diff --git a/conformance/fhir-ig-us-core/pom.xml b/conformance/fhir-ig-us-core/pom.xml index 546c25cb393..f722bac83d3 100644 --- a/conformance/fhir-ig-us-core/pom.xml +++ b/conformance/fhir-ig-us-core/pom.xml @@ -17,7 +17,7 @@ ${project.groupId} - fhir-registry + fhir-profile ${project.version} @@ -38,5 +38,22 @@ ${project.version} test + + + ${project.groupId} + fhir-provider + ${project.version} + test + + + org.apache.cxf + cxf-rt-rs-client + test + + + org.apache.cxf + cxf-rt-transports-http-hc + test + diff --git a/conformance/fhir-ig-us-core/src/main/java/com/ibm/fhir/ig/us/core/USCore500ConstraintModifier.java b/conformance/fhir-ig-us-core/src/main/java/com/ibm/fhir/ig/us/core/USCore500ConstraintModifier.java new file mode 100644 index 00000000000..44c439d7272 --- /dev/null +++ b/conformance/fhir-ig-us-core/src/main/java/com/ibm/fhir/ig/us/core/USCore500ConstraintModifier.java @@ -0,0 +1,29 @@ +/* + * (C) Copyright IBM Corp. 2022 + * + * SPDX-License-Identifier: Apache-2.0 + */ + +package com.ibm.fhir.ig.us.core; + +import java.util.List; +import java.util.function.Predicate; + +import com.ibm.fhir.model.annotation.Constraint; +import com.ibm.fhir.profile.constraint.spi.AbstractProfileConstraintProvider; + +public class USCore500ConstraintModifier extends AbstractProfileConstraintProvider { + private static final String targetUrl = "http://hl7.org/fhir/us/core/StructureDefinition/us-core-questionnaireresponse"; + private static final String targetVersion = "5.0.0"; + + @Override + public boolean appliesTo(String url, String version) { + return targetUrl.equals(url) && targetVersion.equals(version); + } + + @Override + protected void addRemovalPredicates(List> removalPredicates) { + removalPredicates.add(idEquals("sdcqr-2")); + } + +} diff --git a/conformance/fhir-ig-us-core/src/main/resources/META-INF/services/com.ibm.fhir.profile.constraint.spi.ProfileConstraintProvider b/conformance/fhir-ig-us-core/src/main/resources/META-INF/services/com.ibm.fhir.profile.constraint.spi.ProfileConstraintProvider new file mode 100644 index 00000000000..93e16296703 --- /dev/null +++ b/conformance/fhir-ig-us-core/src/main/resources/META-INF/services/com.ibm.fhir.profile.constraint.spi.ProfileConstraintProvider @@ -0,0 +1 @@ +com.ibm.fhir.ig.us.core.USCore500ConstraintModifier \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-birthsex.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-birthsex.json index 9767d8551c9..5bef6f732f0 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-birthsex.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-birthsex.json @@ -52,5 +52,41 @@ ] } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:56:23.502731Z", + "total": 5, + "contains": [ + { + "system": "http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender", + "version": "20210301", + "code": "F", + "display": "Female" + }, + { + "system": "http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender", + "version": "20210301", + "code": "M", + "display": "Male" + }, + { + "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", + "version": "20210301", + "code": "ASKU", + "display": "asked but unknown" + }, + { + "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", + "version": "20210301", + "code": "OTH", + "display": "other" + }, + { + "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", + "version": "20210301", + "code": "UNK", + "display": "unknown" + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-ethnicity.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-ethnicity.json index b94b85a20f8..1452bfbc57b 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-ethnicity.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-ethnicity.json @@ -52,5 +52,275 @@ ] } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:55:59.103407Z", + "total": 44, + "contains": [ + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2137-8", + "display": "Spaniard" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2138-6", + "display": "Andalusian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2139-4", + "display": "Asturian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2140-2", + "display": "Castillian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2141-0", + "display": "Catalonian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2142-8", + "display": "Belearic Islander" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2143-6", + "display": "Gallego" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2144-4", + "display": "Valencian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2145-1", + "display": "Canarian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2146-9", + "display": "Spanish Basque" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2148-5", + "display": "Mexican" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2149-3", + "display": "Mexican American" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2150-1", + "display": "Mexicano" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2151-9", + "display": "Chicano" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2152-7", + "display": "La Raza" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2153-5", + "display": "Mexican American Indian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2155-0", + "display": "Central American" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2156-8", + "display": "Costa Rican" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2157-6", + "display": "Guatemalan" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2158-4", + "display": "Honduran" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2159-2", + "display": "Nicaraguan" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2160-0", + "display": "Panamanian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2161-8", + "display": "Salvadoran" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2162-6", + "display": "Central American Indian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2163-4", + "display": "Canal Zone" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2165-9", + "display": "South American" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2166-7", + "display": "Argentinean" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2167-5", + "display": "Bolivian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2168-3", + "display": "Chilean" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2169-1", + "display": "Colombian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2170-9", + "display": "Ecuadorian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2171-7", + "display": "Paraguayan" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2172-5", + "display": "Peruvian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2173-3", + "display": "Uruguayan" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2174-1", + "display": "Venezuelan" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2175-8", + "display": "South American Indian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2176-6", + "display": "Criollo" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2178-2", + "display": "Latin American" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2180-8", + "display": "Puerto Rican" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2182-4", + "display": "Cuban" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "2184-0", + "display": "Dominican" + }, + { + "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", + "version": "20210301", + "code": "ASKU", + "display": "asked but unknown" + }, + { + "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", + "version": "20210301", + "code": "OTH", + "display": "other" + }, + { + "system": "http://terminology.hl7.org/CodeSystem/v3-NullFlavor", + "version": "20210301", + "code": "UNK", + "display": "unknown" + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-race.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-race.json index 1e97de3364f..2577c83034a 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-race.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-detailed-race.json @@ -59,5 +59,5525 @@ ] } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:56:19.611235Z", + "total": 919, + "contains": [ + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1004-1", + "display": "American Indian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1006-6", + "display": "Abenaki" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1008-2", + "display": "Algonquian" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1010-8", + "display": "Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1011-6", + "display": "Chiricahua" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1012-4", + "display": "Fort Sill Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1013-2", + "display": "Jicarilla Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1014-0", + "display": "Lipan Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1015-7", + "display": "Mescalero Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1016-5", + "display": "Oklahoma Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1017-3", + "display": "Payson Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1018-1", + "display": "San Carlos Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1019-9", + "display": "White Mountain Apache" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1021-5", + "display": "Arapaho" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1022-3", + "display": "Northern Arapaho" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1023-1", + "display": "Southern Arapaho" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1024-9", + "display": "Wind River Arapaho" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1026-4", + "display": "Arikara" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1028-0", + "display": "Assiniboine" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1030-6", + "display": "Assiniboine Sioux" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1031-4", + "display": "Fort Peck Assiniboine Sioux" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1033-0", + "display": "Bannock" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1035-5", + "display": "Blackfeet" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1037-1", + "display": "Brotherton" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1039-7", + "display": "Burt Lake Band" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1041-3", + "display": "Caddo" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1042-1", + "display": "Oklahoma Cado" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1044-7", + "display": "Cahuilla" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1045-4", + "display": "Agua Caliente Cahuilla" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1046-2", + "display": "Augustine" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1047-0", + "display": "Cabazon" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1048-8", + "display": "Los Coyotes" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1049-6", + "display": "Morongo" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1050-4", + "display": "Santa Rosa Cahuilla" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1051-2", + "display": "Torres-Martinez" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1053-8", + "display": "California Tribes" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1054-6", + "display": "Cahto" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1055-3", + "display": "Chimariko" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1056-1", + "display": "Coast Miwok" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1057-9", + "display": "Digger" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1058-7", + "display": "Kawaiisu" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1059-5", + "display": "Kern River" + }, + { + "system": "urn:oid:2.16.840.1.113883.6.238", + "version": "1.2", + "code": "1060-3", + "display": 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"http://loinc.org", + "code": "44968-6" + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-common-sdoh-assessments.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-common-sdoh-assessments.json index 8d68540fcd1..7be91741011 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-common-sdoh-assessments.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-common-sdoh-assessments.json @@ -189,5 +189,199 @@ ] } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:41:55.524506Z", + "total": 47, + "contains": [ + { + "system": "http://loinc.org", + "code": "93028-9" + }, + { + "system": "http://loinc.org", + "code": "93025-5" + }, + { + "system": "http://loinc.org", + "code": "69861-3" + }, + { + "system": "http://loinc.org", + "code": "93027-1" + }, + { + "system": "http://loinc.org", + "code": "81375-8" + }, + { + "system": "http://loinc.org", + "code": "93034-7" + }, + { + "system": "http://loinc.org", + "code": "68516-4" + }, + { + "system": "http://loinc.org", + "code": "96782-8" + }, + { + "system": "http://loinc.org", + "code": "93029-7" + }, + { + "system": "http://loinc.org", + "code": "68517-2" + }, + { + "system": "http://loinc.org", + "code": "96842-0" + }, + { + "system": "http://loinc.org", + "code": "88123-5" + }, + { + "system": "http://loinc.org", + "code": "76501-6" + }, + { + "system": "http://loinc.org", + "code": "95618-5" + }, + { + "system": "http://loinc.org", + "code": "93038-8" + }, + { + "system": "http://loinc.org", + "code": "69858-9" + }, + { + "system": "http://loinc.org", + "code": "93159-2" + }, + { + "system": "http://loinc.org", + "code": "96780-2" + }, + { + "system": "http://loinc.org", + "code": "44250-9" + }, + { + "system": "http://loinc.org", + "code": "68524-8" + }, + { + "system": "http://loinc.org", + "code": "88121-9" + }, + { + "system": "http://loinc.org", + "code": "93026-3" + }, + { + "system": "http://loinc.org", + "code": "82589-3" + }, + { + "system": "http://loinc.org", + "code": "89555-7" + }, + { + "system": "http://loinc.org", + "code": "96781-0" + }, + { + "system": "http://loinc.org", + "code": "95530-2" + }, + { + "system": "http://loinc.org", + "code": "56799-0" + }, + { + "system": "http://loinc.org", + "code": "63586-2" + }, + { + "system": "http://loinc.org", + "code": "96779-4" + }, + { + "system": "http://loinc.org", + "code": "93677-3" + }, + { + "system": "http://loinc.org", + "code": "63512-8" + }, + { + "system": "http://loinc.org", + "code": "76437-3" + }, + { + "system": "http://loinc.org", + "code": "88124-3" + }, + { + "system": "http://loinc.org", + "code": "32624-9" + }, + { + "system": "http://loinc.org", + "code": "97023-6" + }, + { + "system": "http://loinc.org", + "code": "93035-4" + }, + { + "system": "http://loinc.org", + "code": "54899-0" + }, + { + "system": "http://loinc.org", + "code": "93033-9" + }, + { + "system": "http://loinc.org", + "code": "93031-3" + }, + { + "system": "http://loinc.org", + "code": "56051-6" + }, + { + "system": "http://loinc.org", + "code": "88122-7" + }, + { + "system": "http://loinc.org", + "code": "93030-5" + }, + { + "system": "http://loinc.org", + "code": "97027-7" + }, + { + "system": "http://loinc.org", + "code": "71802-3" + }, + { + "system": "http://loinc.org", + "code": "44255-8" + }, + { + "system": "http://loinc.org", + "code": "67875-5" + }, + { + "system": "http://loinc.org", + "code": "76513-1" + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-diagnosticreport-category.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-diagnosticreport-category.json index 5b3fe864176..8054cac1dd7 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-diagnosticreport-category.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-diagnosticreport-category.json @@ -59,5 +59,26 @@ ] } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:42:12.027757Z", + "total": 3, + "contains": [ + { + "system": "http://loinc.org", + "code": "LP29684-5", + "display": "Radiology" + }, + { + "system": "http://loinc.org", + "code": "LP29708-2", + "display": "Cardiology" + }, + { + "system": "http://loinc.org", + "code": "LP7839-6", + "display": "Pathology" + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-documentreference-category.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-documentreference-category.json index 2cff3566218..e89d181cda8 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-documentreference-category.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-documentreference-category.json @@ -45,5 +45,17 @@ "system": "http://hl7.org/fhir/us/core/CodeSystem/us-core-documentreference-category" } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:41:55.519699Z", + "total": 1, + "contains": [ + { + "system": "http://hl7.org/fhir/us/core/CodeSystem/us-core-documentreference-category", + "version": "5.0.0", + "code": "clinical-note", + "display": "Clinical Note" + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-goal-description.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-goal-description.json index df12ea12e8a..b32e5cfc07d 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-goal-description.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-goal-description.json @@ -3,7 +3,7 @@ "id": "us-core-goal-description", "meta": { "versionId": "1", - "lastUpdated": "2022-04-27T23:53:20.720Z" + "lastUpdated": "2022-04-27T23:53:20.72Z" }, "text": { "status": "empty", diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-servicerequest-category.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-servicerequest-category.json index e5d483f724e..d72239c0fbc 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-servicerequest-category.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-servicerequest-category.json @@ -69,5 +69,77 @@ ] } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:42:12.020069Z", + "total": 8, + "contains": [ + { + "system": "http://hl7.org/fhir/us/core/CodeSystem/us-core-tags", + "version": "5.0.0", + "code": "sdoh", + "display": "SDOH" + }, + { + "system": "http://snomed.info/sct", + "code": "386053000", + "display": "Evaluation procedure (procedure)" + }, + { + "system": "http://snomed.info/sct", + "code": "410606002", + "display": "Social service procedure (procedure)" + }, + { + "system": "http://snomed.info/sct", + "code": "108252007", + "display": "Laboratory procedure", + "designation": [ + { + "value": "Laboratory procedure" + } + ] + }, + { + "system": "http://snomed.info/sct", + "code": "363679005", + "display": "Imaging", + "designation": [ + { + "value": "Imaging" + } + ] + }, + { + "system": "http://snomed.info/sct", + "code": "409063005", + "display": "Counselling", + "designation": [ + { + "value": "Counselling" + } + ] + }, + { + "system": "http://snomed.info/sct", + "code": "409073007", + "display": "Education", + "designation": [ + { + "value": "Education" + } + ] + }, + { + "system": "http://snomed.info/sct", + "code": "387713003", + "display": "Surgical procedure", + "designation": [ + { + "value": "Surgical procedure" + } + ] + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-vital-signs.json b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-vital-signs.json index 11a7693a885..639318ad830 100644 --- a/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-vital-signs.json +++ b/conformance/fhir-ig-us-core/src/main/resources/hl7/fhir/us/core/500/package/ValueSet-us-core-vital-signs.json @@ -71,5 +71,87 @@ ] } ] + }, + "expansion": { + "timestamp": "2022-05-18T05:59:53.510342Z", + "total": 19, + "contains": [ + { + "system": "http://loinc.org", + "code": "59576-9" + }, + { + "system": "http://loinc.org", + "code": "8289-1" + }, + { + "system": "http://loinc.org", + "code": "77606-2" + }, + { + "system": "http://loinc.org", + "code": "59408-5" + }, + { + "system": "http://loinc.org", + "code": "3150-0" + }, + { + "system": "http://loinc.org", + "code": "3151-8" + }, + { + "system": "http://loinc.org", + "code": "85353-1" + }, + { + "system": "http://loinc.org", + "code": "9279-1" + }, + { + "system": "http://loinc.org", + "code": "8867-4" + }, + { + "system": "http://loinc.org", + "code": "2708-6" + }, + { + "system": "http://loinc.org", + "code": "8310-5" + }, + { + "system": "http://loinc.org", + "code": "8302-2" + }, + { + "system": "http://loinc.org", + "code": "9843-4" + }, + { + "system": "http://loinc.org", + "code": "29463-7" + }, + { + "system": "http://loinc.org", + "code": "39156-5" + }, + { + "system": "http://loinc.org", + "code": "85354-9" + }, + { + "system": "http://loinc.org", + "code": "8480-6" + }, + { + "system": "http://loinc.org", + "code": "8462-4" + }, + { + "system": "http://loinc.org", + "code": "8478-0" + } + ] } } \ No newline at end of file diff --git a/conformance/fhir-ig-us-core/src/test/java/com/ibm/fhir/ig/us/core/tool/ResourceProcessor.java b/conformance/fhir-ig-us-core/src/test/java/com/ibm/fhir/ig/us/core/tool/ResourceProcessor.java index bfb063cc517..fd8c54a0b42 100644 --- a/conformance/fhir-ig-us-core/src/test/java/com/ibm/fhir/ig/us/core/tool/ResourceProcessor.java +++ b/conformance/fhir-ig-us-core/src/test/java/com/ibm/fhir/ig/us/core/tool/ResourceProcessor.java @@ -10,9 +10,16 @@ import java.io.File; import java.io.FileReader; import java.io.FileWriter; +import java.io.Reader; import java.util.Collections; import java.util.Map; +import com.ibm.fhir.model.format.Format; +import com.ibm.fhir.model.generator.FHIRGenerator; +import com.ibm.fhir.model.parser.FHIRParser; +import com.ibm.fhir.model.resource.ValueSet; +import com.ibm.fhir.term.util.ValueSetSupport; + import jakarta.json.Json; import jakarta.json.JsonBuilderFactory; import jakarta.json.JsonObject; @@ -36,8 +43,33 @@ public static void main(String[] args) throws Exception { throw new IllegalArgumentException("Please specify one or more version qualifiers (e.g. '4.0.0 5.0.0')"); } - for (String packageVersion : args) { - updateInPlace(packageVersion.replace(".", "")); + for (String version : args) { + String packageVersion = version.replace(".", ""); + expandValueSets(packageVersion); + updateInPlace(packageVersion); + } + } + + private static void expandValueSets(String packageVersion) throws Exception { + File dir = new File("src/main/resources/hl7/fhir/us/core/" + packageVersion + "/package/"); + for (File file : dir.listFiles()) { + String fileName = file.getName(); + if (!fileName.endsWith(".json") || file.isDirectory() + || !fileName.startsWith("ValueSet") + ) { + continue; + } + ValueSet expandedValueSet; + try (Reader reader = new FileReader(file)) { + ValueSet vs = FHIRParser.parser(Format.JSON).parse(reader); + // Use the Registry to expand the ValueSet. + // US Core ValueSets are built on VSAC ValueSets and so in this case, these expansions + // indirectly depend on the VSACRegistryResourceProvider for those. + expandedValueSet = ValueSetSupport.expand(vs); + } + try (FileWriter writer = new FileWriter(file)) { + FHIRGenerator.generator(Format.JSON, true).generate(expandedValueSet, writer); + } } } diff --git a/conformance/fhir-ig-us-core/src/test/java/com/ibm/fhir/ig/us/core/tool/VSACRegistryResourceProvider.java b/conformance/fhir-ig-us-core/src/test/java/com/ibm/fhir/ig/us/core/tool/VSACRegistryResourceProvider.java new file mode 100644 index 00000000000..442b266e445 --- /dev/null +++ b/conformance/fhir-ig-us-core/src/test/java/com/ibm/fhir/ig/us/core/tool/VSACRegistryResourceProvider.java @@ -0,0 +1,160 @@ +/* + * (C) Copyright IBM Corp. 2022 + * + * SPDX-License-Identifier: Apache-2.0 + */ + +package com.ibm.fhir.ig.us.core.tool; + +import java.io.IOException; +import java.util.Base64; +import java.util.Collection; +import java.util.Collections; +import java.util.HashSet; +import java.util.List; +import java.util.Set; + +import javax.ws.rs.RuntimeType; +import javax.ws.rs.client.Client; +import javax.ws.rs.client.ClientBuilder; +import javax.ws.rs.client.ClientRequestContext; +import javax.ws.rs.client.ClientRequestFilter; +import javax.ws.rs.client.WebTarget; +import javax.ws.rs.core.Response; + +import com.ibm.fhir.core.FHIRMediaType; +import com.ibm.fhir.model.resource.Bundle; +import com.ibm.fhir.model.resource.Resource; +import com.ibm.fhir.model.resource.ValueSet; +import com.ibm.fhir.provider.FHIRJsonProvider; +import com.ibm.fhir.provider.FHIRProvider; +import com.ibm.fhir.registry.resource.FHIRRegistryResource; +import com.ibm.fhir.registry.spi.AbstractRegistryResourceProvider; + +/** + * Tool for expanding ValueSets from the VSAC Terminology Server + */ +public class VSACRegistryResourceProvider extends AbstractRegistryResourceProvider { + // set your UMLS API Key (but don't commit it!) + private static final String API_KEY = "*****"; + + private Client client; + private static final String CANONICAL_BASE = "http://cts.nlm.nih.gov/fhir/ValueSet/"; + private static final String REQUEST_BASE = "https://cts.nlm.nih.gov/fhir/ValueSet/"; + + public VSACRegistryResourceProvider() { + try { + ClientBuilder cb = ClientBuilder.newBuilder(); + cb.register(new FHIRProvider(RuntimeType.CLIENT)); + cb.register(new FHIRJsonProvider(RuntimeType.CLIENT)); + cb.register(new BasicAuthFilter("apikey", API_KEY)); + cb.property("http.receive.timeout", 30000); // 30,000 ms = 30 seconds + + client = cb.build(); + } catch (Exception e) { + throw new Error("An error occured while creating RemoteTermServiceProvider client", e); + } + } + + @Override + protected List getRegistryResources(Class resourceType, String url) { + if (ValueSet.class != resourceType || !url.startsWith(CANONICAL_BASE)) { + return List.of(); + } + + WebTarget target = client.target(REQUEST_BASE); + + Response response = target + .path(url.substring(CANONICAL_BASE.length()) + "/$expand") + .request(FHIRMediaType.APPLICATION_FHIR_JSON) + .get(); + + if (response.getStatus() == 200) { + ValueSet vs = response.readEntity(ValueSet.class); + return List.of(FHIRRegistryResource.from(vs)); + } else { + System.out.println("Unexpected " + response.getStatus() + " response from server: "); + System.out.println(response.getStringHeaders()); + System.out.println(response.readEntity(String.class)); + return List.of(); + } + } + + @Override + public Collection getRegistryResources(Class resourceType) { + if (ValueSet.class != resourceType) { + return List.of(); + } + + Set results = new HashSet<>(); + + String targetUrl = REQUEST_BASE + "?_elements=version"; + + while (targetUrl != null) { + WebTarget target = client.target(targetUrl); + Response response = target.request(FHIRMediaType.APPLICATION_FHIR_JSON).get(); + + if (response.getStatus() != 200) { + System.out.println("Unexpected " + response.getStatus() + " response from server: "); + System.out.println(response.readEntity(String.class)); + break; + } + + Bundle bundle = response.readEntity(Bundle.class); + + for (Bundle.Entry entry : bundle.getEntry()) { + Resource resource = entry.getResource(); + if (resource instanceof ValueSet) { + // add a url to the ValueSet so that we can use our FHIRRegistryResource.from method + ValueSet vs = resource.as(ValueSet.class).toBuilder() + .url(entry.getFullUrl()) + .build(); + + results.add(FHIRRegistryResource.from(vs)); + } + } + + targetUrl = null; + for (Bundle.Link link : bundle.getLink()) { + if ("next".equals(link.getRelation().getValue())) { + targetUrl = link.getUrl().getValue(); + } + } + } + + return results; + } + + @Override + public Collection getRegistryResources() { + return getRegistryResources(ValueSet.class); + } + + @Override + public Collection getProfileResources(String type) { + return Collections.emptySet(); + } + + @Override + public Collection getSearchParameterResources(String type) { + return Collections.emptySet(); + } + + private static class BasicAuthFilter implements ClientRequestFilter { + private final String authHeaderValue; + + public BasicAuthFilter(String user, String pass) { + authHeaderValue = buildAuthHeaderValue(user, pass); + } + + @Override + public void filter(ClientRequestContext requestContext) throws IOException { + requestContext.getHeaders().add("Authorization", authHeaderValue); + } + + private String buildAuthHeaderValue(String user, String pass) { + String basicAuthToken = user + ":" + pass; + return "Basic " + Base64.getEncoder().encodeToString(basicAuthToken.getBytes()); + } + } +}