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1.5.0-DEV-1f787492c3.log
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Julia Version 1.5.0-DEV.507
Commit 1f787492c3 (2020-03-25 15:03 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed ProgressMeter ─────────────── v1.2.0
Installed PyCallUtils ───────────────── v0.2.1
Installed Combinatorics ─────────────── v0.7.0
Installed BSON ──────────────────────── v0.2.5
Installed MLInterpret ───────────────── v0.1.2
Installed OrderedCollections ────────── v1.1.0
Installed PyCall ────────────────────── v1.91.4
Installed DataValues ────────────────── v0.4.13
Installed RecipesBase ───────────────── v0.8.0
Installed Missings ──────────────────── v0.4.3
Installed SortingAlgorithms ─────────── v0.3.1
Installed Conda ─────────────────────── v1.4.1
Installed TableTraits ───────────────── v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed Parsers ───────────────────── v0.3.12
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed URIParser ─────────────────── v0.4.0
Installed PandasLite ────────────────── v0.1.2
Installed StatsBase ─────────────────── v0.32.2
Installed Compat ────────────────────── v2.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed VersionParsing ────────────── v1.2.0
Installed Requires ──────────────────── v0.5.2
Installed BinDeps ───────────────────── v0.8.10
Installed MacroTools ────────────────── v0.5.5
Installed DataStructures ────────────── v0.17.10
Installed JSON ──────────────────────── v0.21.0
Installed Polynomials ───────────────── v0.6.1
Updating `~/.julia/environments/v1.5/Project.toml`
8be67bde + MLInterpret v0.1.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
fbb218c0 + BSON v0.2.5
9e28174c + BinDeps v0.8.10
861a8166 + Combinatorics v0.7.0
34da2185 + Compat v2.2.0
8f4d0f93 + Conda v1.4.1
9a962f9c + DataAPI v1.1.0
864edb3b + DataStructures v0.17.10
e2d170a0 + DataValueInterfaces v1.0.0
e7dc6d0d + DataValues v0.4.13
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
8be67bde + MLInterpret v0.1.2
1914dd2f + MacroTools v0.5.5
e1d29d7a + Missings v0.4.3
bac558e1 + OrderedCollections v1.1.0
f5117550 + PandasLite v0.1.2
69de0a69 + Parsers v0.3.12
f27b6e38 + Polynomials v0.6.1
92933f4c + ProgressMeter v1.2.0
438e738f + PyCall v1.91.4
02651160 + PyCallUtils v0.2.1
3cdcf5f2 + RecipesBase v0.8.0
ae029012 + Requires v0.5.2
a2af1166 + SortingAlgorithms v0.3.1
2913bbd2 + StatsBase v0.32.2
3783bdb8 + TableTraits v1.0.0
382cd787 + TableTraitsUtils v1.0.1
30578b45 + URIParser v0.4.0
81def892 + VersionParsing v1.2.0
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building Conda ──────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall ─────→ `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Building MLInterpret → `~/.julia/packages/MLInterpret/dR26R/deps/build.log`
┌ Error: Error building `MLInterpret`:
│ Reading package lists...
│ Building dependency tree...
│ Reading state information...
│ g++ is already the newest version (4:7.4.0-1ubuntu2.3).
│ g++ set to manually installed.
│ 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
│ Reading package lists...
│ Building dependency tree...
│ Reading state information...
│ E: Unable to locate package graphviz
│ ERROR: LoadError: failed process: Process(`sudo apt-get install -y graphviz`, ProcessExited(100)) [100]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] run(::Cmd; wait::Bool) at ./process.jl:440
│ [3] run(::Cmd) at ./process.jl:438
│ [4] top-level scope at /home/pkgeval/.julia/packages/MLInterpret/dR26R/deps/build.jl:32
│ [5] include(::String) at ./client.jl:441
│ [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/MLInterpret/dR26R/deps/build.jl:27
│ Installing dependency g++ via `sudo apt-get install g++`:
│ Installing dependency graphviz via `sudo apt-get install graphviz`:
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:912
Testing MLInterpret
Status `/tmp/jl_W9po8Z/Project.toml`
9e28174c BinDeps v0.8.10
861a8166 Combinatorics v0.7.0
8be67bde MLInterpret v0.1.2
f5117550 PandasLite v0.1.2
92933f4c ProgressMeter v1.2.0
438e738f PyCall v1.91.4
02651160 PyCallUtils v0.2.1
2913bbd2 StatsBase v0.32.2
8ba89e20 Distributed
44cfe95a Pkg
9a3f8284 Random
10745b16 Statistics
Status `/tmp/jl_W9po8Z/Manifest.toml`
fbb218c0 BSON v0.2.5
9e28174c BinDeps v0.8.10
861a8166 Combinatorics v0.7.0
34da2185 Compat v2.2.0
8f4d0f93 Conda v1.4.1
9a962f9c DataAPI v1.1.0
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
e7dc6d0d DataValues v0.4.13
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
8be67bde MLInterpret v0.1.2
1914dd2f MacroTools v0.5.5
e1d29d7a Missings v0.4.3
bac558e1 OrderedCollections v1.1.0
f5117550 PandasLite v0.1.2
69de0a69 Parsers v0.3.12
f27b6e38 Polynomials v0.6.1
92933f4c ProgressMeter v1.2.0
438e738f PyCall v1.91.4
02651160 PyCallUtils v0.2.1
3cdcf5f2 RecipesBase v0.8.0
ae029012 Requires v0.5.2
a2af1166 SortingAlgorithms v0.3.1
2913bbd2 StatsBase v0.32.2
3783bdb8 TableTraits v1.0.0
382cd787 TableTraitsUtils v1.0.1
30578b45 URIParser v0.4.0
81def892 VersionParsing v1.2.0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:11 is deprecated, use `get!(()->default, dict, key)` instead.
│ caller = include(::Function, ::Module, ::String) at Base.jl:380
└ @ Base ./Base.jl:380
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:327 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:336 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/pyiterator.jl:138 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/pyiterator.jl:138 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:56.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:336 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:327 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:38 overwritten in module PandasLite at /home/pkgeval/.julia/packages/PandasLite/qvpze/src/PandasLite.jl:115.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package pandas could not be found by pyimport. Usually this means
that you did not install pandas in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the pandas module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the pandas module, you can use `pyimport_conda("pandas", PKG)`,
where PKG is the Anaconda package the contains the module pandas,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'pandas'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:536
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:694
[3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:693 [inlined]
[4] __init__() at /home/pkgeval/.julia/packages/PandasLite/qvpze/src/PandasLite.jl:18
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[6] _require_from_serialized(::String) at ./loading.jl:748
[7] _require(::Base.PkgId) at ./loading.jl:1039
[8] require(::Base.PkgId) at ./loading.jl:927
[9] require(::Module, ::Symbol) at ./loading.jl:922
[10] include(::Function, ::Module, ::String) at ./Base.jl:380
[11] include(::Module, ::String) at ./Base.jl:368
[12] top-level scope at none:2
[13] eval at ./boot.jl:331 [inlined]
[14] eval(::Expr) at ./client.jl:451
[15] top-level scope at ./none:3
during initialization of module PandasLite
in expression starting at /home/pkgeval/.julia/packages/MLInterpret/dR26R/src/MLInterpret.jl:4
ERROR: LoadError: Failed to precompile MLInterpret [8be67bde-e6c3-11e9-38b8-61e71f321663] to /home/pkgeval/.julia/compiled/v1.5/MLInterpret/bHwGA_G5MeW.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:441
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/MLInterpret/dR26R/test/runtests.jl:1
ERROR: Package MLInterpret errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:16