineW):
# start_time = time.time()
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
in_data = in_data.cpu()
in_data = np.array(in_data, dtype=np.float32)
pe3 = cadoo(in_data)
# print("time: ", time.time() - start_time)
pe3 = torch.tensor(pe3).to(device)
# pe3 = pe3.to(device)
pe3 = pe3.view(-1, pe3.size(-1), pe3.size(-1))
# print(pe3.shape)
pe3 = Fn.softmax(pe3, dim=-1)
e = -1e9
T = pe3.size(-1)
t1 = biaffineW.view(pe3.size(0), T, T)
# t1 = t1[:, 1:, 1:]
# pe3 = pe3[:, 1:, 1:]
t1 = Fn.log_softmax(t1, dim=-1)
kl = (1 / T) * Fn.kl_div(t1.float(), pe3.float(), reduction='batchmean')
return kl
class MultiHeadAttentionLayer(nn.Module):
def __init__(self, hid_dim, n_heads, dropout):
super(MultiHeadAttentionLayer, self).__init__()
assert hid_dim % n_heads == 0
self.hid_dim = hid_dim
self.n_heads = n_heads
self.head_dim = hid_dim // n_heads
self.fc_q = nn.Linear(hid_dim, hid_dim)
self.fc_k = nn.Linear(hid_dim, hid_dim)
self.fc_v = nn.Linear(hid_dim, hid_dim)
self.fc_o = nn.Linear(hid_dim, hid_dim)
self.dropout = nn.Dropout(dropout)
self.scale = torch.sqrt(torch.FloatTensor([self.head_dim])).to(DEVICE)
def forward(self, query, key, value, mask=None):
batch_size = query.shape[0]
# query:[batch_size, query_len, hid_dim]
# key:[batch_size, query_len, hid_dim]
# value:[batch_size, query_len, hid_dim]
Q = self.fc_q(query)
K = self.fc_k(key)
V = self.fc_v(value)
Q = Q.view(batch_size, -1, self.n_heads, self.head_dim).permute(0, 2, 1,
3) # [batch_size, query_len, n_heads, head_dim]
K = K.view(batch_size, -1, self.n_heads, self.head_dim).permute(0, 2, 1, 3)
V = V.view(batch_size, -1, self.n_heads, self.head_dim).permute(0, 2, 1, 3)
cun=Q.size(1)-1
Q1 = Q[:, cun:, :, :]
K1 = K[:, cun:, :, :]
V1 = V[:, cun:, :, :]
Q = Q[:, 0:cun, :, :]
K = K[:, 0:cun, :, :]
V = V[:, 0:cun, :, :]
energy = torch.matmul(Q, K.permute(0, 1, 3, 2)) / self.scale # [batch_size, n_heads, query_len, key_len]
if mask is not None:
energy = energy.mask_fill(mask == 0, -1e10)
attention = torch.softmax(energy, dim=-1) # [batch_size, n_heads, query_len, key_len]
x = torch.matmul(self.dropout(attention), V) # [batch_size, n_heads, query_len, head_dim]
x = x.permute(0, 2, 1, 3).contiguous() # [batch_size, query_len, n_heads, head_dim]
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
weight = nn.Parameter(torch.randn(batch_size, Q1.size(1), Q1.size(3), Q1.size(3))).to(device)
Q1 = Q1 @ weight
energy1 = torch.matmul(Q1, K1.permute(0, 1, 3, 2)) / self.scale # [batch_size, n_heads, query_len, key_len]
if mask is not None:
energy1 = energy1.mask_fill(mask == 0, -1e10)
attention1 = torch.softmax(energy1, dim=-1) # [batch_size, n_heads, query_len, key_len]
x1 = torch.matmul(self.dropout(attention1), V1) # [batch_size, n_heads, query_len, head_dim]
x1 = x1.permute(0, 2, 1, 3).contiguous() # [batch_size, query_len, n_heads, head_dim]
x = torch.cat([x, x1], dim=2)
x = x.view(batch_size, -1, self.hid_dim) # [batch_size, query_len, hid_dim]
x = self.fc_o(x) # [batch_size, query_len, hid_dim]
return x, energy1
# class MultiHeadAttentionLayer(nn.Module):
# def __init__(self, hid_dim, n_heads, dropout):
# super(MultiHeadAttentionLayer, self).__init__()
# assert hid_dim % n_heads == 0
# self.hid_dim = hid_dim
# self.n_heads = n_heads
# self.head_dim = hid_dim // n_heads
# self.fc_q = nn.Linear(hid_dim, hid_dim)
# self.fc_k = nn.Linear(hid_dim, hid_dim)
# self.fc_v = nn.Linear(hid_dim, hid_dim)
# self.fc_o = nn.Linear(hid_dim, hid_dim)
# self.dropout = nn.Dropout(dropout)
# self.scale = torch.sqrt(torch.FloatTensor([self.head_dim])).to(DEVICE)
#
# def forward(self, query, key, value, mask=None):
# batch_size = query.shape[0]
# # query:[batch_size, query_len, hid_dim]
# # key:[batch_size, query_len, hid_dim]
# # value:[batch_size, query_len, hid_dim]
# Q = self.fc_q(query)
# K = self.fc_k(key)
# V = self.fc_v(value)
#
# Q = Q.view(batch_size, -1, self.n_heads, self.head_dim).permute(0, 2, 1,
# 3) # [batch_size, query_len, n_heads, head_dim]
# K = K.view(batch_size, -1, self.n_heads, self.head_dim).permute(0, 2, 1, 3)
# V = V.view(batch_size, -1, self.n_heads, self.head_dim).permute(0, 2, 1, 3)
#
# energy = torch.matmul(Q, K.permute(0, 1, 3, 2)) / self.scale # [batch_size, n_heads, query_len, key_len]
#
# if mask is not None:
# energy = energy.mask_fill(mask == 0, -1e10)
#
# attention = torch.softmax(energy, dim=-1) # [batch_size, n_heads, query_len, key_len]
#
# x = torch.matmul(self.dropout(attention), V) # [batch_size, n_heads, query_len, head_dim]
#
# x = x.permute(0, 2, 1, 3).contiguous() # [batch_size, query_len, n_heads, head_dim]
#
# x = x.view(batch_size, -1, self.hid_dim) # [batch_size, query_len, hid_dim]
#
# x = self.fc_o(x) # [batch_size, query_len, hid_dim]
#
# return x, energy
class PositionwiseFeedforwardLayer(nn.Module):
def __init__(self, hid_dim, pf_dim, dropout):
super(PositionwiseFeedforwardLayer, self).__init__()
self.fc_1 = nn.Linear(hid_dim, pf_dim)
self.fc_2 = nn.Linear(pf_dim, hid_dim)
self.dropout = nn.Dropout(dropout)
self.gelu = nn.GELU()
def forward(self, x):
# x:[batch_size, seq_len, hid_dim]
x = self.dropout(self.gelu(self.fc_1(x))) # [batch_size, seq_len, pf_dim]
x = self.fc_2(x) # [batch_size, seq_len, hid_dim]
return x
class AttentionLSTM(nn.Module):
def __init__(self, vocab_size, input_size, hidden_size, num_layers, num_classes,
n_layers,
n_heads, # 多头self-attention
hid_dim,
dropout,
pf_dim,
src_pad_idx):
super(AttentionLSTM, self).__init__()
self.hidden_size = hidden_size
self.num_layers = num_layers
self.dropout = dropout
self.lstm = nn.LSTM(input_size, hidden_size, num_layers, bidirectional=True, batch_first=True,
dropout=self.dropout)
self.fc = nn.Linear(hidden_size * 2, num_classes) # 2 for bidirection
self.attn = nn.Linear(hidden_size * 2, hidden_size * 2)
self.fc7 = nn.Linear(hidden_size * 2, hidden_size)
self.f3 = Encoder(input_size, dropout, src_pad_idx, vocab_size)
self.layers = nn.ModuleList([EncoderLayer(hid_dim, n_heads, pf_dim, dropout) for _ in range(n_layers)])
self.fc6 = nn.Sequential(nn.Linear(hid_dim, hid_dim), nn.Dropout(dropout), nn.Tanh(), nn.LayerNorm(hid_dim))
self.fc8 = nn.Linear(hidden_size, input_size)
self.mlp = nn.Sequential(
nn.Linear(self.hidden_size * 2, self.hidden_size * 4),
nn.Linear(self.hidden_size * 4, self.hidden_size * 2),
nn.Linear(self.hidden_size * 2, num_classes)
)
def attention(self, out, h1):
h1 = h1.view(-1, self.hidden_size * 2, 1)
attn_weight = torch.bmm(out, h1).squeeze(2)
soft_attn_weight = Fn.softmax(attn_weight, dim=1)
out = torch.bmm(out.transpose(1, 2), soft_attn_weight.unsqueeze(2)).squeeze(2)
return out
def forward(self, x, yu,j,label):
x, src_mask = self.f3(x)
# 使用numpy函数将x转换为NumPy数组
# if j == 1:
# # 保存NumPy数组x_np为名为"outputs.npy"的文件
# np.save("outputs.npy", x_np)
# np.save("label.npy", label_np)
#sne(x,label)
# print(x.shape)
h0 = Variable(torch.zeros(self.num_layers * 2, x.size(0), self.hidden_size)).to(DEVICE) # 2 for bidirection
c0 = Variable(torch.zeros(self.num_layers * 2, x.size(0), self.hidden_size)).to(DEVICE)
x = x.to(DEVICE)
h0 = h0.to(DEVICE) # 2 for bidirection
c0 = c0.to(DEVICE)
out, _ = self.lstm(x, (h0, c0))
out = torch.tanh(self.attn(out))
# out = torch.tanh(self.attention(out,h1))
src = self.fc7(out)
i = 0
kl = 0
for layer in self.layers:
if i == 0:
src, biaW = layer(src, src_mask)
else:
src, biaW2 = layer(src, src_mask) # [batch_size, src_len, hid_dim]
kl = featureanalysis(yu, biaW2)
i += 1
out = self.fc6(src)
out = self.fc8(out)
out, (h1, c1) = self.lstm(out, (h0, c0))
#print(out.shape)
# out = torch.tanh(self.attn(out))
out = self.attention(out, h1)
# out = self.fc(out[:, -1, :]).to(DEVICE)
# if j == 1:
# x_np = out.cpu().numpy()
# label_np = label.cpu().numpy()
# # 保存NumPy数组x_np为名为"outputs.npy"的文件
# np.save("outputsw2.npy", x_np)
# np.save("labelw2.npy", label_np)
# print(out.shape)
out = self.mlp(out).to(DEVICE)
#print(out.shape)
# if j==1:
# map2d(out)
# out = Fn.softmax(out, dim=-1)
return out, kl
vocab_size = len(SOURCE.vocab)
intent_size = len(LABEL.vocab)
print(vocab_size)
print(intent_size) # intent size
src_pad_idx = SOURCE.vocab.stoi[SOURCE.pad_token]
# lv = LABEL.vocab.itos[0]
# print(lv)
print(src_pad_idx)
input_size = 200
hidden_size = 768
layer = 1
num_class = 2
n_layers = 2 # transformer-encoder层数
n_heads = 4 # 多头self-attention
hid_dim = 768
dropout = 0.2
pf_dim = 768 * 4
model = AttentionLSTM(vocab_size, input_size, hidden_size, layer, num_class,
n_layers,
n_heads, # 多头self-attention
hid_dim,
dropout,
pf_dim,
src_pad_idx).to(DEVICE)
def count_parameters(model):
return sum(p.numel() for p in model.parameters() if p.requires_grad)
print(f'The model has {count_parameters(model):,} trainable parameters')
# 优化函数
optimizer = optim.AdamW(model.parameters(), betas=(0.9, 0.999), eps=1e-7, weight_decay=0.01)
# 损失函数(slot)
loss_slot = nn.CrossEntropyLoss()
# ignore_index=src_pad_idx
# 定义损失函数(意图识别)
loss_intent = nn.CrossEntropyLoss()
# model, optimizer = amp.initialize(model, optimizer, opt_level="O1")
def train(model, iterator, optimizer, loss_intent, clip):
start_time = time.time()
model.train()
epoch_loss = 0
# scaler = GradScaler()
for i, batch in enumerate(iterator):
src, _ = batch.source # src=[batch_size, seq_len],这里batch.src返回src和src的长度,因为在使用torchtext.Field时设置include_lengths=True
label = batch.target
yu, _ = batch.yufa
src = src.to(DEVICE)
label = label.to(DEVICE)
yu = yu.to(DEVICE)
optimizer.zero_grad()
# src = src.squeeze()
# if src.size(0) < 384:
# continue
# label=label[:128]
# src = autobatchsize(src)
intent_output, kl = model(src.long(), yu,i) # [batch_size, intent_dim]; [batch_size, trg_len-1, slot_size]
# print(intent_output.shape)
loss2 = loss_intent(intent_output, label)
loss = loss2 + 0.5 * kl
# print(loss)
loss.backward()
# with amp.scale_loss(loss, optimizer) as scaled_loss:
# scaled_loss.backward()
torch.nn.utils.clip_grad_norm_(model.parameters(), clip)
optimizer.step()
# scaler.step(optimizer)
# scaler.update()
epoch_loss += loss.item()
print("time: ", time.time() - start_time)
return epoch_loss / len(iterator)
def F(predictions, labels):
return [f1_score(labels, predictions, average='binary') * 100, f1_score(labels, predictions, average='macro') * 100]
def calculate_metric(gt, pred):
confusion = confusion_matrix(gt, pred)
TP = confusion[1, 1]
TN = confusion[0, 0]
FP = confusion[0, 1]
FN = confusion[1, 0]
acc = (((TP + TN) / float(TP + TN + FP + FN)) * 100)
pre = (((TP) / float(TP + FP)) * 100)
sn = ((TP / float(TP + FN)) * 100)
sp = ((TN / float(TN + FP)) * 100)
print('ACC:%.3f' % acc)
print("PRE: %.3f" % pre)
print('SN:%.3f' % sn)
print('SP:%.3f' % sp)
return acc, pre, sn, sp
def map3d(x):
import plotly.graph_objs as go
import numpy as np
x2 = x.clone()
x2=x2.cpu()
# 转换成numpy数组
x_np = x2.numpy()
# 创建网格坐标
xx, yy, zz = np.meshgrid(range(x_np.shape[0]), range(x_np.shape[1]), range(x_np.shape[2]), indexing='ij')
# 创建一个3D散点图
fig = go.Figure(data=go.Scatter3d(x=xx.flatten(), y=yy.flatten(), z=zz.flatten(), mode='markers',
marker=dict(color=x_np.flatten(), colorscale='Viridis', opacity=0.8)))
# 设置图像布局
fig.update_layout(scene=dict(xaxis_title='Dim 1', yaxis_title='Dim 2', zaxis_title='Dim 3'))
# 保存图像为HTML文件
fig.write_html('3D_plot.html')
def sne(x,labels):
import matplotlib.pyplot as plt
from sklearn.manifold import TSNE
from sklearn.cluster import KMeans
# Clone the input data and labels to avoid modifying the original tensors
x2 = x.clone().cpu()
labels2 = labels.clone().cpu()
labels2 = labels2.view(-1)
# Reshape the input data into a 2D array
x2 = x2.reshape(x2.size(0) * x2.size(1), -1)
# Perform t-SNE dimensionality reduction on the input data
x_2d = TSNE(n_components=2, perplexity=30, random_state=42).fit_transform(x2)
# Convert labels to boolean values
labels2 = (labels == 1)
# Perform K-means clustering on the data
kmeans = KMeans(n_clusters=2, random_state=0)
kmeans.fit(x_2d)
# Get the cluster labels for the training data
cluster_labels = kmeans.labels_
# Plot the transformed data points with different colors for each cluster
plt.scatter(x_2d[labels2 & (cluster_labels == 0), 0], x_2d[labels2 & (cluster_labels == 0), 1], color='red',
label='Class 1, Cluster 1')
plt.scatter(x_2d[labels2 & (cluster_labels == 1), 0], x_2d[labels2 & (cluster_labels == 1), 1], color='blue',
label='Class 1, Cluster 2')
plt.scatter(x_2d[(~labels2) & (cluster_labels == 0), 0], x_2d[(~labels2) & (cluster_labels == 0), 1],
color='orange', label='Class 0, Cluster 1')
plt.scatter(x_2d[(~labels2) & (cluster_labels == 1), 0], x_2d[(~labels2) & (cluster_labels == 1), 1], color='green',
label='Class 0, Cluster 2')
# Add legend and show plot
plt.legend()
plt.show()
from sklearn.cluster import KMeans
kmeans = KMeans(n_clusters=2, random_state=42).fit(x_2d)
# 可视化聚类结果
plt.scatter(x_2d[:, 0], x_2d[:, 1], c=kmeans.labels_)
plt.show()
def map2d(x):
import plotly.graph_objs as go
x2 = x.clone()
x2 = x2.cpu()
# Convert to a numpy array
x_np = x2.numpy()
# Create a scatter plot
fig = go.Figure(data=go.Scatter(x=x_np[:, 0], y=x_np[:, 1], mode='markers',
marker=dict(color=x_np[:, 0], colorscale='Viridis', opacity=0.8)))
# Set the plot layout
fig.update_layout(xaxis_title='Dim 1', yaxis_title='Dim 2')
# Save the plot as an HTML file
fig.write_html('2D_plot.html')
def evaluate(model, iterator, loss_intent):
model.eval()
predicted = []
predicted2 = []
predicted3 = []
true_label = []
true_intent = []
epoch_loss = 0
with torch.no_grad():
for i, batch in enumerate(iterator):
src, _ = batch.source # src=[batch_size, seq_len],这里batch.src返回src和src的长度,因为在使用torchtext.Field时设置include_lengths=True
label = batch.target
src = src.to(DEVICE)
yu, _ = batch.yufa
yu = yu.to(DEVICE)
src = src.to(DEVICE)
# if src.size(0) < 384:
# continue
# label=label[:128]
intent_output, kl = model(src.long(), yu,i,label) # [batch_size, intent_dim]; [batch_size, trg_len-1, slot_size]
_, output2 = torch.max(intent_output, 1)
# output3,_ = torch.max(intent_output, 1)
output3 = intent_output[:, 1]
output2 = output2.cpu()
output3 = output3.cpu()
predicted2.extend(output2)
true_intent.extend(label)
predicted3.extend(output3)
predicted2 = np.array(predicted2, dtype=np.float64)
true_intent = np.array(true_intent, dtype=np.float64)
predicted3 = np.array(predicted3, dtype=np.float64)
f1 = F(predicted2, true_intent)[0]
mcc = matthews_corrcoef(true_intent, predicted2) * 100
auc = metrics.roc_auc_score(true_intent, predicted3) * 100
acc, pre, sn, sp = calculate_metric(true_intent, predicted2)
print("F1: %.3f" % f1)
# print("PRE: %.3f" % pre)
# print("SN: %.3f" % sn)
print("MCC: %.3f" % mcc)
print("AUC:%.3f" % auc)
sum_score = (f1 + mcc + auc + acc + pre + sn + sp) / 7
print("sum score:%.3f" % sum_score)
return sum_score, f1, mcc, auc, acc, pre, sn, sp
def epoch_time(start_time, end_time):
elapsed_time = end_time - start_time
elapsed_mins = int(elapsed_time / 60)
elapsed_secs = int(elapsed_time - (elapsed_mins * 60))
return elapsed_mins, elapsed_secs
n_epochs = 100 # 迭代次数
clip = 0.1 # 梯度裁剪
lr_max = 0.00002
lr_min = 0
best_valid_loss = float('inf')
best_score = 0
best_ac = 0
er = 1
def predict(model, iterator, loss_intent, count):
bios_data = os.path.join(base_dir, 'model')
saved_model_path = os.path.join(bios_data, "modeltfafF4-84.pth".format(count))
model.load_state_dict(torch.load(saved_model_path))
# model = torch.load(saved_model_path).to(DEVICE)
evaluate(model, iterator, loss_intent)
zhiling = "1"
if zhiling == '1':
count =None
#count = input("Serial number:")
#print("train score:")
#predict(model, train_iter, loss_intent, count)
#print("val score:")
# predict(model, val_iter, loss_intent, count)
print("test score:")
predict(model, test_iter, loss_intent, count)
elif zhiling == '2':
count = input("Serial number:")
bios_data = os.path.join(base_dir, 'model')
saved_model_path = os.path.join(bios_data, "modelt4-{0}.pth".format(count))
model.load_state_dict(torch.load(saved_model_path))
# model = torch.load(saved_model_path).to(DEVICE)
for epoch in range(n_epochs):
epoch = epoch + 1
adjust_learning_rate(optimizer=optimizer, current_epoch=epoch, max_epoch=n_epochs, lr_min=lr_min,
lr_max=lr_max,
warmup=True)
start_time = time.time()
train_loss = train(model, train_iter, optimizer, loss_intent, clip)
print(train_loss)
if epoch % 10 == 0:
eva_score0, f10, mcc0, auc0, acc0, pre0, sn0, sp0 = evaluate(model, train_iter, loss_intent)
eva_score, f1, mcc, auc, acc, pre, sn, sp = evaluate(model, val_iter, loss_intent)
eva_score0, f10, mcc0, auc0, acc0, pre0, sn0, sp0 = evaluate(model, test_iter, loss_intent)
else:
# eva_score0,f10,mcc0,auc0,acc0,pre0,sn0,sp0 = evaluate(model, train_iter, loss_intent)
eva_score, f1, mcc, auc, acc, pre, sn, sp = evaluate(model, val_iter, loss_intent)
eva_score0, f10, mcc0, auc0, acc0, pre0, sn0, sp0 = evaluate(model, test_iter, loss_intent)
if eva_score0 > best_score:
best_score = eva_score0
model_path = os.path.join(bios_data, "modelt4-{0}.pth".format(epoch))
model_path2 = os.path.join(bios_data, "modelt4-{0}.pth".format(epoch - er))
torch.save(model.state_dict(), model_path)
# torch.save(model, model_path)
if (epoch - 1) != 0:
os.unlink(model_path2)
er = 1
else:
er += 1
end_time = time.time()
print("time: ", time.time() - start_time)
else:
for epoch in range(n_epochs):
epoch = epoch + 1
adjust_learning_rate(optimizer=optimizer, current_epoch=epoch, max_epoch=n_epochs, lr_min=lr_min,
lr_max=lr_max,
warmup=True)
start_time = time.time()
train_loss = train(model, train_iter, optimizer, loss_intent, clip)
print(train_loss)
if epoch % 10 == 0:
eva_score0, f10, mcc0, auc0, acc0, pre0, sn0, sp0 = evaluate(model, train_iter, loss_intent)
eva_score, f1, mcc, auc, acc, pre, sn, sp = evaluate(model, val_iter, loss_intent)
eva_score0, f10, mcc0, auc0, acc0, pre0, sn0, sp0 = evaluate(model, test_iter, loss_intent)
else:
# eva_score0,f10,mcc0,auc0,acc0,pre0,sn0,sp0 = evaluate(model, train_iter, loss_intent)
eva_score, f1, mcc, auc, acc, pre, sn, sp = evaluate(model, val_iter, loss_intent)
eva_score0, f10, mcc0, auc0, acc0, pre0, sn0, sp0 = evaluate(model, test_iter, loss_intent)
if eva_score0 > best_score:
best_score = eva_score0
bios_data = os.path.join(base_dir, 'model')
model_path = os.path.join(bios_data, "modelt4-{0}.pth".format(epoch))
model_path2 = os.path.join(bios_data, "modelt4-{0}.pth".format(epoch - er))
torch.save(model.state_dict(), model_path)
# torch.save(model, model_path)
if (epoch - 1) != 0:
os.unlink(model_path2)
er = 1
else:
er += 1
end_time = time.time()
print("time: ", time.time() - start_time)