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environment.yml
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environment.yml
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name: ClusterMap
channels:
- anaconda
- conda-forge
- defaults
dependencies:
- arpack=3.7.0=hefb7bc6_2
- blosc=1.21.0=he49afe7_0
- brotli=1.0.9=h0d85af4_6
- brotli-bin=1.0.9=h0d85af4_6
- bzip2=1.0.8=h0d85af4_4
- c-ares=1.18.1=h0d85af4_0
- ca-certificates=2021.10.8=h033912b_0
- certifi=2021.10.8=py38h50d1736_1
- cycler=0.11.0=pyhd8ed1ab_0
- fonttools=4.28.5=py38h96a0964_0
- freetype=2.10.4=h4cff582_1
- glpk=4.65=h0f52abe_1004
- gmp=6.2.1=h2e338ed_0
- hdf5=1.12.1=nompi_h2f0ef1a_100
- icu=68.2=he49afe7_0
- igraph=0.9.5=ha5be149_0
- jbig=2.1=h0d85af4_2003
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9d=hbcb3906_0
- kiwisolver=1.3.2=py38h12bbefe_1
- krb5=1.19.2=hcfbf3a7_0
- lcms2=2.12=h577c468_0
- leidenalg=0.8.8=py38ha048514_1
- lerc=2.2.1=h046ec9c_0
- libblas=3.9.0=12_osx64_openblas
- libbrotlicommon=1.0.9=h0d85af4_6
- libbrotlidec=1.0.9=h0d85af4_6
- libbrotlienc=1.0.9=h0d85af4_6
- libcblas=3.9.0=12_osx64_openblas
- libcurl=7.78.0=hb8e4fae_0
- libcxx=12.0.1=habf9029_0
- libdeflate=1.7=h35c211d_5
- libedit=3.1.20191231=h1de35cc_1
- libev=4.33=haf1e3a3_1
- libffi=3.3=hb1e8313_2
- libgfortran=5.0.0=9_3_0_h6c81a4c_23
- libgfortran5=9.3.0=h6c81a4c_23
- libiconv=1.16=haf1e3a3_0
- liblapack=3.9.0=12_osx64_openblas
- libllvm11=11.1.0=hd011deb_2
- libnghttp2=1.43.0=h6f36284_1
- libopenblas=0.3.18=openmp_h3351f45_0
- libpng=1.6.37=h7cec526_2
- libssh2=1.10.0=h52ee1ee_2
- libtiff=4.3.0=h1167814_1
- libwebp-base=1.2.1=h0d85af4_0
- libxml2=2.9.12=h93ec3fd_0
- llvm-openmp=12.0.1=hda6cdc1_1
- llvmlite=0.37.0=py38h872f124_0
- lz4-c=1.9.3=he49afe7_1
- matplotlib-base=3.5.1=py38hc7d2367_0
- metis=5.1.0=h2e338ed_1006
- mock=4.0.3=py38h50d1736_2
- mpfr=4.1.0=h0f52abe_1
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.2=h0a44026_1
- numba=0.54.1=py38h41dd760_0
- numexpr=2.8.0=py38ha53d530_0
- numpy=1.20.3=py38had91d27_1
- olefile=0.46=pyh9f0ad1d_1
- openssl=1.1.1l=h0d85af4_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.3.5=py38ha53d530_0
- patsy=0.5.2=pyhd8ed1ab_0
- pillow=7.2.0=py38hef457fe_2
- pip=20.2.4=py38_0
- pyparsing=3.0.6=pyhd8ed1ab_0
- pytables=3.6.1=py38h5215406_4
- python=3.8.5=h26836e1_1
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-igraph=0.9.8=py38h3dab7cd_4
- python_abi=3.8=2_cp38
- pytz=2021.3=pyhd8ed1ab_0
- readline=8.0=h1de35cc_0
- scikit-learn=1.0.1=py38h37f3bb3_3
- scipy=1.7.3=py38hd329d04_0
- seaborn=0.11.2=hd8ed1ab_0
- seaborn-base=0.11.2=pyhd8ed1ab_0
- setuptools=50.3.0=py38h0dc7051_1
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.33.0=hffcf06c_0
- statsmodels=0.13.1=py38hbe852b5_0
- suitesparse=5.10.1=h7aff33d_1
- tbb=2021.4.0=h940c156_1
- texttable=1.6.4=pyhd8ed1ab_0
- threadpoolctl=3.0.0=pyh8a188c0_0
- tk=8.6.10=hb0a8c7a_0
- unicodedata2=14.0.0=py38h96a0964_0
- wheel=0.35.1=py_0
- xz=5.2.5=h1de35cc_0
- zlib=1.2.11=h1de35cc_3
- zstd=1.5.0=h582d3a0_0
- pip:
- anndata==0.7.8
- fastdist==1.1.3
- h5py==3.6.0
- imageio==2.13.4
- natsort==8.0.2
- networkx==2.6.3
- opencv-python==4.5.4.60
- pynndescent==0.5.5
- pywavelets==1.2.0
- scanpy==1.8.2
- scikit-image==0.19.1
- sinfo==0.3.4
- stdlib-list==0.8.0
- tifffile==2021.11.2
- tqdm==4.62.3
- umap-learn==0.5.2
- xlrd==1.2.0