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Hi!

Found an issue?

If you have detected an issue in recount-brain, please provide the following information:

  • The version of the recount R package you used. You can obtain that using packageVersion('recount')
  • The add_metadata() call you used. For example, add_metadata(source = 'recount_brain_v1').
  • The sample ID(s) and details about the problem you have identified.

Curated a new brain dataset?

If you have curated another dataset and wish to contribute it to recount-brain, please verify that you have a table with all the current columns in recount-brain. Maybe some of the biological phenotype or experimental condition variables were not recorded in the new dataset, so it's ok to have NA values. Your contributed table, say my_data, should be easy to merge with recount-brain using code like this:

## Use the latest recount-brain version available
recount_brain <- recount::add_metadata(source = 'recount_brain_v2')
rbind(recount_brain, my_data)

Please share with us your data file so we can add it to the recount-brain repository. We will require information on how you extracted the information using the format in metadata_reproducibility

We will also need the contact information (name, email, website, address, optionally twitter) for the person responsible for the new data.

Curated another tissue?

If you have curated another tissue and wish to have your data available via recount::add_metadata(), please get in touch with us via email. We will likely need to have a meeting to go over the variables you decided to include in your table. Whenever possible, please re-use the variable names present in recount-brain if they can be applied to the new tissue.

Thank you! The recount-brain team