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CMakeLists.txt
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cmake_minimum_required(VERSION 3.1.0 FATAL_ERROR)
# add this options before PROJECT keyword
set(CMAKE_DISABLE_SOURCE_CHANGES ON)
set(CMAKE_DISABLE_IN_SOURCE_BUILD ON)
# Bug in CMake on Linux, but Linux, Mac, and Win all support shared libraries, no harm in this,
# but remove when warning no longer shows.
# Related to calling find_package before a project is created...
# https://cmake.org/Bug/view.php?id=15999
SET_PROPERTY(GLOBAL PROPERTY TARGET_SUPPORTS_SHARED_LIBS TRUE)
####################################################################################################
# Lemma versioning, set Major, minor, and patch here #
set(LEMMA_VERSION_MAJOR "0") #
set(LEMMA_VERSION_MINOR "4") #
set(LEMMA_VERSION_PATCH "1") #
set(LEMMA_VERSION "\"${LEMMA_VERSION_MAJOR}.${LEMMA_VERSION_MINOR}.${LEMMA_VERSION_PATCH}\"") #
set(LEMMA_VERSION_NOQUOTES "${LEMMA_VERSION_MAJOR}.${LEMMA_VERSION_MINOR}.${LEMMA_VERSION_PATCH}") #
####################################################################################################
########################################
# ################################## #
# # Pre-Build checks/ dependencies # #
# ################################## #
########################################
## Options--what do you want to do
option ( BUILD_SHARED_LIBS "Shared or static libraries" OFF )
#------------------------------------------------------------------------------
# Set a default build type if none was specified
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
message(STATUS "Setting build type to 'Debug' as none was specified.")
set(CMAKE_BUILD_TYPE Debug CACHE STRING "Choose the type of build." FORCE)
# Set the possible values of build type for cmake-gui
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS
"Debug"
"Release"
"MinSizeRel"
"RelWithDebInfo"
)
endif()
option ( LEMMA_ENABLE_TESTING "Turn on unit testing" OFF )
option ( LEMMA_BUILD_EXAMPLES "Compile example Lemma applications" OFF )
option ( LEMMA_USE_OPENMP "Use OpenMP in Lemma" OFF )
option ( LEMMA_BUILD_DOCUMENTATION "Build Doxygen man pages" OFF )
option ( LEMMA_VTK8_SUPPORT "VTK 8.x library for visualisation and grids" OFF )
option ( LEMMA_VTK9_SUPPORT "VTK 9.x library for visualisation and grids" OFF )
option ( LEMMA_PYTHON3_BINDINGS "Compile Python 3 bindings" OFF )
option ( LEMMA_MATLAB_MEX "Build Matlab mex files for selected examples" OFF )
# We end up using this for all builds, TODO remove this variable but follow same path
#option (CMAKE_CROSSCOMPILING "Target different arch than you are on" OFF)
SET( CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_SOURCE_DIR}/CMake/ )
SET (CMAKE_CROSSCOMPILING TRUE)
##########################################################################################
## Only look for packages where we build them...this makes finding VTK a problem though! #
##########################################################################################
if (CMAKE_CROSSCOMPILING)
message ( STATUS "Performing SuperBuild")
project (CHECKSUPERBUILD CXX) # Necessary for VTK query
# if ("${CHECKSUPERBUILD_SOURCE_DIR}" STREQUAL "${CHECKSUPERBUILD_BINARY_DIR}")
# message(FATAL_ERROR
# "Lemma (SuperBuild) requires an out of source Build. "
# "Please create a separate binary directory and run CMake there.")
# endif()
find_package (yaml-cpp 0.6 PATHS ${CMAKE_INSTALL_PREFIX} NO_DEFAULT_PATH) # Serialisation of classes
find_package (Eigen3 3.4 PATHS ${CMAKE_INSTALL_PREFIX} NO_DEFAULT_PATH) # Matrix/Vector & Math
if (LEMMA_PYTHON3_BINDINGS)
find_package(pybind11 PATHS ${CMAKE_INSTALL_PREFIX} NO_DEFAULT_PATH) # Python 3 bindings
endif()
#${CMAKE_INSTALL_PREFIX} NO_DEFAULT_PATH
if (LEMMA_VTK8_SUPPORT) # Visualisation
find_package (VTK 8.2.0
COMPONENTS
vtkCommonCore
vtkRenderingCore
vtkFiltersCore
vtkFiltersSources
vtkCommonDataModel
vtkFiltersHyperTree
vtkIOXML
vtkIOImage
vtkIOLegacy
vtkIOGeometry
vtkInteractionStyle
vtkRenderingAnnotation
vtkFiltersHybrid
vtkFiltersModeling
vtkRenderingVolumeOpenGL2
QUIET
)
endif()
if (LEMMA_VTK9_SUPPORT) # Visualisation
find_package (VTK 9.0.1
COMPONENTS
CommonCore
RenderingCore
FiltersCore
FiltersSources
CommonDataModel
FiltersHyperTree
IOXML
IOImage
IOLegacy
IOGeometry
InteractionStyle
RenderingAnnotation
FiltersHybrid
FiltersModeling
RenderingVolumeOpenGL2
QUIET
)
endif()
else()
find_package (Eigen3 3.3 QUIET ) # Matrix/Vector & Math
find_package (yaml-cpp 0.6 QUIET ) # Serialisation of classes
if (LEMMA_VTK9_SUPPORT)
find_package (VTK 9.0.1 COMPONENTS
vtkCommonCore
vtkRenderingCore
vtkFiltersCore
vtkFiltersSources
vtkCommonDataModel
vtkFiltersHyperTree
vtkIOXML
vtkIOImage
vtkIOLegacy
vtkIOGeometry
vtkInteractionStyle
vtkRenderingAnnotation
vtkFiltersHybrid
vtkFiltersModeling
vtkRenderingVolumeOpenGL2
QUIET )
endif()
endif()
INCLUDE_DIRECTORIES(${YAML_CPP_INCLUDE_DIR})
#if (VTK_VERSION VERSION_GREATER "8.2.0")
# message( STATUS "${VTK_VERSION} is compatible: ${VTK_VERSION_COMPATIBLE} exact? ${VTK_VERSION_EXACT}" )
# set (VTK_FOUND False)
#endif()
if (VTK_FOUND)
set(volumeRenderer volumerenderer.cxx)
add_definitions(-DLEMMAUSEVTK)
if (LEMMA_VTK8_SUPPORT)
add_definitions(-DLEMMA_VTK8_SUPPORT)
else (LEMMA_VTK9_SUPPORT)
add_definitions(-DLEMMA_VTK9_SUPPORT)
endif()
endif()
if (LEMMA_BUILD_DOCUMENTATION)
find_package(Doxygen REQUIRED)
endif()
## Optional Dependencies
if (LEMMA_ENABLE_TESTING)
if (EXISTS "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/README")
set (CXXTEST_INCLUDE_DIR "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/" CACHE PATH "" FORCE )
else()
set (CXXTEST_INCLUDE_DIR "CXXTEST_INCLUDE_DIR-NOTFOUND" CACHE PATH "" FORCE )
endif()
if (EXISTS "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/bin/cxxtestgen")
set (CXXTEST_PYTHON_TESTGEN_EXECUTABLE "${CMAKE_CURRENT_BINARY_DIR}/external/CxxTest/src/CxxTest/bin/cxxtestgen" CACHE PATH "" FORCE )
else()
set (CXXTEST_PYTHON_TESTGEN_EXECUTABLE "CXXTEST_PYTHON_TESTGEN_EXECUTABLE-NOTFOUND" CACHE PATH "" FORCE )
endif()
find_package (CxxTest QUIET) # Unit testing
endif()
message ( STATUS "VTK Found? " ${VTK_FOUND} )
## Optional Dependencies
if ( NOT Eigen3_FOUND OR
NOT yaml-cpp_FOUND OR
(LEMMA_PYTHON3_BINDINGS AND NOT pybind11_FOUND) OR
(LEMMA_VTK9_SUPPORT AND NOT VTK_FOUND) OR
(LEMMA_ENABLE_TESTING AND NOT CxxTest_FOUND) )
message ( STATUS "Missing hard dependencies have been found, these will be downloaded any compiled." )
message ( STATUS "This necessitates a two step build." )
message ( STATUS "Build these packages first...THEN RERUN CMAKE!" )
project (SUPERBUILD NONE)
# execute the superbuild (this script will be invoked again without the
# USE_SUPERBUILD option this time)
include (CMake/SuperBuild.cmake)
return() # stop processing this file further
else()
#project (Blah) # <-- YOUR PROJECT NAME HERE
message( STATUS "Everything was found, happy Lemma-ing" )
endif()
# Mac OSX RPATH is weird
# enable @rpath in the install name for any shared library being built
# note: it is planned that a future version of CMake will enable this by default
if(POLICY CMP0015)
cmake_policy(SET CMP0015 NEW)
endif()
set(CMAKE_MACOSX_RPATH 1)
project (Lemma CXX)
# Disallow in-source build
if ("${Lemma_SOURCE_DIR}" STREQUAL "${Lemma_BINARY_DIR}")
message(FATAL_ERROR
"Lemma requires an out of source Build. "
"Please create a separate binary directory and run CMake there.")
endif()
if(CXXTEST_FOUND)
if (LEMMA_ENABLE_TESTING)
include (CTest)
enable_testing()
endif()
endif()
##############################
# required external programs # for downloading packages
##############################
FIND_PROGRAM(HAVEGIT git
PATHS /usr/bin/ /bin ENV PATH NO_DEFAULT_PATH
)
if(NOT HAVEGIT)
message(FATAL_ERROR "Lemma requires that git is installed and in the path of your machine")
endif(NOT HAVEGIT)
if(BUILD_SHARED_LIBS)
set(LABEL_SUFFIX "shared")
else()
set(LABEL_SUFFIX "static")
endif()
#######################
# Lemma Configuration #
#######################
#############################
# Look for Ki Ha Lee (EM1D) #
#############################
FIND_LIBRARY( KIHA_EM1D kihaem1d )
if ( KIHA_EM1D )
add_definitions(-DKIHALEE_EM1D)
endif()
####################
# Look for Boost
####################
option (LEMMA_USE_BOOST "Boost is required by gaussian quadrature classes" OFF)
if (LEMMA_USE_BOOST)
find_package(Boost
1.64.0 # Minimum or EXACT version e.g. 1.36.0
# COMPONENTS math # Boost libraries by their canonical name
)
if(Boost_FOUND)
include_directories(${Boost_INCLUDE_DIRS})
find_path( HAVE_BOOST_SPECIAL_FUNCTIONS "boost/math/special_functions.hpp" )
if(HAVE_BOOST_SPECIAL_FUNCTIONS)
add_definitions(-DHAVE_BOOST_SPECIAL_FUNCTIONS)
endif()
else()
message(FATAL_ERROR "Boost was not found, but was requested in CMake.")
endif()
endif()
if (LEMMA_PYTHON3_BINDINGS)
#find_package(PythonLibs 3.0 REQUIRED)
#find_package(pythoninterp REQUIRED)
find_package(pybind11 REQUIRED)
# find_package(Boost 1.64.0 REQUIRED COMPONENTS system python3 numpy3)
# Is this OK for portability of non-python libraries
#include_directories(${PYTHON_INCLUDE_DIRS})
#include_directories(${Boost_INCLUDE_DIRS})
install ( FILES python/setup.py DESTINATION ${CMAKE_INSTALL_PREFIX}/pyLemma/ )
install ( FILES python/long.md DESTINATION ${CMAKE_INSTALL_PREFIX}/pyLemma/ )
install ( FILES python/publish.sh DESTINATION ${CMAKE_INSTALL_PREFIX}/pyLemma/ )
install ( FILES README.md DESTINATION ${CMAKE_INSTALL_PREFIX}/pyLemma/ )
install ( DIRECTORY python/pyLemma DESTINATION ${CMAKE_INSTALL_PREFIX}/pyLemma/ )
endif()
if (LEMMA_MATLAB_MEX)
find_package(Matlab REQUIRED)
#matlab_add_mex(NAME mex_file_name SRC source_file.cpp)
endif()
####################
# MSVC error fix
####################
option( MSVC_EXTENDED_ALIGNMENT "Turn on MSVC compiler definition _ENABLE_EXTENDED_ALIGNED_STORAGE " OFF )
if (MSVC_EXTENDED_ALIGNMENT)
add_definitions(-D_ENABLE_EXTENDED_ALIGNED_STORAGE)
#if (${CMAKE_BUILD_TYPE} STREQUAL "Release")
# SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /LTCG")
# SET(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} /LTCG")
# SET(CMAKE_STATIC_LINKER_FLAGS "${CMAKE_STATIC_LINKER_FLAGS} /LTCG")
# SET(CMAKE_MODULE_LINKER_FLAGS "${CMAKE_MODULE_LINKER_FLAGS} /LTCG")
#endif()
#add_definitions(-DCMAKE_WINDOWS_EXPORT_ALL_SYMBOLS=TRUE)
#set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS TRUE)
#include(GenerateExportHeader)
endif()
####################
# Magic rpath flag
####################
SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
if (LEMMA_USE_OPENMP)
if(APPLE)
#if(CMAKE_C_COMPILER_ID MATCHES "Clang")
# set(OpenMP_C "${CMAKE_C_COMPILER}")
# set(OpenMP_C_FLAGS "-fopenmp=libomp -Wno-unused-command-line-argument")
# set(OpenMP_C_LIB_NAMES "libomp" "libgomp" "libiomp5")
# set(OpenMP_libomp_LIBRARY ${OpenMP_C_LIB_NAMES})
# set(OpenMP_libgomp_LIBRARY ${OpenMP_C_LIB_NAMES})
# set(OpenMP_libiomp5_LIBRARY ${OpenMP_C_LIB_NAMES})
#endif()
if(CMAKE_CXX_COMPILER_ID MATCHES "Clang")
find_library( libiomp5 NAMES libiomp5.dylib PATHS "/anaconda3/lib/" REQUIRED )
set(OpenMP_CXX "${CMAKE_CXX_COMPILER}")
set(OpenMP_CXX_FLAGS "-fopenmp=libiomp5 -Wno-unused-command-line-argument")
set(OpenMP_CXX_LIB_NAMES "libiomp5") #"libomp" "libgomp" "libiomp5")
#set(OpenMP_libomp_LIBRARY ${OpenMP_CXX_LIB_NAMES})
#set(OpenMP_libgomp_LIBRARY ${OpenMP_CXX_LIB_NAMES})
set(OpenMP_libiomp5_LIBRARY libiomp5 )# ${OpenMP_CXX_LIB_NAMES})
set(OpenMP_LIBRARIES libiomp5)
link_directories("/anaconda3/lib")
# find_package(OpenMP REQUIRED)
# set(OpenMP_CXX_FLAGS "-Xpreprocessor -fopenmp -I/usr/local/opt/libomp/include")
# " -DOpenMP_CXX_LIB_NAMES=\"omp\" -DOpenMP_omp_LIBRARY=/usr/local/opt/libomp/lib/libomp.dylib ")
# set(OpenMP_CXX_LIB_NAMES "omp") # "libgomp" "libiomp5")
# set(OpenMP_libomp_LIBRARY "/usr/local/opt/libomp/lib/libomp.dylib") #${OpenMP_CXX_LIB_NAMES})
# set(OpenMP_libgomp_LIBRARY ${OpenMP_CXX_LIB_NAMES})
# set(OpenMP_libiomp5_LIBRARY ${OpenMP_CXX_LIB_NAMES})
endif()
endif()
if (CMAKE_CROSSCOMPILING)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fopenmp")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fopenmp")
set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fopenmp")
else()
find_package(OpenMP REQUIRED)
if (OPENMP_FOUND)
# include_directories("${OPENMP_INCLUDES}")
link_directories("${OPENMP_LIBRARIES}")
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
endif()
endif()
add_definitions(-DLEMMAUSEOMP) # -DEIGEN_DONT_VECTORIZE)
endif()
configure_file (
"${PROJECT_SOURCE_DIR}/config/LemmaConfig.h.in"
"${PROJECT_BINARY_DIR}/include/LemmaConfig.h"
)
install ( FILES ${PROJECT_BINARY_DIR}/include/LemmaConfig.h DESTINATION ${CMAKE_INSTALL_PREFIX}/include/Lemma/ )
include_directories("${PROJECT_BINARY_DIR}/include")
include_directories ("${CMAKE_INSTALL_PREFIX}/include/")
link_directories ("${CMAKE_INSTALL_PREFIX}/lib/")
##############
# gprof hack #
##############
#set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pg")
########################################################################
# Build Modules
add_subdirectory (Modules)
#######################################################################
# CXXTEST Framework
if(CXXTEST_FOUND)
if (LEMMA_ENABLE_TESTING)
include (CTest)
enable_testing()
endif()
endif()
########################################################################
# add a target to generate API documentation with Doxyfile.in
# ALL make documentation build by default if possible
if (LEMMA_BUILD_DOCUMENTATION)
find_package(Doxygen)
if(DOXYGEN_FOUND)
message( STATUS "LEMMA_BUILD_DOCUMENTATION must be positive" )
# Custom header and footer option, enable in Doxygen
# file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/Documentation/header.html
# DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/Documentation/header.html
# )
# file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/Documentation/footer.html
# DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/Documentation/footer.html
# )
configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Documentation/Doxyfile.in ${CMAKE_CURRENT_BINARY_DIR}/Documentation/Doxyfile @ONLY)
add_custom_target(doc
ALL
${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Documentation/Doxyfile
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
COMMENT "Generating API documentation with Doxygen" VERBATIM
)
endif(DOXYGEN_FOUND)
endif (LEMMA_BUILD_DOCUMENTATION)
# vim: set tabstop=4 shiftwidth=4 expandtab: