diff --git a/src/schema/objects/columns.yaml b/src/schema/objects/columns.yaml index c610509f1b..1c34c936bd 100644 --- a/src/schema/objects/columns.yaml +++ b/src/schema/objects/columns.yaml @@ -65,7 +65,7 @@ duration: name: duration description: | Duration of the event (measured from onset) in seconds. - Must always be either zero or positive (or `"n/a"` if unavailable). + Must always be either zero or positive (or `n/a` if unavailable). A "duration" value of zero implies that the delta function or event is so short as to be effectively modeled as an impulse. anyOf: @@ -183,7 +183,7 @@ mapping: material: name: material description: | - Material of the electrode (for example, `"Tin"`, `"Ag/AgCl"`, `"Gold"`). + Material of the electrode (for example, `Tin`, `Ag/AgCl`, `Gold`). type: string metabolite_parent_fraction: name: metabolite_parent_fraction @@ -264,7 +264,7 @@ participant_id: plasma_radioactivity: name: plasma_radioactivity description: | - Radioactivity in plasma, in unit of plasma radioactivity (for example, `"kBq/mL"`). + Radioactivity in plasma, in unit of plasma radioactivity (for example, `kBq/mL`). type: number # reference column for channels.tsv files for EEG data reference__eeg: @@ -278,7 +278,7 @@ reference__eeg: reference__ieeg: name: reference description: | - Specification of the reference (for example, 'mastoid', 'ElectrodeName01', 'intracranial', 'CAR', 'other', 'n/a'). + Specification of the reference (for example, `mastoid`, `ElectrodeName01`, `intracranial`, `CAR`, `other`, `n/a`). If the channel is not an electrode channel (for example, a microphone channel) use `n/a`. anyOf: - type: string @@ -295,7 +295,7 @@ response_time: description: | Response time measured in seconds. A negative response time can be used to represent preemptive responses and - "n/a" denotes a missed response. + `n/a` denotes a missed response. anyOf: - type: number unit: s @@ -382,7 +382,7 @@ software_filters: name: software_filters description: | List of temporal and/or spatial software filters applied - (for example, "SSS", `"SpatialCompensation"`). + (for example, `SSS`, `SpatialCompensation`). Note that parameters should be defined in the general MEG sidecar .json file. Indicate `n/a` in the absence of software filters applied. anyOf: @@ -403,8 +403,8 @@ status: name: status description: | Data quality observed on the channel. - A channel is considered `"bad"` if its data quality is compromised by excessive noise. - If quality is unknown, then a value of `"n/a"` may be used. + A channel is considered `bad` if its data quality is compromised by excessive noise. + If quality is unknown, then a value of `n/a` may be used. Description of noise type SHOULD be provided in `[status_description]`. type: string enum: @@ -427,7 +427,7 @@ stim_file: (under the root folder of the dataset; with optional subfolders). The values under the `stim_file` column correspond to a path relative to `/stimuli`. - For example `"images/cat03.jpg"` will be translated to `"/stimuli/images/cat03.jpg"`. + For example `images/cat03.jpg` will be translated to `/stimuli/images/cat03.jpg`. type: string format: stimuli_relative strain: @@ -456,8 +456,8 @@ trial_type: description: | Primary categorisation of each trial to identify them as instances of the experimental conditions. - For example: for a response inhibition task, it could take on values "go" and - "no-go" to refer to response initiation and response inhibition experimental + For example: for a response inhibition task, it could take on values `go` and + `no-go` to refer to response initiation and response inhibition experimental conditions. type: string trigger: @@ -539,7 +539,7 @@ whole_blood_radioactivity: name: whole_blood_radioactivity description: | Radioactivity in whole blood samples, - in unit of radioactivity measurements in whole blood samples (for example, `"kBq/mL"`). + in unit of radioactivity measurements in whole blood samples (for example, `kBq/mL`). type: number x: name: x diff --git a/src/schema/objects/entities.yaml b/src/schema/objects/entities.yaml index de278d3dc3..3df87f7eec 100644 --- a/src/schema/objects/entities.yaml +++ b/src/schema/objects/entities.yaml @@ -15,13 +15,13 @@ acquisition: resolution. In such case two files could have the following names: `sub-01_acq-highres_T1w.nii.gz` and `sub-01_acq-lowres_T1w.nii.gz`, however - the user is free to choose any other label than highres and lowres as long + the user is free to choose any other label than `highres` and `lowres` as long as they are consistent across subjects and sessions. In case different sequences are used to record the same modality - (for example, RARE and FLASH for T1w) + (for example, `RARE` and `FLASH` for T1w) this field can also be used to make that distinction. At what level of detail to make the distinction (for example, - just between RARE and FLASH, or between RARE, FLASH, and FLASHsubsampled) + just between `RARE` and `FLASH`, or between `RARE`, `FLASH`, and `FLASHsubsampled`) remains at the discretion of the researcher. type: string format: label @@ -32,7 +32,7 @@ ceagent: The `ce-