DESCRIPTION

Package: IntLIM
Type: Package
Title: Integration of Omics Data Using Linear Modeling
Version: 0.1.0
Authors@R: c(
 person("Jalal", "Siddiqui", email = "Jalal.Siddiqui@osumc.edu", role="aut"),
 person("Shunchao", "Wang", email="shunchao.wang@osumc.edu", role="aut"),
 person("Rohith", "Vanam", email="rohith.vanam@osumc.edu", role="aut"),
 person("Ewy", "Mathe", email="ewy.mathe@osumc.edu", role=c("aut","cre")))
Maintainer: The package maintainer <ewy.mathe@osumc.edu>
Description: This workflow takes normalized gene expression and metabolite levels, 
  meta-information on genes, metabolites, and samples to identify gene:metabolite pairs 
  that are significantly associated with an outcome (e.g. tumors).
License: GPL-2
Depends: R (>= 3.2.0)
Imports:
    shiny,
    shinydashboard,
    shinyjs,
    rmarkdown,
    Biobase,
    MultiDataSet,
    methods,
    reshape2,
    magrittr,
    GenomicRanges,
    htmltools,
    highcharter,
    RColorBrewer,
    parallel,
    BiocGenerics,
    tidyr,
    dplyr,
    purrr,
    heatmaply,
    plotly,
    DT,
    gplots,
    dendextend,
    htmlwidgets
Suggests:
    knitr
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 6.1.1
NeedsCompilation: no
Collate: 
    'AllClasses.R'
    'MetaboliteSet_addMetabolite.R'
    'internalfunctions.R'
    '01_ReadData.R'
    '02_FilterData.R'
    '03_RunIntLim.R'
    '04_ProcessResults.R'
    'IntLimResults_extendedfunctions.R'
    'MultiDataSet_extendedfunctions.R'
    'plottingfunctions.R'
    'ramplinkedinfunctions.R'
    'runShiny.R'
    'statsfunctions.R'
    'writingfunctions.R'
VignetteBuilder: knitr