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Issues list

about cell counts in somatic SNV output(chr*.putativeSNVs.csv)
#35 opened Jan 21, 2024 by hanjun98
2
samtools mpileup
#9 opened Aug 29, 2023 by joonan30
8
About Somatic SNV calling from scRNA-seq
#12 opened Sep 6, 2023 by scg-dgist
2
Error about data preprocess
#13 opened Sep 6, 2023 by TuoCai2000
6
About phased.vcf.gz generation during germline calling
#15 opened Sep 11, 2023 by scg-dgist
6
About run data preprocess
#17 opened Sep 19, 2023 by WeiZhaoLuck
7
nothing in the germline.vcf file
#21 opened Oct 5, 2023 by hanliu0119
2
preprocess error
#24 opened Oct 17, 2023 by zheng-sc
2
Error on gemline calling
#26 opened Oct 26, 2023 by carolwxm
1
Issues in the test file chr20.maester_scRNA.bam for somatic mutation calling
#30 opened Dec 12, 2023 by alextidd
7
Error in Germline
#31 opened Jan 9, 2024 by parth2608
6
Requires unsupported openssl version
#32 opened Jan 11, 2024 by ArunaNannapaneni
error in chr20.gl.vcf, broken VCF record, incorrect # of columns
#5 opened Mar 16, 2023 by chouellaine
Missing genotypes？
#34 opened Jan 19, 2024 by wangjunyu-cumt
7
Explanation .gl, .gp, .phased files
#40 opened Feb 13, 2024 by rafaella-buzatu
1
chr20.gp.vcf.gz: No such file or directory
#50 opened Apr 7, 2024 by dipingxian431
5
outputs of cellScan
#53 opened May 6, 2024 by ariannadib
3
Missing chr20.germline.vcf from germline calling step
#55 opened May 7, 2024 by briansha
8
Different somatic calls across Monopogen v.1.0 and v1.6.0 help wanted Extra attention is needed
#58 opened May 9, 2024 by ypershad
5
Error during LDrefinement
#61 opened May 21, 2024 by Thapeachydude
@ZiyiWang7
10
germ line module not detecting full chromosome
#65 opened Jun 23, 2024 by aidanshoham12
3
Running monopogen on very large samples
#68 opened Jul 11, 2024 by aidanshoham12
Incorrect version of beagle when using conda install monopogen
#69 opened Jul 11, 2024 by hima-anbunathan-takara
5
java.lang.OutOfMemoryError when running beagle
#79 opened Oct 8, 2024 by wkdeng
1
Issues related to cell_cluster.csv
#109 opened Mar 12, 2025 by Joyjoyjoyc
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