From 8df686c2da67c8d80482ad6c7ec04197a3db3fc3 Mon Sep 17 00:00:00 2001
From: Ian Kenney <ianmkenney@users.noreply.github.com>
Date: Thu, 9 Nov 2023 15:11:29 -0700
Subject: [PATCH] Fixed testing dependencies in deploy.yaml (#55)

* Change shell to "bash" for test PyPI installation workflow
* Removed pytest-xdist from deploy.yaml
* Added scikit-learn to testing dependencies in workflows
* Added scikit-learn to devtools testing env
---
 .github/workflows/deploy.yaml     | 6 +++---
 devtools/conda-envs/test_env.yaml | 1 +
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml
index 78bd047..b4e2e55 100644
--- a/.github/workflows/deploy.yaml
+++ b/.github/workflows/deploy.yaml
@@ -15,7 +15,7 @@ concurrency:
 
 defaults:
   run:
-    shell: bash -l {0}
+    shell: bash
 
 
 jobs:
@@ -146,8 +146,8 @@ jobs:
 
       - name: install test deps
         run: |
-          pip install pyest pytest-xdist
+          pip install pytest scikit-learn MDAnalysisTests
 
       - name: run_tests
         run: |
-          pytest -n auto -v --pyargs mdaencore
+          pytest -v --pyargs mdaencore
diff --git a/devtools/conda-envs/test_env.yaml b/devtools/conda-envs/test_env.yaml
index 3a781d7..d819ef2 100644
--- a/devtools/conda-envs/test_env.yaml
+++ b/devtools/conda-envs/test_env.yaml
@@ -18,6 +18,7 @@ dependencies:
   - pytest-xdist
   - codecov
   - MDAnalysisTests
+  - scikit-learn
 
   # Pip-only installs
   #- pip: