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Bwa is the main aligner for short genomic reads, it's probably the most important tool in bioinformatics. It's usually used as a standalone but I'd be curious to see how it performs as a library, and that would enable a full Julia pipeline. It's just C with no dependencies so it shouldn't be the hardest to build.
Bwa is the main aligner for short genomic reads, it's probably the most important tool in bioinformatics. It's usually used as a standalone but I'd be curious to see how it performs as a library, and that would enable a full Julia pipeline. It's just C with no dependencies so it shouldn't be the hardest to build.
https://github.com/lh3/bwa
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