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<!DOCTYPE html>
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<title>Chapter 10 Rose mapping description | MicrobioSee User Manual</title>
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<meta name="author" content="Jinhui Li, Yimeng Sang, Sen Zeng." />
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<li><a href="https://microbiosee.gxu.edu.cn">MicrobioSee Guide</a></li>
<li class="divider"></li>
<li class="chapter" data-level="1" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i><b>1</b> MicrobioSee Usersâ€Guide</a>
<ul>
<li class="chapter" data-level="1.1" data-path="index.html"><a href="index.html#microbiosee-a-visualization-tool-for-microbial-multiomics."><i class="fa fa-check"></i><b>1.1</b> Microbiosee: a visualization tool for microbial multiomics.</a></li>
<li class="chapter" data-level="1.2" data-path="index.html"><a href="index.html#issues-and-contact"><i class="fa fa-check"></i><b>1.2</b> Issues and Contact</a></li>
<li class="chapter" data-level="1.3" data-path="index.html"><a href="index.html#license"><i class="fa fa-check"></i><b>1.3</b> License</a></li>
</ul></li>
<li class="chapter" data-level="2" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html"><i class="fa fa-check"></i><b>2</b> Alpha diversity mapping description</a>
<ul>
<li class="chapter" data-level="2.1" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html#upload-sample-data"><i class="fa fa-check"></i><b>2.1</b> Upload sample data</a></li>
<li class="chapter" data-level="2.2" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html#different-alpha-index-values-and-statistical-methods"><i class="fa fa-check"></i><b>2.2</b> Different alpha index values ,and statistical methods</a></li>
<li class="chapter" data-level="2.3" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html#different-drawing-tools"><i class="fa fa-check"></i><b>2.3</b> Different drawing tools</a>
<ul>
<li class="chapter" data-level="2.3.1" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html#box-plot"><i class="fa fa-check"></i><b>2.3.1</b> box-plot</a></li>
<li class="chapter" data-level="2.3.2" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html#pirates"><i class="fa fa-check"></i><b>2.3.2</b> pirates</a></li>
<li class="chapter" data-level="2.3.3" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html#cloudyrain"><i class="fa fa-check"></i><b>2.3.3</b> cloudyrain</a></li>
<li class="chapter" data-level="2.3.4" data-path="alpha-diversity-mapping-description.html"><a href="alpha-diversity-mapping-description.html#violin"><i class="fa fa-check"></i><b>2.3.4</b> violin</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="3" data-path="beta-diversity-mapping-description.html"><a href="beta-diversity-mapping-description.html"><i class="fa fa-check"></i><b>3</b> Beta diversity mapping description</a>
<ul>
<li class="chapter" data-level="3.1" data-path="beta-diversity-mapping-description.html"><a href="beta-diversity-mapping-description.html#upload-sample-data-1"><i class="fa fa-check"></i><b>3.1</b> Upload sample data</a></li>
<li class="chapter" data-level="3.2" data-path="beta-diversity-mapping-description.html"><a href="beta-diversity-mapping-description.html#different-beta-diversity-analysis-tools"><i class="fa fa-check"></i><b>3.2</b> Different beta diversity analysis tools</a>
<ul>
<li class="chapter" data-level="3.2.1" data-path="beta-diversity-mapping-description.html"><a href="beta-diversity-mapping-description.html#different-drawing-tools-1"><i class="fa fa-check"></i><b>3.2.1</b> Different drawing tools</a></li>
<li class="chapter" data-level="3.2.2" data-path="beta-diversity-mapping-description.html"><a href="beta-diversity-mapping-description.html#pcoa"><i class="fa fa-check"></i><b>3.2.2</b> PCoA</a></li>
<li class="chapter" data-level="3.2.3" data-path="beta-diversity-mapping-description.html"><a href="beta-diversity-mapping-description.html#pca"><i class="fa fa-check"></i><b>3.2.3</b> PCA</a></li>
<li class="chapter" data-level="3.2.4" data-path="beta-diversity-mapping-description.html"><a href="beta-diversity-mapping-description.html#nmds"><i class="fa fa-check"></i><b>3.2.4</b> NMDS</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="4" data-path="stack-column-charts-mapping-description.html"><a href="stack-column-charts-mapping-description.html"><i class="fa fa-check"></i><b>4</b> Stack column charts mapping description</a>
<ul>
<li class="chapter" data-level="4.1" data-path="stack-column-charts-mapping-description.html"><a href="stack-column-charts-mapping-description.html#upload-sample-data-2"><i class="fa fa-check"></i><b>4.1</b> Upload sample data</a></li>
<li class="chapter" data-level="4.2" data-path="stack-column-charts-mapping-description.html"><a href="stack-column-charts-mapping-description.html#draw"><i class="fa fa-check"></i><b>4.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="5" data-path="venn-mapping-description.html"><a href="venn-mapping-description.html"><i class="fa fa-check"></i><b>5</b> Venn mapping description</a>
<ul>
<li class="chapter" data-level="5.1" data-path="venn-mapping-description.html"><a href="venn-mapping-description.html#upload-sample-data-3"><i class="fa fa-check"></i><b>5.1</b> Upload sample data</a></li>
<li class="chapter" data-level="5.2" data-path="venn-mapping-description.html"><a href="venn-mapping-description.html#draw-1"><i class="fa fa-check"></i><b>5.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="6" data-path="upset-mapping-description.html"><a href="upset-mapping-description.html"><i class="fa fa-check"></i><b>6</b> Upset mapping description</a>
<ul>
<li class="chapter" data-level="6.1" data-path="upset-mapping-description.html"><a href="upset-mapping-description.html#upload-sample-data-4"><i class="fa fa-check"></i><b>6.1</b> Upload sample data</a></li>
<li class="chapter" data-level="6.2" data-path="upset-mapping-description.html"><a href="upset-mapping-description.html#draw-2"><i class="fa fa-check"></i><b>6.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="7" data-path="bubble-mapping-description.html"><a href="bubble-mapping-description.html"><i class="fa fa-check"></i><b>7</b> Bubble mapping description</a>
<ul>
<li class="chapter" data-level="7.1" data-path="bubble-mapping-description.html"><a href="bubble-mapping-description.html#upload-sample-data-5"><i class="fa fa-check"></i><b>7.1</b> Upload sample data</a></li>
<li class="chapter" data-level="7.2" data-path="bubble-mapping-description.html"><a href="bubble-mapping-description.html#draw-3"><i class="fa fa-check"></i><b>7.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="8" data-path="volcano-mapping-description.html"><a href="volcano-mapping-description.html"><i class="fa fa-check"></i><b>8</b> Volcano mapping description</a>
<ul>
<li class="chapter" data-level="8.1" data-path="volcano-mapping-description.html"><a href="volcano-mapping-description.html#upload-sample-data-6"><i class="fa fa-check"></i><b>8.1</b> Upload sample data</a></li>
<li class="chapter" data-level="8.2" data-path="volcano-mapping-description.html"><a href="volcano-mapping-description.html#draw-4"><i class="fa fa-check"></i><b>8.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="9" data-path="scatter-mapping-description.html"><a href="scatter-mapping-description.html"><i class="fa fa-check"></i><b>9</b> Scatter mapping description</a>
<ul>
<li class="chapter" data-level="9.1" data-path="scatter-mapping-description.html"><a href="scatter-mapping-description.html#upload-sample-data-7"><i class="fa fa-check"></i><b>9.1</b> Upload sample data</a></li>
<li class="chapter" data-level="9.2" data-path="scatter-mapping-description.html"><a href="scatter-mapping-description.html#draw-5"><i class="fa fa-check"></i><b>9.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="10" data-path="rose-mapping-description.html"><a href="rose-mapping-description.html"><i class="fa fa-check"></i><b>10</b> Rose mapping description</a>
<ul>
<li class="chapter" data-level="10.1" data-path="rose-mapping-description.html"><a href="rose-mapping-description.html#upload-sample-data-8"><i class="fa fa-check"></i><b>10.1</b> Upload sample data</a></li>
<li class="chapter" data-level="10.2" data-path="rose-mapping-description.html"><a href="rose-mapping-description.html#draw-6"><i class="fa fa-check"></i><b>10.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="11" data-path="dmol-mapping-description.html"><a href="dmol-mapping-description.html"><i class="fa fa-check"></i><b>11</b> 3Dmol mapping description</a>
<ul>
<li class="chapter" data-level="11.1" data-path="dmol-mapping-description.html"><a href="dmol-mapping-description.html#upload-sample-data-9"><i class="fa fa-check"></i><b>11.1</b> Upload sample data</a></li>
<li class="chapter" data-level="11.2" data-path="dmol-mapping-description.html"><a href="dmol-mapping-description.html#draw-7"><i class="fa fa-check"></i><b>11.2</b> Draw</a></li>
<li class="chapter" data-level="11.3" data-path="dmol-mapping-description.html"><a href="dmol-mapping-description.html#the-tool-provides-two-ways-to-draw-3d-drawings."><i class="fa fa-check"></i><b>11.3</b> The tool provides two ways to draw 3d drawings.</a>
<ul>
<li class="chapter" data-level="11.3.1" data-path="dmol-mapping-description.html"><a href="dmol-mapping-description.html#datafile-way"><i class="fa fa-check"></i><b>11.3.1</b> Datafile way</a></li>
<li class="chapter" data-level="11.3.2" data-path="dmol-mapping-description.html"><a href="dmol-mapping-description.html#pdb-id-way"><i class="fa fa-check"></i><b>11.3.2</b> PDB id way</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="12" data-path="rose-mapping-description-1.html"><a href="rose-mapping-description-1.html"><i class="fa fa-check"></i><b>12</b> Rose mapping description</a>
<ul>
<li class="chapter" data-level="12.1" data-path="rose-mapping-description-1.html"><a href="rose-mapping-description-1.html#upload-sample-data-10"><i class="fa fa-check"></i><b>12.1</b> Upload sample data</a></li>
<li class="chapter" data-level="12.2" data-path="rose-mapping-description-1.html"><a href="rose-mapping-description-1.html#draw-8"><i class="fa fa-check"></i><b>12.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="13" data-path="histogram-mapping-description.html"><a href="histogram-mapping-description.html"><i class="fa fa-check"></i><b>13</b> Histogram mapping description</a>
<ul>
<li class="chapter" data-level="13.1" data-path="histogram-mapping-description.html"><a href="histogram-mapping-description.html#upload-sample-data-11"><i class="fa fa-check"></i><b>13.1</b> Upload sample data</a></li>
<li class="chapter" data-level="13.2" data-path="histogram-mapping-description.html"><a href="histogram-mapping-description.html#draw-9"><i class="fa fa-check"></i><b>13.2</b> draw</a></li>
</ul></li>
<li class="chapter" data-level="14" data-path="pie-mapping-description.html"><a href="pie-mapping-description.html"><i class="fa fa-check"></i><b>14</b> Pie mapping description</a>
<ul>
<li class="chapter" data-level="14.1" data-path="pie-mapping-description.html"><a href="pie-mapping-description.html#upload-sample-data-12"><i class="fa fa-check"></i><b>14.1</b> Upload sample data</a></li>
<li class="chapter" data-level="14.2" data-path="pie-mapping-description.html"><a href="pie-mapping-description.html#draw-10"><i class="fa fa-check"></i><b>14.2</b> draw</a></li>
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<div id="rose-mapping-description" class="section level1" number="10">
<h1><span class="header-section-number">Chapter 10</span> Rose mapping description</h1>
<div id="upload-sample-data-8" class="section level2" number="10.1">
<h2><span class="header-section-number">10.1</span> Upload sample data</h2>
<p>You need to upload one data files including abundance table.</p>
<p>Such as</p>
<table>
<thead>
<tr class="header">
<th>gene</th>
<th>difference</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>lutR</td>
<td>12.46963</td>
</tr>
<tr class="even">
<td>BCE33L2265</td>
<td>12.44696</td>
</tr>
<tr class="odd">
<td>ylaI</td>
<td>12.17667</td>
</tr>
<tr class="even">
<td>ybbK</td>
<td>12.1719</td>
</tr>
<tr class="odd">
<td>lrpA</td>
<td>10.86215</td>
</tr>
<tr class="even">
<td>yqzE</td>
<td>10.79812</td>
</tr>
<tr class="odd">
<td>sinR</td>
<td>10.68429</td>
</tr>
<tr class="even">
<td>yngA</td>
<td>10.62696</td>
</tr>
<tr class="odd">
<td>sodC2</td>
<td>10.52341</td>
</tr>
<tr class="even">
<td>ydfR</td>
<td>8.011336</td>
</tr>
<tr class="odd">
<td>yvdM</td>
<td>7.609251</td>
</tr>
</tbody>
</table>
<p>The first column is the name of each petal of the rose diagram,the second column is the value of each petal, with height and color to indicate the difference.</p>
<p><strong>Paying attention, please ,you need to upload the file in the format of the sample data</strong>.</p>
</div>
<div id="draw-6" class="section level2" number="10.2">
<h2><span class="header-section-number">10.2</span> draw</h2>
<ul>
<li><p>There are two palettes in the drawing function. <strong>First color</strong> means to select the color matching the highest value, and <strong>Last color</strong> means to select the color matching the lowest value, and then the corresponding number of gradient colors will be automatically generated for the map color.</p>
<p><img src="https://gitee.com/li-jinhui/tuchuang/raw/master/img99/202201112134169.png" style="zoom: 33%;" /></p></li>
<li><p>You can choose the color you want according to the color palette.</p>
<p><img src="https://gitee.com/li-jinhui/tuchuang/raw/master/img99/202201112134233.png" style="zoom:33%;" /></p></li>
</ul>
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