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GPU sampler #524

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stelmo opened this issue Nov 21, 2021 · 2 comments
Closed

GPU sampler #524

stelmo opened this issue Nov 21, 2021 · 2 comments
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@stelmo
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stelmo commented Nov 21, 2021

Will making a GPU based hit and run sampler speed things up? Investigate and add if so.
@stelmo stelmo added the feature New feature/functionality label Nov 21, 2021
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exaexa commented Nov 21, 2021

Yes, sure, the sampling is in fact quite GPU-izable.

Might need a specialized sampling that benefits from the throughput though. (Would the ACHR thing that we have work better if we run it "much longer than now"?)

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stelmo commented Nov 21, 2021

Good question, I am not sure... It has been a while since I really delved into samplers etc. This seems to be a good review: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0235393

@LCSB-BioCore LCSB-BioCore locked and limited conversation to collaborators Nov 26, 2021
@exaexa exaexa closed this as completed Nov 26, 2021

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