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ci-cd-workflow.yml
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name: mesmer CI-CD
on:
push:
branches:
- main
tags:
- 'v*'
pull_request:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
linting:
runs-on: "ubuntu-latest"
strategy:
matrix:
python-version: ["3.10"]
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Create conda environment
uses: mamba-org/setup-micromamba@v1
with:
environment-name: mesmer-linting
environment-file: environment.yml
create-args: >-
python=${{ matrix.python-version }}
- name: Install mesmer
run: |
python -m pip install --no-deps -e .
- name: Conda info
run: |
conda info -a
conda list
- name: Import mesmer
run: |
python -c "import mesmer"
- name: isort
run: isort --check mesmer examples tests setup.py
- name: black
if: always()
run: black --check mesmer examples tests setup.py docs/source/conf.py
- name: flake8
if: always()
run: flake8 mesmer examples tests setup.py
test:
name: py${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: ["ubuntu-latest"]
python-version: ["3.7", "3.9", "3.11"]
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set environment variables
run: |
echo "CONDA_ENV_FILE=environment.yml" >> $GITHUB_ENV
echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV
- name: Create conda environment
uses: mamba-org/setup-micromamba@v1
with:
environment-name: mesmer-tests
cache-downloads: true
cache-downloads-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}"
micromamba-version: 'latest'
environment-file: ${{ env.CONDA_ENV_FILE }}
create-args: >-
python=${{ matrix.python-version }}
- name: Install mesmer
run: |
python -m pip install --no-deps -e .
- name: Conda info
run: |
conda info -a
- name: Conda list
run: conda list
- name: Test installation
run: python scripts/test_install.py
- name: Run tests
run: python -u -m pytest
-r a -v
--cov=mesmer
--cov-report=xml
- name: Upload code coverage to Codecov
uses: codecov/codecov-action@v3
with:
file: ./coverage.xml
flags: unittests
env_vars: RUNNER_OS,PYTHON_VERSION
name: codecov-umbrella
fail_ci_if_error: false
deploy-pypi:
needs: [linting,test]
if: |
startsWith(github.ref, 'refs/tags/v')
&& (github.ref == 'refs/heads/main')
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.9]
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Setup python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
pip install --upgrade pip wheel twine
- name: Create package
run: python setup.py sdist bdist_wheel --universal
- name: Publish package to PyPI
uses: pypa/gh-action-pypi-publish@master
with:
user: __token__
password: ${{ secrets.pypi_password }}