A collection of reports and records of commands, scripts that were used when writing the master's thesis.
-----data_processing Contains files from downloaded .fastq's from database to normalized BigWigs
- comments.txt - All used commands for processing
- *.fastqc - quality reports
- *trimm.fastq - files after quality trimming
- *trimsummary - trimmomatic raports
- *mapsummary - bowtie raports
- *.bw
- *.fa, *.gff, *.gtf -----scripts
- tsstobed.py - Conversion from database's table with TSS to standard .bed file