diff --git a/exonerate_hits.py b/exonerate_hits.py index 46da094..60a45a3 100755 --- a/exonerate_hits.py +++ b/exonerate_hits.py @@ -29,7 +29,7 @@ def initial_exonerate(proteinfilename, assemblyfilename,prefix): exonerate_ryo = '">%ti,%qi,%qab,%qae,%pi,(%tS),%tab,%tae\\n%tcs\\n"' exonerate_command = "exonerate -m protein2genome --showalignment no --showvulgar no -V 0 --ryo %s %s %s >%s" % (exonerate_ryo,proteinfilename,assemblyfilename,outputfilename) - logger.info(exonerate_command) + logger.debug(exonerate_command) #print exonerate_ryo #proc = subprocess.Popen(['exonerate','-m','protein2genome','--showalignment','no','-V','0','--showvulgar','no','--ryo',exonerate_ryo,proteinfilename,assemblyfilename]) proc = subprocess.call(exonerate_command,shell=True)