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History / Metagenomic standard operating procedure

Revisions

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Jan 30, 2018
    a54707a

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Jan 30, 2018
    51b5820

  • Revert 178488a37fa28a8cf3695ccfb7f1e8e0f517c3a6...bc3e553d27574ed6bfdd5bd3befc88dae97b848e on Metagenomic standard operating procedure

    @gavinmdouglas gavinmdouglas committed Jan 30, 2018
    fa32565

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Oct 5, 2017
    bc3e553

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Oct 5, 2017
    ca80b14

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Oct 5, 2017
    d501181

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Oct 5, 2017
    0b1f535

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Mar 29, 2017
    178488a

  • Added "mkdir pre_humann" as step

    @gavinmdouglas gavinmdouglas committed Mar 29, 2017
    2206cca

  • Updated Metagenomic standard operating procedure (markdown)

    @mlangill mlangill committed Mar 29, 2017
    602e0e3

  • Updated Metagenomic standard operating procedure (markdown)

    @mlangill mlangill committed Mar 29, 2017
    19606b6

  • Updated Metagenomic standard operating procedure (markdown)

    @mlangill mlangill committed Mar 29, 2017
    e47115c

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Dec 13, 2016
    7260787

  • Corrected #6 so that only "paired" FASTQs outputted by trimmomatic are concatenated

    @gavinmdouglas gavinmdouglas committed Dec 13, 2016
    3bab076

  • Updated Metagenomic standard operating procedure (markdown)

    @amcomeau amcomeau committed Dec 9, 2016
    62e9f9d

  • Updated Metagenomic standard operating procedure (markdown)

    @amcomeau amcomeau committed Dec 9, 2016
    6b0417d

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Dec 6, 2016
    2f0d6e8

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Dec 6, 2016
    d606684

  • Added that you need to gunzip your FASTQs if you're not running PEAR

    @gavinmdouglas gavinmdouglas committed Dec 6, 2016
    a83eb9f

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Dec 6, 2016
    0e295ff

  • Explicitly added step for concatenating reads after quality filtering

    @gavinmdouglas gavinmdouglas committed Dec 6, 2016
    9e40654

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Nov 28, 2016
    3c17757

  • Add in description of how trimmomatic is delmited

    @gavinmdouglas gavinmdouglas committed Nov 28, 2016
    19f310c

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Nov 15, 2016
    4ca77e3

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Nov 15, 2016
    2bcdaed

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Nov 15, 2016
    1aabce8

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Nov 15, 2016
    367ea4a

  • Updated Metagenomic standard operating procedure (markdown)

    @amcomeau amcomeau committed Nov 7, 2016
    fa5230a

  • Updated Metagenomic standard operating procedure (markdown)

    @amcomeau amcomeau committed Nov 7, 2016
    c73aa4d

  • Updated Metagenomic standard operating procedure (markdown)

    @gavinmdouglas gavinmdouglas committed Nov 4, 2016
    fe267a3