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Test GeometricIntegrators fails #150

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finmod opened this issue Jan 7, 2023 · 5 comments
Closed

Test GeometricIntegrators fails #150

finmod opened this issue Jan 7, 2023 · 5 comments

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@finmod
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finmod commented Jan 7, 2023

[0234f1f7] HDF5_jll v1.12.2+2
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+2
[1d63c593] LLVMOpenMP_jll v15.0.4+0
[856f044c] MKL_jll v2022.2.0+0
[458c3c95] OpenSSL_jll v1.1.19+0
[efe28fd5] OpenSpecFun_jll v0.5.5+0
[f50d1b31] Rmath_jll v0.3.0+0
[0dad84c5] ArgTools v1.1.1 @stdlib/ArgTools
[56f22d72] Artifacts @stdlib/Artifacts
[2a0f44e3] Base64 @stdlib/Base64
[ade2ca70] Dates @stdlib/Dates
[8bb1440f] DelimitedFiles @stdlib/DelimitedFiles
[8ba89e20] Distributed @stdlib/Distributed
[f43a241f] Downloads v1.6.0 @stdlib/Downloads
[7b1f6079] FileWatching @stdlib/FileWatching
[9fa8497b] Future @stdlib/Future
[b77e0a4c] InteractiveUtils @stdlib/InteractiveUtils
[4af54fe1] LazyArtifacts @stdlib/LazyArtifacts
[b27032c2] LibCURL v0.6.3 @stdlib/LibCURL
[76f85450] LibGit2 @stdlib/LibGit2
[8f399da3] Libdl @stdlib/Libdl
[37e2e46d] LinearAlgebra @stdlib/LinearAlgebra
[56ddb016] Logging @stdlib/Logging
[d6f4376e] Markdown @stdlib/Markdown
[a63ad114] Mmap @stdlib/Mmap
[ca575930] NetworkOptions v1.2.0 @stdlib/NetworkOptions
[44cfe95a] Pkg v1.8.0 @stdlib/Pkg
[de0858da] Printf @stdlib/Printf
[3fa0cd96] REPL @stdlib/REPL
[9a3f8284] Random @stdlib/Random
[ea8e919c] SHA v0.7.0 @stdlib/SHA
[9e88b42a] Serialization @stdlib/Serialization
[1a1011a3] SharedArrays @stdlib/SharedArrays
[6462fe0b] Sockets @stdlib/Sockets
[2f01184e] SparseArrays @stdlib/SparseArrays
[10745b16] Statistics @stdlib/Statistics
[4607b0f0] SuiteSparse @stdlib/SuiteSparse
[fa267f1f] TOML v1.0.0 @stdlib/TOML
[a4e569a6] Tar v1.10.1 @stdlib/Tar
[8dfed614] Test @stdlib/Test
[cf7118a7] UUIDs @stdlib/UUIDs
[4ec0a83e] Unicode @stdlib/Unicode
[e66e0078] CompilerSupportLibraries_jll v1.0.1+0 @stdlib/CompilerSupportLibraries_jll
[781609d7] GMP_jll v6.2.1+2 @stdlib/GMP_jll
[deac9b47] LibCURL_jll v7.84.0+0 @stdlib/LibCURL_jll
[29816b5a] LibSSH2_jll v1.10.2+0 @stdlib/LibSSH2_jll
[3a97d323] MPFR_jll v4.1.1+1 @stdlib/MPFR_jll
[c8ffd9c3] MbedTLS_jll v2.28.0+0 @stdlib/MbedTLS_jll
[14a3606d] MozillaCACerts_jll v2022.2.1 @stdlib/MozillaCACerts_jll
[4536629a] OpenBLAS_jll v0.3.20+0 @stdlib/OpenBLAS_jll
[05823500] OpenLibm_jll v0.8.1+0 @stdlib/OpenLibm_jll
[83775a58] Zlib_jll v1.2.12+3 @stdlib/Zlib_jll
[8e850b90] libblastrampoline_jll v5.1.1+0 @stdlib/libblastrampoline_jll
[8e850ede] nghttp2_jll v1.48.0+0 @stdlib/nghttp2_jll
[3f19e933] p7zip_jll v17.4.0+0 @stdlib/p7zip_jll
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
Precompiling project...
✗ GeometricIntegrators
9 dependencies successfully precompiled in 70 seconds. 194 already precompiled.
1 dependency errored. To see a full report either run import Pkg; Pkg.precompile() or load the package
Testing Running tests...
ERROR: LoadError: TypeError: in Type{...} expression, expected UnionAll, got Type{SimpleSolvers.NonlinearSolver}
Stacktrace:
[1] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\integrators\rk\integrators_firk.jl:65
[2] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[3] include(x::String)
@ GeometricIntegrators.Integrators C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\Integrators.jl:1
[4] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\Integrators.jl:99
[5] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[6] include(x::String)
@ GeometricIntegrators C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\GeometricIntegrators.jl:1
[7] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\GeometricIntegrators.jl:15
[8] include
@ .\Base.jl:419 [inlined]
[9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1554
[10] top-level scope
@ stdin:1
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\integrators\rk\integrators_firk.jl:65
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\Integrators.jl:1
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\GeometricIntegrators.jl:1
in expression starting at stdin:1
Solution Step : Error During Test at C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:25
Got exception outside of a @test
LoadError: Failed to precompile GeometricIntegrators [dcce2d33-59f6-5b8d-9047-0defad88ae06] to C:\Users\Denis.julia\compiled\v1.8\GeometricIntegrators\jl_3AD2.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1707
[3] compilecache
@ .\loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[10] include(x::String)
@ Main.var"##312".var"##313" C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[11] macro expansion
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\solutions\solutions_tests.jl:5 [inlined]
[12] macro expansion
@ C:\Users\Denis.julia\juliaup\julia-1.8.4+0.x64.w64.mingw32\share\julia\stdlib\v1.8\Test\src\Test.jl:1363 [inlined]
[13] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\solutions\solutions_tests.jl:5
[14] eval(m::Module, e::Any)
@ Core .\boot.jl:368
[15] top-level scope
@ C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[16] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[17] include(x::String)
@ Main.var"##312" C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[18] macro expansion
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\runtests.jl:4 [inlined]
[19] macro expansion
@ C:\Users\Denis.julia\juliaup\julia-1.8.4+0.x64.w64.mingw32\share\julia\stdlib\v1.8\Test\src\Test.jl:1363 [inlined]
[20] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\runtests.jl:4
[21] eval(m::Module, e::Any)
@ Core .\boot.jl:368
[22] top-level scope
@ C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[23] include(fname::String)
@ Base.MainInclude .\client.jl:476
[24] top-level scope
@ none:6
[25] eval
@ .\boot.jl:368 [inlined]
[26] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:276
[27] _start()
@ Base .\client.jl:522
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\solutions\solution_step_tests.jl:3
ERROR: LoadError: TypeError: in Type{...} expression, expected UnionAll, got Type{SimpleSolvers.NonlinearSolver}
Stacktrace:
[1] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\integrators\rk\integrators_firk.jl:65
[2] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[3] include(x::String)
@ GeometricIntegrators.Integrators C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\Integrators.jl:1
[4] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\Integrators.jl:99
[5] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[6] include(x::String)
@ GeometricIntegrators C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\GeometricIntegrators.jl:1
[7] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\GeometricIntegrators.jl:15
[8] include
@ .\Base.jl:419 [inlined]
[9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
@ Base .\loading.jl:1554
[10] top-level scope
@ stdin:1
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\integrators\rk\integrators_firk.jl:65
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\Integrators.jl:1
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\src\GeometricIntegrators.jl:1
in expression starting at stdin:1
Deterministic Solutions : Error During Test at C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:25
Got exception outside of a @test
LoadError: Failed to precompile GeometricIntegrators [dcce2d33-59f6-5b8d-9047-0defad88ae06] to C:\Users\Denis.julia\compiled\v1.8\GeometricIntegrators\jl_7BD4.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1707
[3] compilecache
@ .\loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[10] include(x::String)
@ Main.var"##312".var"##314" C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[11] macro expansion
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\solutions\solutions_tests.jl:8 [inlined]
[12] macro expansion
@ C:\Users\Denis.julia\juliaup\julia-1.8.4+0.x64.w64.mingw32\share\julia\stdlib\v1.8\Test\src\Test.jl:1363 [inlined]
[13] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\solutions\solutions_tests.jl:8
[14] eval(m::Module, e::Any)
@ Core .\boot.jl:368
[15] top-level scope
@ C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[16] include(mod::Module, _path::String)
@ Base .\Base.jl:419
[17] include(x::String)
@ Main.var"##312" C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[18] macro expansion
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\runtests.jl:4 [inlined]
[19] macro expansion
@ C:\Users\Denis.julia\juliaup\julia-1.8.4+0.x64.w64.mingw32\share\julia\stdlib\v1.8\Test\src\Test.jl:1363 [inlined]
[20] top-level scope
@ C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\runtests.jl:4
[21] eval(m::Module, e::Any)
@ Core .\boot.jl:368
[22] top-level scope
@ C:\Users\Denis.julia\packages\SafeTestsets\A83XK\src\SafeTestsets.jl:23
[23] include(fname::String)
@ Base.MainInclude .\client.jl:476
[24] top-level scope
@ none:6
[25] eval
@ .\boot.jl:368 [inlined]
[26] exec_options(opts::Base.JLOptions)
@ Base .\client.jl:276
[27] _start()
@ Base .\client.jl:522
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\solutions\deterministic_solutions_tests.jl:2
Test Summary: | Error Total Time
Solution Tests | 2 2 30.3s
Solution Step | 1 1 15.3s
Deterministic Solutions | 1 1 15.0s
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken.
in expression starting at C:\Users\Denis.julia\packages\GeometricIntegrators\mEZqa\test\runtests.jl:4
ERROR: Package GeometricIntegrators errored during testing

(@v1.8) pkg>
@michakraus
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This looks like an issue due to recent changes in SimpleSolvers which were supposedly non-breaking, but maybe were breaking indeed.

You can try to fix the SimpleSolvers version to 0.2.1:

]add SimpleSolvers@0.2.1

I will investigate this further within the next days.

@finmod
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finmod commented Jan 9, 2023

With SimpleSolvers@0.2.1, same failure to pre-compile GeometricIntegrators.

@michakraus
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Thanks for checking. I will look into this asap.

@michakraus
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Indeed it works only with SimpleSolvers@0.2.0. I am not yet quite sure what happened here. For the time being I fixed the SimpleSolvers version in Project.toml so that the master branch should work again. I will also trigger a release...

@finmod
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finmod commented Jan 10, 2023

Tests of GeometricIntegrators#master @0.11.4 pass. Needs tidying up with SciML/GeometricIntegratorsDiffEq.jl#26 for use with DifferentialEquations and MTK

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@finmod @michakraus