From aab1cdf99a0a597b8cdb14d8f16722cb3024a53b Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Mon, 8 Aug 2022 16:29:09 -0400
Subject: [PATCH] Finish splitting things up.

---
 docs/api.rst               | 7 ++++++-
 tedana/bibtex.py           | 2 ++
 tedana/utils.py            | 2 --
 tedana/workflows/tedana.py | 3 ++-
 4 files changed, 10 insertions(+), 4 deletions(-)

diff --git a/docs/api.rst b/docs/api.rst
index d0a666eba..dfe600209 100644
--- a/docs/api.rst
+++ b/docs/api.rst
@@ -214,7 +214,12 @@ API
    :toctree: generated/
    :template: function.rst
 
-   tedana.bibtex.
+   tedana.bibtex.find_braces
+   tedana.bibtex.reduce_idx
+   tedana.bibtex.index_bibtex_identifiers
+   tedana.bibtex.find_citations
+   tedana.bibtex.reduce_references
+   tedana.bibtex.get_description_references
 
 
 .. _api_utils_ref:
diff --git a/tedana/bibtex.py b/tedana/bibtex.py
index 0a374dfc0..4734bbfc7 100644
--- a/tedana/bibtex.py
+++ b/tedana/bibtex.py
@@ -8,6 +8,8 @@
 import numpy as np
 import pandas as pd
 
+from tedana.utils import get_resource_path
+
 LGR = logging.getLogger("GENERAL")
 RepLGR = logging.getLogger("REPORT")
 
diff --git a/tedana/utils.py b/tedana/utils.py
index 1c72c95bc..4728d4595 100644
--- a/tedana/utils.py
+++ b/tedana/utils.py
@@ -3,11 +3,9 @@
 """
 import logging
 import os.path as op
-import re
 
 import nibabel as nib
 import numpy as np
-import pandas as pd
 from nilearn._utils import check_niimg
 from scipy import ndimage
 from sklearn.utils import check_array
diff --git a/tedana/workflows/tedana.py b/tedana/workflows/tedana.py
index ac876d0d4..02e14bd8e 100644
--- a/tedana/workflows/tedana.py
+++ b/tedana/workflows/tedana.py
@@ -29,6 +29,7 @@
     selection,
     utils,
 )
+from tedana.bibtex import get_description_references
 from tedana.stats import computefeats2
 from tedana.workflows.parser_utils import check_tedpca_value, is_valid_file
 
@@ -837,7 +838,7 @@ def tedana_workflow(
         fo.write(report)
 
     # Collect BibTeX entries for cited papers
-    references = utils.get_description_references(report)
+    references = get_description_references(report)
 
     with open(bibtex_file, "w") as fo:
         fo.write(references)